Wall clock time and date at job start Sun Mar 29 2020 21:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46913 * 2 1 4 4 C 1.36877 * 120.00158 * 82.78245 * 3 2 1 5 5 H 1.08000 * 119.99819 * 171.03375 * 4 3 2 6 6 C 1.39009 * 119.99951 * 351.03381 * 4 3 2 7 7 N 1.31392 * 120.00189 * 2.80333 * 6 4 3 8 8 Si 1.86800 * 120.00057 * 182.80211 * 6 4 3 9 9 H 1.48505 * 109.46977 * 89.99970 * 8 6 4 10 10 H 1.48496 * 109.47081 * 209.99929 * 8 6 4 11 11 H 1.48496 * 109.46998 * 329.99879 * 8 6 4 12 12 C 1.34778 * 119.99837 * 262.77789 * 3 2 1 13 13 O 1.21720 * 120.00307 * 184.57784 * 12 3 2 14 14 C 1.46647 * 120.00036 * 4.57637 * 12 3 2 15 15 N 1.38156 * 126.85026 * 102.36967 * 14 12 3 16 16 H 0.97003 * 126.47518 * 0.02562 * 15 14 12 17 17 C 1.34545 * 107.05135 * 180.28252 * 15 14 12 18 18 N 1.30871 * 109.17252 * 359.56488 * 17 15 14 19 19 C 1.33308 * 109.69882 * 0.44695 * 18 17 15 20 20 C 1.50694 * 126.11072 * 179.74898 * 19 18 17 21 21 H 1.09005 * 109.47155 * 60.00029 * 1 2 3 22 22 H 1.08996 * 109.47431 * 180.02562 * 1 2 3 23 23 H 1.08995 * 109.47367 * 300.00223 * 1 2 3 24 24 H 1.09003 * 109.47039 * 239.99673 * 2 1 3 25 25 H 1.08999 * 109.46807 * 119.99731 * 2 1 3 26 26 H 0.96996 * 120.00562 * 180.02562 * 7 6 4 27 27 H 1.07992 * 125.41569 * 179.71524 * 17 15 14 28 28 H 1.09001 * 109.46924 * 269.97367 * 20 19 18 29 29 H 1.09001 * 109.47244 * 29.97051 * 20 19 18 30 30 H 1.08993 * 109.47540 * 149.97614 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1060 2.0762 1.1760 5 1 2.5983 3.0371 1.1999 6 6 1.5613 1.5451 2.3394 7 7 1.0112 0.3520 2.3222 8 14 1.6116 2.5275 3.9274 9 1 0.3882 3.3627 4.0317 10 1 1.6759 1.5973 5.0831 11 1 2.8107 3.4034 3.9298 12 6 2.3812 1.9677 -1.1580 13 8 2.8648 3.0846 -1.1492 14 6 2.1935 1.2600 -2.4286 15 7 1.1915 1.4732 -3.3556 16 1 0.4743 2.1231 -3.2903 17 6 1.3952 0.6054 -4.3633 18 7 2.4607 -0.1096 -4.1061 19 6 2.9751 0.2569 -2.9322 20 6 4.1994 -0.3288 -2.2773 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8899 24 1 1.8933 -0.5139 -0.8900 25 1 1.8932 -0.5138 0.8900 26 1 0.6308 -0.0185 3.1339 27 1 0.7789 0.5149 -5.2455 28 1 3.9071 -1.1665 -1.6440 29 1 4.8904 -0.6774 -3.0448 30 1 4.6862 0.4336 -1.6693 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602081077.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:36 Heat of formation + Delta-G solvation = 18.660760 kcal Electronic energy + Delta-G solvation = -15753.087447 eV Core-core repulsion = 13163.410045 eV Total energy + Delta-G solvation = -2589.677402 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.02256 -40.14725 -37.16489 -34.17469 -33.76932 -31.94809 -31.29175 -28.44416 -26.77053 -24.14826 -23.48307 -21.99687 -20.51636 -19.20064 -18.68894 -17.67623 -16.45549 -16.24565 -15.84701 -15.63029 -14.97013 -14.71826 -14.54161 -13.88010 -13.76787 -13.54105 -13.25389 -13.09722 -12.81683 -12.67618 -12.19418 -12.04071 -11.83744 -11.31954 -10.87505 -10.84383 -10.56576 -9.79207 -9.24902 -8.22685 -5.95979 0.88273 1.31457 1.43537 1.54613 1.66707 2.07441 2.22817 2.38656 3.08591 3.12486 3.65664 3.98440 4.22397 4.36792 4.49167 4.76451 4.84510 4.90725 4.96346 5.01079 5.06616 5.12076 5.35286 5.57569 5.66049 5.86479 6.01798 6.46342 6.51649 7.02876 7.08655 7.37580 7.91747 8.60339 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041508 B = 0.009266 C = 0.008880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.402208 B = 3021.100829 C = 3152.502636 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.123 3.877 3 N -0.423 5.423 4 C -0.340 4.340 5 H 0.078 0.922 6 C 0.002 3.998 7 N -0.870 5.870 8 Si 0.995 3.005 9 H -0.273 1.273 10 H -0.266 1.266 11 H -0.277 1.277 12 C 0.491 3.509 13 O -0.639 6.639 14 C -0.055 4.055 15 N -0.542 5.542 16 H 0.431 0.569 17 C 0.210 3.790 18 N -0.520 5.520 19 C 0.023 3.977 20 C -0.067 4.067 21 H 0.015 0.985 22 H 0.057 0.943 23 H 0.067 0.933 24 H 0.048 0.952 25 H 0.103 0.897 26 H 0.275 0.725 27 H 0.263 0.737 28 H 0.077 0.923 29 H 0.089 0.911 30 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.336 -3.755 -6.142 7.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.001 3.999 3 N -0.138 5.138 4 C -0.468 4.468 5 H 0.096 0.904 6 C -0.200 4.200 7 N -0.510 5.510 8 Si 0.819 3.181 9 H -0.199 1.199 10 H -0.191 1.191 11 H -0.202 1.202 12 C 0.279 3.721 13 O -0.528 6.528 14 C -0.174 4.174 15 N -0.147 5.147 16 H 0.271 0.729 17 C -0.073 4.073 18 N -0.241 5.241 19 C -0.108 4.108 20 C -0.124 4.124 21 H 0.034 0.966 22 H 0.076 0.924 23 H 0.086 0.914 24 H 0.066 0.934 25 H 0.121 0.879 26 H 0.086 0.914 27 H 0.279 0.721 28 H 0.096 0.904 29 H 0.107 0.893 30 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -2.871 -4.017 -6.437 8.113 hybrid contribution -0.671 1.502 1.254 2.068 sum -3.543 -2.516 -5.183 6.764 Atomic orbital electron populations 1.21982 0.95738 1.00594 0.99836 1.21790 0.95420 0.81585 1.01155 1.43920 1.52224 1.12760 1.04892 1.19767 1.37110 1.03674 0.86234 0.90403 1.26003 0.94891 0.97356 1.01776 1.70229 1.36151 1.15258 1.29324 0.84902 0.78572 0.77882 0.76786 1.19866 1.19093 1.20158 1.17044 0.86249 0.85795 0.83048 1.90605 1.52137 1.22522 1.87546 1.20624 0.97080 1.04730 0.94940 1.43201 1.23431 1.31399 1.16628 0.72879 1.25925 0.97247 0.89001 0.95108 1.69929 1.10781 1.27950 1.15431 1.21061 0.99662 0.96416 0.93673 1.20077 0.92609 1.00051 0.99703 0.96640 0.92441 0.91391 0.93407 0.87928 0.91437 0.72118 0.90429 0.89264 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.21 9.46 71.98 0.68 -4.53 16 2 C 0.12 5.61 5.31 86.38 0.46 6.06 16 3 N -0.42 -21.95 2.63 -640.09 -1.69 -23.63 16 4 C -0.34 -18.85 9.51 84.09 0.80 -18.05 16 5 H 0.08 4.66 7.18 -2.91 -0.02 4.64 16 6 C 0.00 0.09 5.23 84.94 0.44 0.53 16 7 N -0.87 -42.00 7.20 21.67 0.16 -41.84 16 8 Si 1.00 40.66 29.55 68.60 2.03 42.69 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 10 H -0.27 -10.19 7.11 99.48 0.71 -9.48 16 11 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 12 C 0.49 25.41 7.11 86.44 0.61 26.03 16 13 O -0.64 -38.17 16.70 -4.41 -0.07 -38.25 16 14 C -0.06 -2.32 5.56 40.00 0.22 -2.10 16 15 N -0.54 -17.25 6.19 -188.02 -1.16 -18.41 16 16 H 0.43 11.45 8.96 -92.71 -0.83 10.62 16 17 C 0.21 5.61 13.01 180.31 2.35 7.96 16 18 N -0.52 -17.84 11.20 -187.48 -2.10 -19.94 16 19 C 0.02 0.91 6.09 41.99 0.26 1.17 16 20 C -0.07 -2.35 9.92 71.23 0.71 -1.64 16 21 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 22 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 23 H 0.07 3.19 5.86 -2.39 -0.01 3.18 16 24 H 0.05 2.05 5.12 -2.39 -0.01 2.04 16 25 H 0.10 5.02 5.88 -2.39 -0.01 5.01 16 26 H 0.27 12.36 8.31 -92.71 -0.77 11.59 16 27 H 0.26 3.60 8.06 -2.91 -0.02 3.57 16 28 H 0.08 2.57 7.74 -2.39 -0.02 2.55 16 29 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.05 1.95 7.94 -2.39 -0.02 1.93 16 Total: -1.00 -68.13 255.48 4.03 -64.11 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: 0.34 Total: 19.84 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.53 Total: 15.43 kcal Atomic # 7 Polarization: -99.03 SS G_CDS: -4.79 Total: -103.82 kcal Atomic # 8 Polarization: -38.17 SS G_CDS: -0.07 Total: -38.25 kcal Atomic # 14 Polarization: 40.66 SS G_CDS: 2.03 Total: 42.69 kcal Total: -68.13 4.03 -64.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602081077.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.768 kcal (2) G-P(sol) polarization free energy of solvation -68.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds