Wall clock time and date at job start Sun Mar 29 2020 21:49:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46960 * 2 1 4 4 C 1.36015 * 126.49639 * 265.02678 * 3 2 1 5 5 C 1.35577 * 107.08086 * 179.97438 * 4 3 2 6 6 N 1.33085 * 108.40269 * 0.23873 * 5 4 3 7 7 C 1.31694 * 109.21967 * 359.60178 * 6 5 4 8 8 C 1.47217 * 125.86272 * 180.12205 * 7 6 5 9 9 O 1.21664 * 120.00325 * 176.34260 * 8 7 6 10 10 N 1.34780 * 119.99663 * 356.34177 * 8 7 6 11 11 C 1.46494 * 120.00279 * 3.80738 * 10 8 7 12 12 C 1.36757 * 119.99851 * 183.81295 * 10 8 7 13 13 H 1.07997 * 120.00065 * 26.60113 * 12 10 8 14 14 C 1.39095 * 119.99929 * 206.60101 * 12 10 8 15 15 N 1.31332 * 120.00307 * 11.17824 * 14 12 10 16 16 Si 1.86804 * 119.99875 * 191.18063 * 14 12 10 17 17 H 1.48491 * 109.47265 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46993 * 120.00250 * 16 14 12 19 19 H 1.48499 * 109.47033 * 239.99730 * 16 14 12 20 20 H 1.09000 * 109.46930 * 179.97438 * 1 2 3 21 21 H 1.08995 * 109.46886 * 300.00028 * 1 2 3 22 22 H 1.09000 * 109.46976 * 59.99362 * 1 2 3 23 23 H 1.09007 * 109.46847 * 240.00436 * 2 1 3 24 24 H 1.08991 * 109.47108 * 120.00454 * 2 1 3 25 25 H 1.08004 * 126.45972 * 359.94309 * 4 3 2 26 26 H 1.07998 * 125.79611 * 179.97438 * 5 4 3 27 27 H 1.09011 * 109.46854 * 92.82930 * 11 10 8 28 28 H 1.08996 * 109.47437 * 212.82683 * 11 10 8 29 29 H 1.08999 * 109.47491 * 332.83443 * 11 10 8 30 30 H 0.97000 * 120.00353 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3774 2.1124 -1.0893 5 6 2.7662 3.3311 -0.6404 6 7 2.6542 3.3458 0.6857 7 6 2.1989 2.1799 1.0952 8 6 1.9359 1.7993 2.4928 9 8 1.4515 0.7125 2.7465 10 7 2.2318 2.6549 3.4913 11 6 2.7369 3.9948 3.1822 12 6 2.0605 2.2722 4.7930 13 1 2.1129 1.2270 5.0599 14 6 1.8188 3.2290 5.7732 15 7 1.5372 4.4648 5.4293 16 14 1.8949 2.7563 7.5788 17 1 2.2294 1.3146 7.6993 18 1 2.9388 3.5647 8.2586 19 1 0.5775 3.0141 8.2139 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8899 23 1 1.8934 -0.5138 -0.8901 24 1 1.8934 -0.5139 0.8899 25 1 2.3571 1.7838 -2.1179 26 1 3.1124 4.1495 -1.2542 27 1 1.9030 4.6952 3.1336 28 1 3.4312 4.3100 3.9610 29 1 3.2521 3.9764 2.2218 30 1 1.3683 5.1320 6.1128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619259689.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:02 Heat of formation + Delta-G solvation = 46.731081 kcal Electronic energy + Delta-G solvation = -15509.276921 eV Core-core repulsion = 12920.816740 eV Total energy + Delta-G solvation = -2588.460181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.59662 -37.92283 -35.10917 -34.10053 -31.66588 -29.89390 -29.01194 -26.05629 -24.80343 -23.46939 -21.77880 -20.85917 -18.72419 -16.99645 -16.44469 -15.54340 -15.17434 -14.53260 -14.34918 -13.98231 -13.56303 -13.33334 -13.23869 -12.40889 -12.26932 -11.81493 -11.62030 -11.44514 -11.15851 -11.04228 -10.83344 -10.36544 -10.32206 -9.30625 -9.09065 -8.81234 -8.54866 -7.98378 -7.59335 -6.31713 -3.90239 2.13847 3.10467 3.13960 3.24961 3.32125 3.35451 4.11811 4.41190 4.80269 4.96942 5.10226 5.19403 5.33353 5.51743 5.54538 5.76730 5.90682 5.95214 6.08379 6.41659 6.67836 6.95981 7.09147 7.34207 7.50501 7.53582 7.71867 8.11945 8.38508 8.59296 9.14314 9.39165 9.97693 10.67649 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.041152 B = 0.008688 C = 0.007490 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.244246 B = 3221.961129 C = 3737.322696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.104 3.896 3 N -0.428 5.428 4 C -0.064 4.064 5 C -0.038 4.038 6 N -0.461 5.461 7 C 0.196 3.804 8 C 0.501 3.499 9 O -0.597 6.597 10 N -0.400 5.400 11 C 0.081 3.919 12 C -0.306 4.306 13 H 0.101 0.899 14 C 0.035 3.965 15 N -0.862 5.862 16 Si 0.930 3.070 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.280 1.280 20 H 0.071 0.929 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.080 0.920 24 H 0.109 0.891 25 H 0.170 0.830 26 H 0.167 0.833 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.094 0.906 30 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.330 -3.464 -10.020 10.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.109 5.109 4 C -0.200 4.200 5 C -0.190 4.190 6 N -0.182 5.182 7 C -0.064 4.064 8 C 0.288 3.712 9 O -0.484 6.484 10 N -0.115 5.115 11 C -0.063 4.063 12 C -0.435 4.435 13 H 0.118 0.882 14 C -0.171 4.171 15 N -0.499 5.499 16 Si 0.756 3.244 17 H -0.190 1.190 18 H -0.205 1.205 19 H -0.206 1.206 20 H 0.090 0.910 21 H 0.093 0.907 22 H 0.070 0.930 23 H 0.098 0.902 24 H 0.127 0.873 25 H 0.187 0.813 26 H 0.184 0.816 27 H 0.076 0.924 28 H 0.069 0.931 29 H 0.112 0.888 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.190 -3.306 -9.237 9.883 hybrid contribution -0.223 -0.522 0.159 0.590 sum 0.967 -3.828 -9.078 9.900 Atomic orbital electron populations 1.22044 0.94143 1.02678 1.02997 1.21922 0.96022 0.79444 1.04356 1.45410 1.46602 1.12647 1.06254 1.22732 1.10161 0.94512 0.92615 1.22435 1.07410 0.97018 0.92102 1.70424 1.17817 1.19126 1.10841 1.23535 1.04691 0.87137 0.91081 1.16392 0.86374 0.87424 0.81008 1.90597 1.51197 1.23768 1.82872 1.43300 1.50871 1.12714 1.04568 1.22354 0.99637 0.83471 1.00819 1.19731 1.47533 0.95107 0.81153 0.88171 1.25508 0.95491 0.95199 1.00887 1.70020 1.42994 1.02554 1.34313 0.85813 0.77945 0.79077 0.81562 1.19034 1.20465 1.20561 0.91046 0.90696 0.92977 0.90151 0.87321 0.81255 0.81573 0.92359 0.93134 0.88836 0.92006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.34 10.18 37.16 0.38 -1.96 16 2 C 0.10 1.60 6.16 -4.04 -0.02 1.57 16 3 N -0.43 -7.78 2.78 -114.43 -0.32 -8.10 16 4 C -0.06 -0.97 11.56 -16.65 -0.19 -1.17 16 5 C -0.04 -0.64 11.85 -17.96 -0.21 -0.86 16 6 N -0.46 -9.77 7.51 -11.28 -0.08 -9.85 16 7 C 0.20 4.41 7.54 -154.47 -1.16 3.25 16 8 C 0.50 13.19 7.61 -12.61 -0.10 13.09 16 9 O -0.60 -16.41 14.09 5.22 0.07 -16.33 16 10 N -0.40 -11.03 3.00 -123.51 -0.37 -11.40 16 11 C 0.08 2.04 8.26 59.84 0.49 2.54 16 12 C -0.31 -8.74 9.17 -15.04 -0.14 -8.88 16 13 H 0.10 2.91 7.52 -52.49 -0.39 2.52 16 14 C 0.04 0.95 5.12 -17.45 -0.09 0.86 16 15 N -0.86 -23.72 10.84 55.50 0.60 -23.12 16 16 Si 0.93 20.79 29.57 -169.99 -5.03 15.76 16 17 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 18 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 21 H 0.07 1.38 7.66 -51.93 -0.40 0.98 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 23 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.11 1.90 6.73 -51.93 -0.35 1.55 16 25 H 0.17 1.81 8.06 -52.48 -0.42 1.39 16 26 H 0.17 2.18 8.06 -52.49 -0.42 1.76 16 27 H 0.06 1.56 7.41 -51.92 -0.38 1.17 16 28 H 0.05 1.30 7.38 -51.93 -0.38 0.91 16 29 H 0.09 2.22 4.55 -55.96 -0.25 1.96 16 30 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 256.63 15.07 3.87 3.87 Total: -1.00 -31.96 256.63 -5.71 -37.67 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -3.41 Total: 3.05 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: -1.04 Total: 8.45 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: -0.17 Total: -52.47 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.07 Total: -16.33 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -31.96 -5.71 -37.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619259689.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.406 kcal (2) G-P(sol) polarization free energy of solvation -31.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds