Wall clock time and date at job start Sun Mar 29 2020 22:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99951 * 2 1 4 4 H 1.48498 * 109.47171 * 270.00567 * 3 2 1 5 5 H 1.48500 * 109.46632 * 30.00818 * 3 2 1 6 6 H 1.48494 * 109.47053 * 150.00254 * 3 2 1 7 7 C 1.37877 * 120.00094 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00248 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.46912 * 179.97438 * 10 9 7 12 12 O 1.21278 * 119.99985 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00161 * 179.97438 * 11 10 9 14 14 C 1.45314 * 118.81498 * 359.73619 * 13 11 10 15 15 C 1.51879 * 111.89330 * 236.45546 * 14 13 11 16 16 C 1.52096 * 112.14537 * 317.71191 * 15 14 13 17 17 H 1.09000 * 115.19409 * 230.95948 * 16 15 14 18 18 C 1.53818 * 115.32754 * 90.26037 * 16 15 14 19 19 C 1.51962 * 121.30087 * 21.74340 * 16 15 14 20 20 H 1.09008 * 115.76953 * 208.72477 * 19 16 15 21 21 C 1.45515 * 118.81951 * 180.02562 * 13 11 10 22 22 H 0.97000 * 120.00333 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47152 * 60.00329 * 9 7 2 24 24 H 1.09001 * 109.46980 * 300.00429 * 9 7 2 25 25 H 1.09001 * 109.47194 * 299.99742 * 10 9 7 26 26 H 1.08992 * 109.47399 * 59.99914 * 10 9 7 27 27 H 1.08999 * 108.97673 * 356.56934 * 14 13 11 28 28 H 1.09000 * 108.97176 * 115.27702 * 14 13 11 29 29 H 1.08997 * 108.04318 * 197.70278 * 15 14 13 30 30 H 1.09001 * 109.95565 * 79.01782 * 15 14 13 31 31 H 1.09000 * 117.54139 * 139.74344 * 18 16 15 32 32 H 1.09004 * 117.54096 * 354.47102 * 18 16 15 33 33 H 1.09006 * 109.11663 * 260.55672 * 21 13 11 34 34 H 1.08994 * 109.12301 * 19.68848 * 21 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2791 -4.9672 0.0000 13 7 2.1658 -6.1344 -0.0003 14 6 3.6186 -6.1044 -0.0072 15 6 4.1953 -6.8740 -1.1827 16 6 3.4680 -8.1886 -1.4196 17 1 4.1097 -9.0660 -1.4997 18 6 2.2715 -8.1142 -2.3835 19 6 2.0549 -8.4125 -0.9076 20 1 1.7926 -9.4449 -0.6763 21 6 1.4124 -7.3793 -0.0002 22 1 -0.4850 0.8400 0.0004 23 1 0.6241 -2.5568 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.8720 -3.6043 -0.8905 26 1 2.8720 -3.6043 0.8894 27 1 3.9514 -5.0685 -0.0729 28 1 3.9864 -6.5349 0.9242 29 1 5.2429 -7.0842 -0.9673 30 1 4.1361 -6.2698 -2.0880 31 1 2.1402 -8.9354 -3.0882 32 1 1.9777 -7.1295 -2.7471 33 1 1.3725 -7.7724 1.0157 34 1 0.3979 -7.1828 -0.3468 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000598331608.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:35 Heat of formation + Delta-G solvation = -23.233274 kcal Electronic energy + Delta-G solvation = -15303.512521 eV Core-core repulsion = 12815.558801 eV Total energy + Delta-G solvation = -2487.953720 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.27558 -37.97964 -34.43555 -33.50122 -31.69274 -30.80287 -27.27529 -25.17769 -24.19596 -21.87202 -21.44698 -19.50235 -17.88295 -17.13943 -16.13041 -15.71306 -15.60243 -14.85540 -14.40224 -14.19250 -13.40252 -13.32629 -12.92936 -12.58556 -12.19935 -11.98076 -11.78489 -11.53258 -11.15491 -10.92539 -10.83828 -10.55855 -10.04162 -9.95955 -9.91840 -9.57360 -9.15491 -8.96731 -8.37569 -8.28989 -5.94745 -3.99219 3.20166 3.32303 3.34235 3.40413 3.43042 3.64325 4.46396 4.49180 4.70624 4.77157 4.97412 5.11812 5.16957 5.33802 5.40157 5.47445 5.70624 5.72422 5.79617 5.83838 5.85751 6.04083 6.07984 6.17425 6.22018 6.22943 6.85416 6.95507 7.75031 7.76623 7.87802 8.08659 8.39826 8.76083 9.09274 9.64264 11.16267 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.050217 B = 0.005840 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 557.444914 B = 4793.206449 C = 5092.429791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.527 4.527 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.129 4.129 11 C 0.507 3.493 12 O -0.533 6.533 13 N -0.618 5.618 14 C 0.108 3.892 15 C -0.106 4.106 16 C -0.146 4.146 17 H 0.102 0.898 18 C -0.179 4.179 19 C -0.152 4.152 20 H 0.107 0.893 21 C 0.142 3.858 22 H 0.261 0.739 23 H 0.023 0.977 24 H 0.023 0.977 25 H 0.079 0.921 26 H 0.080 0.920 27 H 0.095 0.905 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.071 0.929 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.061 0.939 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.933 -16.268 -1.802 18.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.169 4.169 11 C 0.298 3.702 12 O -0.408 6.408 13 N -0.353 5.353 14 C -0.015 4.015 15 C -0.144 4.144 16 C -0.164 4.164 17 H 0.120 0.880 18 C -0.216 4.216 19 C -0.170 4.170 20 H 0.125 0.875 21 C 0.019 3.981 22 H 0.070 0.930 23 H 0.041 0.959 24 H 0.042 0.958 25 H 0.097 0.903 26 H 0.098 0.902 27 H 0.113 0.887 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.080 0.920 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 8.116 -16.149 -1.791 18.162 hybrid contribution 0.557 0.719 -0.084 0.913 sum 8.673 -15.430 -1.875 17.800 Atomic orbital electron populations 1.69999 1.06068 1.26574 1.50210 1.25025 0.94813 0.99215 0.95310 0.86592 0.79776 0.83533 0.78056 1.20680 1.21222 1.19882 1.21217 0.92901 0.91008 1.51374 0.92622 1.18913 0.93189 0.89390 0.98612 1.21889 1.00719 0.92023 1.02235 1.21676 0.88507 0.85713 0.74347 1.90652 1.14444 1.87264 1.48460 1.47463 1.06390 1.05983 1.75507 1.21037 0.80286 1.02338 0.97863 1.21060 0.99344 0.94673 0.99335 1.21983 0.90361 0.99163 1.04926 0.88019 1.23131 1.02986 1.03248 0.92239 1.22017 0.98584 1.00147 0.96299 0.87507 1.20299 0.96516 0.83210 0.98091 0.92952 0.95860 0.95817 0.90277 0.90218 0.88704 0.91970 0.90573 0.90995 0.88968 0.88597 0.92036 0.88923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.64 13.29 55.43 0.74 -26.90 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.03 9.11 -34.44 -0.31 -15.35 16 8 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.04 1.00 4.26 -27.88 -0.12 0.88 16 10 C -0.13 -2.67 3.91 -27.88 -0.11 -2.78 16 11 C 0.51 10.21 7.63 -10.98 -0.08 10.13 16 12 O -0.53 -12.94 15.28 5.56 0.08 -12.85 16 13 N -0.62 -9.56 2.97 -176.83 -0.53 -10.09 16 14 C 0.11 1.30 6.21 -5.25 -0.03 1.27 16 15 C -0.11 -1.07 5.97 -27.76 -0.17 -1.24 16 16 C -0.15 -1.46 6.19 -91.18 -0.56 -2.02 16 17 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 18 C -0.18 -1.97 9.90 -26.76 -0.26 -2.23 16 19 C -0.15 -1.66 5.98 -92.22 -0.55 -2.21 16 20 H 0.11 0.97 8.14 -51.92 -0.42 0.55 16 21 C 0.14 1.96 6.33 -5.20 -0.03 1.93 16 22 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.08 1.50 7.64 -51.93 -0.40 1.10 16 26 H 0.08 1.51 7.81 -51.93 -0.41 1.10 16 27 H 0.09 1.14 5.50 -51.93 -0.29 0.86 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.77 8.03 -51.93 -0.42 0.36 16 31 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.47 6.99 -51.93 -0.36 1.11 16 LS Contribution 278.57 15.07 4.20 4.20 Total: -1.00 -33.34 278.57 -8.07 -41.41 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.21 Total: -2.44 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -2.34 Total: -10.03 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.21 Total: -36.99 kcal Atomic # 8 Polarization: -12.94 SS G_CDS: 0.08 Total: -12.85 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -33.34 -8.07 -41.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000598331608.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.175 kcal (2) G-P(sol) polarization free energy of solvation -33.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds