Wall clock time and date at job start Sun Mar 29 2020 22:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86802 * 119.99588 * 2 1 4 4 H 1.48502 * 109.46883 * 240.00163 * 3 2 1 5 5 H 1.48496 * 109.47386 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46784 * 120.00813 * 3 2 1 7 7 C 1.40051 * 120.00129 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99821 * 179.97438 * 7 2 1 9 9 C 1.46369 * 120.00234 * 359.97438 * 7 2 1 10 10 O 1.21694 * 119.99857 * 359.97438 * 9 7 2 11 11 N 1.34778 * 120.00372 * 180.02562 * 9 7 2 12 12 C 1.47814 * 134.57826 * 5.02201 * 11 9 7 13 13 C 1.53947 * 86.15611 * 204.58245 * 12 11 9 14 14 C 1.47575 * 134.49294 * 185.07788 * 11 9 7 15 15 H 1.09000 * 113.77032 * 269.77392 * 14 11 9 16 16 C 1.52998 * 113.76905 * 41.06609 * 14 11 9 17 17 C 1.54269 * 110.03067 * 268.80343 * 16 14 11 18 18 C 1.54956 * 104.16287 * 217.13913 * 17 16 14 19 19 C 1.54888 * 102.77961 * 37.88966 * 18 17 16 20 20 C 1.53873 * 110.03079 * 151.59318 * 16 14 11 21 21 H 0.96995 * 120.00246 * 359.97438 * 1 2 3 22 22 H 1.09002 * 113.66554 * 90.27463 * 12 11 9 23 23 H 1.09001 * 113.93492 * 318.92206 * 12 11 9 24 24 H 1.09002 * 113.73875 * 222.14062 * 13 12 11 25 25 H 1.09003 * 113.74228 * 90.83278 * 13 12 11 26 26 H 1.08999 * 110.01759 * 30.19725 * 16 14 11 27 27 H 1.09000 * 110.48773 * 335.78900 * 17 16 14 28 28 H 1.09000 * 110.48403 * 98.42947 * 17 16 14 29 29 H 1.09008 * 110.72113 * 279.57722 * 18 17 16 30 30 H 1.08997 * 110.77063 * 156.22645 * 18 17 16 31 31 H 1.08999 * 110.48887 * 203.40680 * 19 18 17 32 32 H 1.08997 * 110.60050 * 80.81700 * 19 18 17 33 33 H 1.09009 * 110.03270 * 238.56778 * 20 16 14 34 34 H 1.08999 * 110.03651 * 359.94174 * 20 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0943 1.6965 -1.2126 5 1 1.2756 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2129 -0.0005 8 1 3.0871 -1.2128 -0.0010 9 6 1.2752 -2.4805 -0.0005 10 8 0.0583 -2.4805 0.0004 11 7 1.9491 -3.6477 -0.0005 12 6 3.3762 -4.0218 0.0916 13 6 2.9767 -5.3176 -0.6372 14 6 1.5582 -5.0677 -0.0937 15 1 1.3691 -5.5356 0.8724 16 6 0.4506 -5.3366 -1.1144 17 6 -0.9298 -5.2515 -0.4309 18 6 -1.7616 -6.3648 -1.1164 19 6 -0.7257 -7.5012 -1.3023 20 6 0.5803 -6.7662 -1.6686 21 1 -0.4850 0.8400 0.0004 22 1 3.7217 -4.1808 1.1131 23 1 4.0400 -3.3792 -0.4868 24 1 3.4502 -6.2123 -0.2328 25 1 3.0488 -5.2507 -1.7227 26 1 0.5095 -4.6138 -1.9281 27 1 -0.8391 -5.4465 0.6377 28 1 -1.3818 -4.2749 -0.6044 29 1 -2.1398 -6.0253 -2.0807 30 1 -2.5789 -6.6888 -0.4721 31 1 -1.0293 -8.1656 -2.1113 32 1 -0.6010 -8.0618 -0.3760 33 1 0.7014 -6.7373 -2.7515 34 1 1.4330 -7.2681 -1.2112 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889405107.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:04:27 Heat of formation + Delta-G solvation = -22.325934 kcal Electronic energy + Delta-G solvation = -15741.108590 eV Core-core repulsion = 13253.194215 eV Total energy + Delta-G solvation = -2487.914375 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.34458 -36.83309 -35.46450 -32.41831 -29.43359 -28.42461 -27.88316 -25.85674 -23.82335 -21.33775 -20.10932 -19.50353 -18.40352 -16.71111 -15.55143 -15.22907 -15.12697 -14.24425 -13.79081 -13.72901 -12.93593 -12.37798 -12.21695 -11.96926 -11.75555 -11.34453 -11.18906 -10.98572 -10.78796 -10.65446 -10.57337 -10.45015 -10.36055 -10.25809 -10.09643 -9.88109 -9.48588 -8.81908 -7.49494 -7.14755 -6.15139 -4.59852 3.16719 3.21317 3.23248 4.06306 4.38084 4.59638 4.98057 5.08807 5.11722 5.24458 5.48535 5.75875 5.85247 5.91190 5.91500 5.99137 6.01067 6.09731 6.12740 6.20434 6.20938 6.24869 6.32698 6.45202 6.56170 6.66106 6.87902 6.92195 7.06346 7.19409 7.46407 8.16327 8.53598 9.05586 9.68093 10.62679 10.83655 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.039554 B = 0.008039 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.731106 B = 3482.008756 C = 4043.455433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.088 3.912 3 Si 0.907 3.093 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.578 3.422 10 O -0.567 6.567 11 N -0.659 5.659 12 C 0.109 3.891 13 C -0.152 4.152 14 C 0.141 3.859 15 H 0.066 0.934 16 C -0.083 4.083 17 C -0.108 4.108 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.116 4.116 21 H 0.268 0.732 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.064 0.936 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.060 0.940 33 H 0.057 0.943 34 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.413 -10.841 -1.968 11.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.131 4.131 3 Si 0.732 3.268 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.193 1.193 7 C -0.576 4.576 8 H 0.083 0.917 9 C 0.385 3.615 10 O -0.449 6.449 11 N -0.401 5.401 12 C -0.016 4.016 13 C -0.190 4.190 14 C 0.037 3.963 15 H 0.084 0.916 16 C -0.102 4.102 17 C -0.145 4.145 18 C -0.165 4.165 19 C -0.160 4.160 20 C -0.154 4.154 21 H 0.079 0.921 22 H 0.078 0.922 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.101 0.899 26 H 0.092 0.908 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 2.431 -10.494 -1.964 10.950 hybrid contribution 0.624 0.869 0.118 1.076 sum 3.056 -9.625 -1.846 10.266 Atomic orbital electron populations 1.70003 1.06962 1.27288 1.35594 1.25694 0.94623 1.00139 0.92694 0.86450 0.79837 0.81137 0.79414 1.19320 1.20546 1.19336 1.20801 0.93487 0.89101 1.54228 0.91718 1.17980 0.86628 0.80876 0.75967 1.90582 1.13564 1.85602 1.55190 1.50453 1.06016 1.03880 1.79732 1.22675 0.86980 0.93565 0.98341 1.23638 0.96983 0.97495 1.00864 1.22509 0.92965 0.84549 0.96320 0.91609 1.21779 0.95021 0.95548 0.97850 1.22348 0.94420 0.99249 0.98505 1.22565 0.97452 0.96135 1.00394 1.22347 0.95716 0.97447 1.00523 1.22170 0.97448 0.95672 1.00151 0.92115 0.92243 0.91434 0.91732 0.89894 0.90840 0.92559 0.89853 0.92039 0.92343 0.92514 0.92101 0.92382 0.91883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.28 11.83 55.55 0.66 -22.62 16 2 C 0.09 2.49 5.50 -17.37 -0.10 2.40 16 3 Si 0.91 20.52 29.56 -169.99 -5.02 15.50 16 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 6 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.54 -15.64 9.34 -35.63 -0.33 -15.97 16 8 H 0.06 1.75 7.69 -52.48 -0.40 1.35 16 9 C 0.58 16.83 7.85 -12.99 -0.10 16.73 16 10 O -0.57 -18.17 13.49 5.19 0.07 -18.09 16 11 N -0.66 -15.47 3.50 -171.84 -0.60 -16.08 16 12 C 0.11 1.99 8.48 -2.84 -0.02 1.97 16 13 C -0.15 -2.35 6.71 -25.79 -0.17 -2.52 16 14 C 0.14 2.68 3.59 -66.87 -0.24 2.44 16 15 H 0.07 1.23 7.85 -51.93 -0.41 0.82 16 16 C -0.08 -1.52 2.52 -89.50 -0.23 -1.75 16 17 C -0.11 -2.07 5.66 -25.03 -0.14 -2.21 16 18 C -0.13 -1.93 6.91 -24.70 -0.17 -2.10 16 19 C -0.12 -1.60 6.83 -25.07 -0.17 -1.77 16 20 C -0.12 -1.64 6.11 -25.61 -0.16 -1.80 16 21 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 22 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 24 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 25 H 0.08 1.26 8.10 -51.93 -0.42 0.84 16 26 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 27 H 0.06 1.10 7.66 -51.93 -0.40 0.70 16 28 H 0.08 1.94 6.97 -51.93 -0.36 1.58 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 34 H 0.06 0.80 7.01 -51.93 -0.36 0.44 16 LS Contribution 276.04 15.07 4.16 4.16 Total: -1.00 -33.22 276.04 -7.87 -41.08 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -5.29 Total: 0.65 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -1.83 Total: -4.59 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.06 Total: -38.69 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: 0.07 Total: -18.09 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.22 -7.87 -41.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889405107.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.756 kcal (2) G-P(sol) polarization free energy of solvation -33.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds