Wall clock time and date at job start Sun Mar 29 2020 22:23:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34508 * 126.58367 * 2 1 4 4 O 1.34307 * 108.42475 * 179.71748 * 3 2 1 5 5 C 1.34299 * 109.47180 * 0.43487 * 4 3 2 6 6 C 1.50704 * 125.78927 * 179.82499 * 5 4 3 7 7 N 1.46898 * 109.47041 * 269.69633 * 6 5 4 8 8 C 1.46906 * 110.99888 * 179.97438 * 7 6 5 9 9 C 1.52993 * 109.47378 * 180.02562 * 8 7 6 10 10 C 1.52996 * 109.47473 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.47239 * 179.97438 * 10 9 8 12 12 H 1.08003 * 119.99960 * 0.02562 * 11 10 9 13 13 C 1.37882 * 119.99798 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00253 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 119.99629 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.46921 * 90.00726 * 15 13 11 17 17 H 1.48500 * 109.47163 * 210.00394 * 15 13 11 18 18 H 1.48494 * 109.47628 * 330.00590 * 15 13 11 19 19 C 1.34515 * 108.42527 * 359.56719 * 5 4 3 20 20 H 1.09002 * 109.47037 * 270.02658 * 1 2 3 21 21 H 1.09002 * 109.46715 * 30.02409 * 1 2 3 22 22 H 1.09001 * 109.47459 * 150.02619 * 1 2 3 23 23 H 1.08007 * 125.78777 * 359.94579 * 3 2 1 24 24 H 1.08997 * 109.46924 * 149.69544 * 6 5 4 25 25 H 1.08995 * 109.46962 * 29.69699 * 6 5 4 26 26 H 1.00901 * 111.00121 * 56.04537 * 7 6 5 27 27 H 1.09004 * 109.47040 * 299.99934 * 8 7 6 28 28 H 1.09000 * 109.47033 * 59.99886 * 8 7 6 29 29 H 1.09004 * 109.46862 * 299.99897 * 9 8 7 30 30 H 1.09004 * 109.46998 * 59.99419 * 9 8 7 31 31 H 1.08996 * 109.47261 * 300.00171 * 10 9 8 32 32 H 1.09000 * 109.46870 * 59.99782 * 10 9 8 33 33 H 0.97001 * 120.00663 * 179.97438 * 14 13 11 34 34 H 1.08000 * 126.58508 * 180.22630 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0801 0.0000 4 8 3.5848 0.6615 0.0063 5 6 3.6156 -0.6811 0.0007 6 6 4.8580 -1.5342 0.0012 7 7 5.2620 -1.8116 -1.3836 8 6 6.4730 -2.6423 -1.4223 9 6 6.8623 -2.9089 -2.8777 10 6 8.1239 -3.7735 -2.9180 11 6 8.5070 -4.0366 -4.3516 12 1 7.9105 -3.6275 -5.1537 13 6 9.6196 -4.7986 -4.6391 14 7 10.3461 -5.2962 -3.6624 15 14 10.0948 -5.1240 -6.4161 16 1 11.0120 -4.0552 -6.8868 17 1 10.7767 -6.4396 -6.5131 18 1 8.8737 -5.1359 -7.2609 19 6 2.3495 -1.1354 0.0004 20 1 -0.3633 0.0005 1.0277 21 1 -0.3633 0.8898 -0.5142 22 1 -0.3634 -0.8902 -0.5134 23 1 1.9815 2.1094 -0.0008 24 1 4.6536 -2.4734 0.5152 25 1 5.6611 -1.0061 0.5152 26 1 5.3949 -0.9550 -1.9000 27 1 7.2872 -2.1215 -0.9183 28 1 6.2802 -3.5893 -0.9181 29 1 6.0482 -3.4295 -3.3820 30 1 7.0551 -1.9617 -3.3815 31 1 8.9377 -3.2526 -2.4138 32 1 7.9314 -4.7207 -2.4141 33 1 11.1286 -5.8326 -3.8646 34 1 2.0365 -2.1691 0.0000 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885969521.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:09 Heat of formation + Delta-G solvation = -8.333021 kcal Electronic energy + Delta-G solvation = -14221.144086 eV Core-core repulsion = 11733.836489 eV Total energy + Delta-G solvation = -2487.307597 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.61032 -36.56418 -34.16017 -33.67567 -31.84328 -30.04696 -27.65100 -26.42603 -24.45609 -22.21706 -21.32041 -20.29672 -19.55762 -17.15098 -16.33040 -16.16158 -15.59467 -14.68523 -14.55307 -14.05497 -13.86720 -13.36476 -13.30391 -12.73002 -12.65493 -12.39069 -12.06612 -11.82781 -11.51348 -11.31204 -10.82832 -10.57950 -10.50509 -9.69276 -9.63063 -9.35631 -9.05861 -8.50851 -8.32827 -8.21911 -5.97982 -3.99991 1.66266 2.51974 2.95378 3.33832 3.39842 3.43929 4.42108 4.50979 4.65320 4.80640 4.91565 5.20506 5.30285 5.37898 5.42895 5.50873 5.67739 5.72135 5.76755 5.86725 6.01615 6.11923 6.29707 6.49603 6.70103 6.72716 7.10039 7.14565 7.24508 7.52909 7.70091 7.84677 8.02385 8.45710 9.07190 9.63959 11.13518 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.065003 B = 0.003682 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.644285 B = 7602.229060 C = 7754.105599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.185 4.185 3 C -0.049 4.049 4 O -0.178 6.178 5 C -0.004 4.004 6 C 0.137 3.863 7 N -0.687 5.687 8 C 0.058 3.942 9 C -0.107 4.107 10 C 0.022 3.978 11 C -0.519 4.519 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.897 5.897 15 Si 0.892 3.108 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.273 1.273 19 C -0.191 4.191 20 H 0.065 0.935 21 H 0.063 0.937 22 H 0.066 0.934 23 H 0.199 0.801 24 H 0.101 0.899 25 H 0.045 0.955 26 H 0.342 0.658 27 H 0.028 0.972 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.045 0.955 31 H 0.014 0.986 32 H 0.017 0.983 33 H 0.260 0.740 34 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.165 10.718 9.093 21.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.186 4.186 3 C -0.116 4.116 4 O -0.074 6.074 5 C -0.054 4.054 6 C 0.009 3.991 7 N -0.318 5.318 8 C -0.070 4.070 9 C -0.145 4.145 10 C -0.016 4.016 11 C -0.557 4.557 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.536 5.536 15 Si 0.720 3.280 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.211 4.211 20 H 0.083 0.917 21 H 0.082 0.918 22 H 0.085 0.915 23 H 0.215 0.785 24 H 0.119 0.881 25 H 0.063 0.937 26 H 0.160 0.840 27 H 0.046 0.954 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.170 10.242 9.067 21.179 hybrid contribution 0.833 0.383 -0.691 1.148 sum -15.336 10.625 8.376 20.451 Atomic orbital electron populations 1.20147 0.89393 1.02528 1.01836 1.20507 0.97188 0.92913 1.08024 1.23757 0.80277 0.99541 1.08054 1.84006 1.29387 1.22469 1.71507 1.22405 0.97282 0.80315 1.05429 1.20364 0.90320 0.96327 0.92129 1.60649 1.37386 1.22857 1.10954 1.22183 0.88240 0.96520 1.00029 1.21632 1.00171 1.00346 0.92379 1.19067 0.91032 0.94418 0.97040 1.21263 1.10359 1.31598 0.92513 0.92645 1.25031 0.96469 0.95874 0.97170 1.69962 1.17205 1.35190 1.31290 0.86587 0.78627 0.77534 0.85227 1.20709 1.21238 1.19832 1.21461 0.91603 0.99827 1.08164 0.91669 0.91843 0.91497 0.78476 0.88083 0.93694 0.84050 0.95402 0.91121 0.92434 0.93572 0.96763 0.96506 0.93033 0.83472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.40 36.00 0.37 -0.28 16 2 C -0.18 -2.04 6.16 -104.74 -0.65 -2.69 16 3 C -0.05 -0.52 12.01 29.41 0.35 -0.17 16 4 O -0.18 -2.33 10.65 5.71 0.06 -2.27 16 5 C 0.00 -0.05 6.83 -35.62 -0.24 -0.30 16 6 C 0.14 1.77 6.22 -4.97 -0.03 1.74 16 7 N -0.69 -10.43 6.49 -115.06 -0.75 -11.18 16 8 C 0.06 1.01 5.68 -3.82 -0.02 0.98 16 9 C -0.11 -2.25 5.41 -26.74 -0.14 -2.40 16 10 C 0.02 0.58 4.97 -27.89 -0.14 0.44 16 11 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 12 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 15 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 16 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 19 C -0.19 -2.37 10.77 -39.70 -0.43 -2.80 16 20 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 21 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 22 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 23 H 0.20 1.35 8.06 -52.48 -0.42 0.93 16 24 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.34 5.10 8.72 -39.29 -0.34 4.76 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 33 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.15 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 294.77 15.07 4.44 4.44 Total: -1.00 -31.35 294.77 -7.24 -38.60 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -5.38 Total: -0.75 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -1.34 Total: -19.22 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: -0.01 Total: -37.72 kcal Atomic # 8 Polarization: -2.33 SS G_CDS: 0.06 Total: -2.27 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.35 -7.24 -38.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885969521.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.264 kcal (2) G-P(sol) polarization free energy of solvation -31.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds