Wall clock time and date at job start Sun Mar 29 2020 22:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31357 * 1 3 3 Si 1.86795 * 119.99835 * 2 1 4 4 H 1.48507 * 109.47201 * 270.00065 * 3 2 1 5 5 H 1.48500 * 109.47196 * 30.00146 * 3 2 1 6 6 H 1.48503 * 109.46931 * 150.00268 * 3 2 1 7 7 C 1.39069 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00204 * 180.02562 * 7 2 1 9 9 N 1.36827 * 120.00240 * 359.97438 * 7 2 1 10 10 C 1.34776 * 119.99676 * 180.02562 * 9 7 2 11 11 O 1.21652 * 120.00679 * 359.97438 * 10 9 7 12 12 C 1.46957 * 119.99580 * 180.02562 * 10 9 7 13 13 C 1.33121 * 119.99958 * 186.63067 * 12 10 9 14 14 C 1.50698 * 119.99901 * 16.61942 * 13 12 10 15 15 C 1.53005 * 109.47043 * 253.96598 * 14 13 12 16 16 C 1.52997 * 109.47169 * 180.02562 * 15 14 13 17 17 C 1.52995 * 109.47197 * 60.00003 * 16 15 14 18 18 C 1.53001 * 109.47318 * 300.00295 * 17 16 15 19 19 C 1.52997 * 109.47228 * 59.99724 * 18 17 16 20 20 H 0.96998 * 120.00046 * 0.02562 * 1 2 3 21 21 H 0.96996 * 119.99482 * 0.02562 * 9 7 2 22 22 H 1.08004 * 119.99897 * 6.35682 * 12 10 9 23 23 H 1.07998 * 119.99727 * 196.61872 * 13 12 10 24 24 H 1.08999 * 109.47396 * 13.96357 * 14 13 12 25 25 H 1.09001 * 109.47207 * 300.00488 * 15 14 13 26 26 H 1.08998 * 109.46836 * 60.00309 * 15 14 13 27 27 H 1.09010 * 109.47175 * 300.00244 * 16 15 14 28 28 H 1.08993 * 109.47450 * 180.02562 * 16 15 14 29 29 H 1.08997 * 109.47603 * 180.02562 * 17 16 15 30 30 H 1.08999 * 109.47254 * 59.99747 * 17 16 15 31 31 H 1.09001 * 109.46889 * 299.99526 * 18 17 16 32 32 H 1.09006 * 109.47337 * 179.97438 * 18 17 16 33 33 H 1.08997 * 109.47366 * 180.02562 * 19 18 17 34 34 H 1.09001 * 109.47347 * 60.00083 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3136 0.0000 0.0000 3 14 2.2475 1.6177 0.0000 4 1 2.4950 2.0465 -1.4001 5 1 1.4449 2.6526 0.7001 6 1 3.5451 1.4401 0.7000 7 6 2.0089 -1.2044 -0.0005 8 1 3.0889 -1.2044 -0.0001 9 7 1.3248 -2.3894 -0.0005 10 6 1.9988 -3.5565 -0.0005 11 8 3.2153 -3.5565 -0.0010 12 6 1.2640 -4.8292 -0.0011 13 6 1.9229 -5.9782 0.1320 14 6 3.3377 -5.9797 0.6509 15 6 4.3039 -6.2546 -0.5032 16 6 5.7403 -6.2568 0.0236 17 6 5.8920 -7.3468 1.0864 18 6 4.9259 -7.0721 2.2405 19 6 3.4895 -7.0699 1.7136 20 1 -0.4850 0.8400 -0.0004 21 1 0.3548 -2.3893 -0.0005 22 1 0.1890 -4.8320 -0.1051 23 1 1.4434 -6.9093 -0.1318 24 1 3.5644 -5.0086 1.0910 25 1 4.0772 -7.2257 -0.9434 26 1 4.1955 -5.4782 -1.2605 27 1 5.9672 -5.2858 0.4641 28 1 6.4286 -6.4521 -0.7986 29 1 6.9152 -7.3481 1.4621 30 1 5.6651 -8.3177 0.6460 31 1 5.1528 -6.1012 2.6809 32 1 5.0337 -7.8490 2.9974 33 1 2.8012 -6.8737 2.5357 34 1 3.2625 -8.0408 1.2731 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000735468497.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:36 Heat of formation + Delta-G solvation = -46.801190 kcal Electronic energy + Delta-G solvation = -15278.105659 eV Core-core repulsion = 12789.129957 eV Total energy + Delta-G solvation = -2488.975702 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.87371 -37.53567 -34.20608 -32.82640 -31.26900 -30.35565 -29.11587 -25.25846 -22.70657 -22.16775 -20.80750 -19.40642 -18.48591 -17.48581 -16.08600 -15.02102 -14.40737 -14.30292 -13.91824 -13.79780 -13.35899 -13.15526 -12.78225 -12.24876 -12.16716 -11.81239 -11.53769 -11.27882 -11.13700 -10.78272 -10.69208 -10.40895 -10.24561 -10.12390 -9.93268 -9.68319 -9.42587 -8.50036 -8.05447 -7.91533 -6.46846 -3.80993 2.18321 3.19897 3.24733 3.30789 4.16246 4.39622 4.99889 5.09167 5.13784 5.17124 5.36405 5.52747 5.64344 5.72129 5.87675 5.89627 5.94270 5.96258 6.01890 6.14112 6.27711 6.34026 6.43059 6.49784 6.59952 6.64169 6.91686 6.96069 7.04850 7.40783 7.51546 8.07948 8.62266 9.16187 9.55434 10.10814 10.70562 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.041774 B = 0.006298 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.114689 B = 4444.446699 C = 4803.786848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.022 3.978 3 Si 0.931 3.069 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.269 1.269 7 C -0.295 4.295 8 H 0.105 0.895 9 N -0.551 5.551 10 C 0.459 3.541 11 O -0.589 6.589 12 C -0.187 4.187 13 C -0.104 4.104 14 C -0.073 4.073 15 C -0.094 4.094 16 C -0.117 4.117 17 C -0.117 4.117 18 C -0.117 4.117 19 C -0.111 4.111 20 H 0.273 0.727 21 H 0.393 0.607 22 H 0.110 0.890 23 H 0.106 0.894 24 H 0.119 0.881 25 H 0.043 0.957 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.398 -11.505 1.694 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.181 4.181 3 Si 0.758 3.242 4 H -0.203 1.203 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.425 4.425 8 H 0.123 0.877 9 N -0.185 5.185 10 C 0.248 3.752 11 O -0.477 6.477 12 C -0.209 4.209 13 C -0.125 4.125 14 C -0.091 4.091 15 C -0.131 4.131 16 C -0.154 4.154 17 C -0.154 4.154 18 C -0.155 4.155 19 C -0.149 4.149 20 H 0.083 0.917 21 H 0.226 0.774 22 H 0.128 0.872 23 H 0.124 0.876 24 H 0.137 0.863 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.084 0.916 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 5.049 -11.288 1.697 12.482 hybrid contribution -0.482 0.808 -0.088 0.945 sum 4.567 -10.480 1.609 11.544 Atomic orbital electron populations 1.69595 1.06076 1.28379 1.49538 1.25337 0.95625 0.99922 0.97198 0.85838 0.79275 0.80636 0.78462 1.20320 1.20862 1.19321 1.19769 0.93580 0.82410 1.46784 0.87685 1.41912 1.09314 1.04906 1.62318 1.18093 0.87793 0.83861 0.85428 1.90522 1.13363 1.86913 1.56925 1.22813 0.99124 0.94224 1.04695 1.23316 0.96625 0.96371 0.96171 1.20700 0.91583 1.01492 0.95331 1.21309 0.93582 1.00223 0.98019 1.21496 0.97127 0.99101 0.97725 1.21525 0.98520 0.98843 0.96532 1.21497 0.95280 1.01408 0.97288 1.21595 0.96097 0.98675 0.98514 0.91702 0.77391 0.87163 0.87621 0.86338 0.93795 0.91259 0.91566 0.92911 0.92779 0.92609 0.91897 0.92768 0.92538 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.41 13.05 55.50 0.72 -23.68 16 2 C 0.02 0.58 5.50 -17.45 -0.10 0.48 16 3 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 4 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 6 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 7 C -0.30 -8.25 9.68 -15.01 -0.15 -8.39 16 8 H 0.11 3.05 7.15 -52.49 -0.38 2.67 16 9 N -0.55 -14.25 5.27 -12.10 -0.06 -14.31 16 10 C 0.46 11.08 7.47 -12.73 -0.10 10.98 16 11 O -0.59 -15.45 12.16 5.23 0.06 -15.39 16 12 C -0.19 -3.60 10.00 -37.83 -0.38 -3.98 16 13 C -0.10 -1.75 8.81 -36.09 -0.32 -2.07 16 14 C -0.07 -1.25 1.64 -91.77 -0.15 -1.40 16 15 C -0.09 -1.53 4.92 -26.73 -0.13 -1.66 16 16 C -0.12 -1.72 5.92 -26.74 -0.16 -1.88 16 17 C -0.12 -1.46 5.92 -26.73 -0.16 -1.62 16 18 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 19 C -0.11 -1.56 5.18 -26.73 -0.14 -1.70 16 20 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 21 H 0.39 9.79 7.88 -40.82 -0.32 9.47 16 22 H 0.11 1.85 8.06 -52.48 -0.42 1.43 16 23 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 24 H 0.12 2.51 5.33 -51.93 -0.28 2.23 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.07 1.32 7.50 -51.93 -0.39 0.93 16 27 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 277.88 15.07 4.19 4.19 Total: -1.00 -28.94 277.88 -7.19 -36.13 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: -5.15 Total: 10.05 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -1.93 Total: -12.93 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.66 Total: -38.00 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.06 Total: -15.39 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.94 -7.19 -36.13 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000735468497.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.673 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds