Wall clock time and date at job start Sun Mar 29 2020 21:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53007 * 109.47258 * 2 1 4 4 H 1.08999 * 109.46696 * 304.89961 * 3 2 1 5 5 C 1.50697 * 109.47308 * 184.89999 * 3 2 1 6 6 H 1.07994 * 120.00058 * 245.45680 * 5 3 2 7 7 C 1.37880 * 119.99990 * 65.44972 * 5 3 2 8 8 N 1.31512 * 119.99976 * 9.47630 * 7 5 3 9 9 Si 1.86801 * 119.99998 * 189.46927 * 7 5 3 10 10 H 1.48497 * 109.47155 * 84.99784 * 9 7 5 11 11 H 1.48502 * 109.47314 * 204.99894 * 9 7 5 12 12 H 1.48497 * 109.47136 * 324.99768 * 9 7 5 13 13 N 1.46502 * 109.46950 * 64.89839 * 3 2 1 14 14 C 1.34770 * 120.00027 * 275.00241 * 13 3 2 15 15 O 1.21680 * 120.00250 * 0.02562 * 14 13 3 16 16 C 1.46768 * 119.99940 * 180.02562 * 14 13 3 17 17 C 1.36665 * 126.84400 * 180.02562 * 16 14 13 18 18 N 1.33326 * 107.78281 * 179.74255 * 17 16 14 19 19 C 1.30854 * 109.68179 * 0.39198 * 18 17 16 20 20 N 1.34491 * 109.17136 * 359.60413 * 19 18 17 21 21 H 0.96995 * 126.47565 * 180.26994 * 20 19 18 22 22 H 1.09001 * 109.47509 * 299.99781 * 1 2 3 23 23 H 1.09000 * 109.47265 * 60.00172 * 1 2 3 24 24 H 1.09007 * 109.47221 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47509 * 240.00219 * 2 1 3 26 26 H 1.09000 * 109.47265 * 119.99828 * 2 1 3 27 27 H 0.97004 * 119.99907 * 180.02562 * 8 7 5 28 28 H 0.97006 * 119.99559 * 95.00044 * 13 3 2 29 29 H 1.07995 * 126.10510 * 359.93756 * 17 16 14 30 30 H 1.08008 * 125.41181 * 179.86231 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6067 1.9810 -0.8429 5 6 3.5420 1.4443 -0.1214 6 1 4.1492 1.8090 0.6939 7 6 4.1411 0.9801 -1.2732 8 7 3.4097 0.7116 -2.3326 9 14 5.9919 0.7328 -1.3289 10 1 6.3289 -0.6066 -0.7835 11 1 6.4619 0.8275 -2.7344 12 1 6.6561 1.7809 -0.5132 13 7 1.6503 2.0982 1.2508 14 6 0.4328 2.6652 1.3636 15 8 -0.3429 2.6320 0.4267 16 6 0.0427 3.3225 2.6165 17 6 -1.1483 3.9376 2.8829 18 7 -1.0980 4.3984 4.1330 19 6 0.0643 4.1122 4.6617 20 7 0.8060 3.4424 3.7617 21 1 1.7066 3.1066 3.8922 22 1 -0.3634 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.8932 -0.5138 0.8900 27 1 3.8311 0.3846 -3.1428 28 1 2.2686 2.1243 1.9978 29 1 -1.9825 4.0307 2.2033 30 1 0.3766 4.3691 5.6632 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613038633.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:33 Heat of formation + Delta-G solvation = 10.283881 kcal Electronic energy + Delta-G solvation = -15147.925597 eV Core-core repulsion = 12557.884947 eV Total energy + Delta-G solvation = -2590.040651 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.98341 -38.76564 -35.14690 -32.95991 -32.16656 -31.10778 -29.47472 -27.04089 -23.64469 -22.65211 -21.32329 -20.42776 -19.54158 -18.84640 -16.61658 -15.62274 -15.34070 -15.24354 -14.44169 -14.18719 -13.95464 -13.40775 -13.26968 -12.75764 -12.15535 -11.55505 -11.43828 -11.09657 -10.86094 -10.45763 -10.33912 -10.19379 -10.09797 -9.78730 -9.27381 -9.20284 -8.56544 -8.52166 -7.97199 -6.22467 -4.28851 1.58142 3.01680 3.02981 3.19153 3.26243 3.27204 3.86656 3.95326 4.30711 4.63725 5.10713 5.11580 5.46452 5.65159 5.90317 6.28882 6.33089 6.52960 6.65559 6.92151 7.08478 7.21142 7.25708 7.29211 7.50684 7.60787 7.73627 7.95705 7.98796 8.50659 8.68385 8.94324 9.37002 10.85697 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.039305 B = 0.007368 C = 0.006576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.213084 B = 3799.171026 C = 4257.154558 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.120 4.120 3 C 0.269 3.731 4 H 0.060 0.940 5 C -0.542 4.542 6 H 0.060 0.940 7 C 0.071 3.929 8 N -0.877 5.877 9 Si 0.898 3.102 10 H -0.278 1.278 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.704 5.704 14 C 0.577 3.423 15 O -0.530 6.530 16 C -0.070 4.070 17 C 0.050 3.950 18 N -0.503 5.503 19 C 0.199 3.801 20 N -0.554 5.554 21 H 0.423 0.577 22 H 0.041 0.959 23 H 0.053 0.947 24 H 0.025 0.975 25 H 0.081 0.919 26 H 0.034 0.966 27 H 0.266 0.734 28 H 0.381 0.619 29 H 0.181 0.819 30 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.785 2.597 11.218 11.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.159 4.159 3 C 0.167 3.833 4 H 0.077 0.923 5 C -0.580 4.580 6 H 0.078 0.922 7 C -0.134 4.134 8 N -0.513 5.513 9 Si 0.726 3.274 10 H -0.204 1.204 11 H -0.211 1.211 12 H -0.200 1.200 13 N -0.351 5.351 14 C 0.361 3.639 15 O -0.407 6.407 16 C -0.187 4.187 17 C -0.103 4.103 18 N -0.223 5.223 19 C -0.085 4.085 20 N -0.159 5.159 21 H 0.261 0.739 22 H 0.060 0.940 23 H 0.072 0.928 24 H 0.044 0.956 25 H 0.099 0.901 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.213 0.787 29 H 0.198 0.802 30 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -2.964 2.900 10.657 11.436 hybrid contribution 2.491 -0.771 0.068 2.609 sum -0.473 2.129 10.725 10.945 Atomic orbital electron populations 1.21858 0.97891 0.98385 1.01612 1.21860 0.93101 0.99683 1.01258 1.18868 0.94498 0.88989 0.80896 0.92254 1.21128 0.90403 1.44530 1.01919 0.92203 1.24881 0.98546 0.95024 0.94924 1.69977 1.35852 1.43353 1.02158 0.86520 0.84843 0.78699 0.77388 1.20375 1.21056 1.19962 1.46445 1.14091 1.55968 1.18644 1.16883 0.83093 0.78947 0.84972 1.90830 1.51656 1.60041 1.38211 1.21789 0.95565 1.11633 0.89723 1.22585 0.96654 0.97810 0.93228 1.70178 1.19346 1.23780 1.08964 1.25058 0.88474 0.97839 0.97104 1.43439 1.16627 1.43712 1.12128 0.73879 0.94045 0.92775 0.95603 0.90057 0.94745 0.92405 0.78703 0.80197 0.77280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.51 37.15 0.32 -2.72 16 2 C -0.12 -2.79 5.50 -26.73 -0.15 -2.94 16 3 C 0.27 6.53 2.11 -69.08 -0.15 6.38 16 4 H 0.06 1.69 7.52 -51.93 -0.39 1.30 16 5 C -0.54 -13.82 8.66 -34.44 -0.30 -14.12 16 6 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 7 C 0.07 1.85 5.16 -17.82 -0.09 1.76 16 8 N -0.88 -24.28 12.16 55.43 0.67 -23.60 16 9 Si 0.90 20.05 29.55 -169.99 -5.02 15.03 16 10 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 13 N -0.70 -13.93 5.02 -56.21 -0.28 -14.21 16 14 C 0.58 11.36 6.35 -12.82 -0.08 11.27 16 15 O -0.53 -12.23 14.03 5.21 0.07 -12.15 16 16 C -0.07 -1.12 7.08 -82.14 -0.58 -1.70 16 17 C 0.05 0.79 11.66 -17.47 -0.20 0.59 16 18 N -0.50 -7.34 11.20 -14.43 -0.16 -7.50 16 19 C 0.20 2.18 13.00 -90.58 -1.18 1.00 16 20 N -0.55 -6.43 6.07 -10.78 -0.07 -6.50 16 21 H 0.42 3.62 8.32 -40.82 -0.34 3.28 16 22 H 0.04 0.88 5.65 -51.93 -0.29 0.59 16 23 H 0.05 1.25 7.84 -51.93 -0.41 0.84 16 24 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 2.08 6.80 -51.93 -0.35 1.73 16 26 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.38 6.33 7.77 -40.82 -0.32 6.01 16 29 H 0.18 2.72 8.06 -52.49 -0.42 2.29 16 30 H 0.21 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 259.72 15.07 3.91 3.91 Total: -1.00 -31.24 259.72 -6.61 -37.86 By element: Atomic # 1 Polarization: 10.98 SS G_CDS: -3.33 Total: 7.64 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -2.41 Total: -0.48 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: 0.16 Total: -51.81 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 3.91 Total: 3.91 kcal Total: -31.24 -6.61 -37.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613038633.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.141 kcal (2) G-P(sol) polarization free energy of solvation -31.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds