Wall clock time and date at job start Sun Mar 29 2020 21:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46495 * 109.47538 * 2 1 4 4 C 1.36828 * 119.99764 * 270.98043 * 3 2 1 5 5 H 1.07998 * 120.00469 * 6.10541 * 4 3 2 6 6 C 1.38790 * 119.99735 * 186.10613 * 4 3 2 7 7 N 1.31597 * 119.99987 * 18.39937 * 6 4 3 8 8 Si 1.86804 * 119.99687 * 198.39758 * 6 4 3 9 9 H 1.48501 * 109.47281 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.46944 * 120.00159 * 8 6 4 11 11 H 1.48497 * 109.46870 * 239.99800 * 8 6 4 12 12 C 1.39383 * 120.00072 * 90.97619 * 3 2 1 13 13 C 1.39031 * 120.10027 * 90.26093 * 12 3 2 14 14 C 1.38063 * 119.93496 * 180.25300 * 13 12 3 15 15 C 1.38342 * 120.13309 * 359.49015 * 14 13 12 16 16 C 1.38305 * 120.20003 * 0.25288 * 15 14 13 17 17 C 1.50695 * 119.96982 * 179.97438 * 16 15 14 18 18 C 1.38257 * 120.06136 * 0.02562 * 16 15 14 19 19 F 1.35102 * 120.06642 * 179.97438 * 18 16 15 20 20 H 1.09004 * 109.46894 * 60.00031 * 1 2 3 21 21 H 1.09003 * 109.47450 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47583 * 300.00219 * 1 2 3 23 23 H 1.09006 * 109.47365 * 239.99282 * 2 1 3 24 24 H 1.09004 * 109.46894 * 119.99969 * 2 1 3 25 25 H 0.97006 * 119.99937 * 180.02562 * 7 6 4 26 26 H 1.08003 * 120.03326 * 359.97438 * 13 12 3 27 27 H 1.08001 * 119.93357 * 179.76313 * 14 13 12 28 28 H 1.08003 * 119.90036 * 180.28001 * 15 14 13 29 29 H 1.08999 * 109.47033 * 89.99811 * 17 16 15 30 30 H 1.08995 * 109.47291 * 210.00027 * 17 16 15 31 31 H 1.09006 * 109.47299 * 330.00132 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2273 2.0328 -1.1848 5 1 1.9400 1.5666 -2.1156 6 6 2.8086 3.2932 -1.1904 7 7 3.4807 3.7125 -0.1396 8 14 2.6368 4.3942 -2.6897 9 1 1.8404 3.6941 -3.7294 10 1 1.9499 5.6528 -2.3033 11 1 3.9840 4.7107 -3.2283 12 6 2.2701 2.0313 1.2069 13 6 3.5314 1.9601 1.7874 14 6 3.7756 2.6011 2.9856 15 6 2.7706 3.3229 3.6045 16 6 1.5154 3.4019 3.0292 17 6 0.4243 4.1891 3.7081 18 6 1.2603 2.7584 1.8324 19 9 0.0340 2.8350 1.2707 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8899 23 1 1.8933 -0.5140 -0.8900 24 1 1.8933 -0.5139 0.8900 25 1 3.8866 4.5935 -0.1433 26 1 4.3182 1.4002 1.3038 27 1 4.7543 2.5426 3.4385 28 1 2.9670 3.8266 4.5394 29 1 0.4496 5.2211 3.3584 30 1 -0.5437 3.7483 3.4700 31 1 0.5780 4.1672 4.7871 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879414994.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:15 Heat of formation + Delta-G solvation = -17.062422 kcal Electronic energy + Delta-G solvation = -15869.007281 eV Core-core repulsion = 13257.860845 eV Total energy + Delta-G solvation = -2611.146437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.36972 -39.86409 -37.43829 -33.84271 -33.10910 -31.33718 -29.55348 -27.54283 -26.08955 -23.76606 -22.41947 -21.63221 -19.17350 -17.98171 -17.28222 -16.80707 -16.20031 -16.11918 -15.43073 -15.18760 -14.48212 -14.23659 -14.06266 -13.94162 -13.70899 -13.35092 -12.99859 -12.85241 -12.67270 -12.47546 -12.24755 -12.09769 -11.99932 -11.69547 -11.53087 -10.83711 -9.26608 -9.09262 -8.98937 -7.67164 -5.30755 0.76052 0.85900 1.41045 1.45006 1.52596 2.46397 3.10188 3.29431 3.48352 3.90559 4.16503 4.31599 4.33710 4.61168 4.65365 4.68846 4.77249 4.82651 4.93490 4.97687 5.05923 5.16959 5.36605 5.49677 5.56600 5.62769 5.68656 5.85442 6.09669 6.17288 6.45178 7.18966 7.87024 8.17339 9.13314 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.022512 B = 0.013965 C = 0.011826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.502848 B = 2004.511289 C = 2367.179854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.267 4.267 5 H 0.080 0.920 6 C -0.046 4.046 7 N -0.905 5.905 8 Si 0.956 3.044 9 H -0.271 1.271 10 H -0.299 1.299 11 H -0.289 1.289 12 C 0.226 3.774 13 C -0.066 4.066 14 C -0.131 4.131 15 C -0.122 4.122 16 C -0.142 4.142 17 C -0.098 4.098 18 C 0.034 3.966 19 F -0.161 7.161 20 H 0.036 0.964 21 H 0.077 0.923 22 H 0.034 0.966 23 H 0.060 0.940 24 H 0.053 0.947 25 H 0.247 0.753 26 H 0.095 0.905 27 H 0.136 0.864 28 H 0.149 0.851 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 -2.796 7.216 8.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.017 3.983 3 N -0.302 5.302 4 C -0.395 4.395 5 H 0.098 0.902 6 C -0.242 4.242 7 N -0.549 5.549 8 Si 0.785 3.215 9 H -0.195 1.195 10 H -0.226 1.226 11 H -0.216 1.216 12 C 0.131 3.869 13 C -0.086 4.086 14 C -0.150 4.150 15 C -0.140 4.140 16 C -0.143 4.143 17 C -0.155 4.155 18 C 0.012 3.988 19 F -0.140 7.140 20 H 0.055 0.945 21 H 0.095 0.905 22 H 0.054 0.946 23 H 0.078 0.922 24 H 0.072 0.928 25 H 0.057 0.943 26 H 0.114 0.886 27 H 0.154 0.846 28 H 0.166 0.834 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.312 -2.692 7.137 7.970 hybrid contribution -0.150 0.899 -1.352 1.630 sum -2.462 -1.793 5.785 6.538 Atomic orbital electron populations 1.22195 0.97679 1.01114 1.00550 1.21023 0.93514 0.83398 1.00346 1.41692 1.76168 1.11491 1.00861 1.19475 1.34937 0.99240 0.85892 0.90215 1.25430 0.99150 0.99577 1.00044 1.70187 1.35631 1.18833 1.30286 0.85366 0.77080 0.79057 0.79989 1.19531 1.22593 1.21611 1.17179 0.91265 0.92185 0.86226 1.21049 0.94814 0.98668 0.94116 1.21070 0.99629 0.98760 0.95509 1.20849 0.91313 1.00741 1.01100 1.19995 0.98157 1.01473 0.94686 1.20608 0.95396 0.98484 1.01019 1.18650 0.81129 1.03772 0.95273 1.91283 1.41779 1.95277 1.85657 0.94454 0.90466 0.94635 0.92197 0.92825 0.94274 0.88637 0.84593 0.83361 0.91911 0.92640 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 10.15 71.98 0.73 -5.09 16 2 C 0.14 5.83 6.37 86.38 0.55 6.38 16 3 N -0.58 -29.60 2.38 -511.66 -1.22 -30.82 16 4 C -0.27 -14.74 9.74 84.05 0.82 -13.92 16 5 H 0.08 4.29 7.89 -2.91 -0.02 4.27 16 6 C -0.05 -2.55 5.26 84.86 0.45 -2.11 16 7 N -0.90 -51.70 9.74 21.65 0.21 -51.49 16 8 Si 0.96 46.01 29.59 68.60 2.03 48.04 16 9 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 10 H -0.30 -14.73 7.11 99.48 0.71 -14.03 16 11 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 12 C 0.23 11.25 3.05 38.38 0.12 11.36 16 13 C -0.07 -3.03 8.09 22.42 0.18 -2.85 16 14 C -0.13 -5.01 10.04 22.25 0.22 -4.79 16 15 C -0.12 -4.37 9.70 22.31 0.22 -4.16 16 16 C -0.14 -5.68 5.88 -19.85 -0.12 -5.80 16 17 C -0.10 -3.11 9.83 71.23 0.70 -2.41 16 18 C 0.03 1.61 7.26 22.52 0.16 1.77 16 19 F -0.16 -8.06 15.05 44.97 0.68 -7.38 16 20 H 0.04 1.48 8.14 -2.38 -0.02 1.47 16 21 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 22 H 0.03 1.41 6.98 -2.39 -0.02 1.39 16 23 H 0.06 2.34 8.05 -2.38 -0.02 2.33 16 24 H 0.05 2.04 8.04 -2.38 -0.02 2.02 16 25 H 0.25 13.98 8.31 -92.70 -0.77 13.21 16 26 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 27 H 0.14 4.27 8.06 -2.91 -0.02 4.25 16 28 H 0.15 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.05 1.77 7.63 -2.39 -0.02 1.75 16 31 H 0.09 2.29 8.09 -2.38 -0.02 2.27 16 Total: -1.00 -63.26 267.05 6.84 -56.42 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: 1.11 Total: 6.85 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 4.03 Total: -21.62 kcal Atomic # 7 Polarization: -81.30 SS G_CDS: -1.01 Total: -82.31 kcal Atomic # 9 Polarization: -8.06 SS G_CDS: 0.68 Total: -7.38 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -63.26 6.84 -56.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879414994.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.354 kcal (2) G-P(sol) polarization free energy of solvation -63.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds