Wall clock time and date at job start Sun Mar 29 2020 21:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36940 * 120.00016 * 2 1 4 4 H 1.08003 * 119.99915 * 202.59432 * 3 2 1 5 5 C 1.38807 * 120.00210 * 22.59394 * 3 2 1 6 6 N 1.31620 * 119.99803 * 13.08345 * 5 3 2 7 7 Si 1.86796 * 120.00339 * 193.08577 * 5 3 2 8 8 H 1.48502 * 109.47062 * 89.99798 * 7 5 3 9 9 H 1.48499 * 109.47553 * 210.00021 * 7 5 3 10 10 H 1.48505 * 109.47059 * 330.00008 * 7 5 3 11 11 C 1.46495 * 119.99955 * 180.02562 * 2 1 3 12 12 C 1.50700 * 109.47052 * 269.29241 * 11 2 1 13 13 C 1.38248 * 120.00074 * 2.21281 * 12 11 2 14 14 C 1.38212 * 120.00275 * 179.72577 * 13 12 11 15 15 C 1.38258 * 119.99740 * 0.27236 * 14 13 12 16 16 C 1.38219 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.38214 * 119.99775 * 182.40417 * 12 11 2 18 18 C 1.50701 * 120.00431 * 0.04314 * 17 12 11 19 19 F 1.39898 * 109.47090 * 84.64776 * 18 17 12 20 20 H 1.09001 * 109.46668 * 273.83469 * 1 2 3 21 21 H 1.09010 * 109.46928 * 33.82629 * 1 2 3 22 22 H 1.08994 * 109.47584 * 153.82849 * 1 2 3 23 23 H 0.97006 * 119.99748 * 179.97438 * 6 5 3 24 24 H 1.09006 * 109.47103 * 149.29219 * 11 2 1 25 25 H 1.08999 * 109.47389 * 29.29262 * 11 2 1 26 26 H 1.07999 * 120.00414 * 359.97438 * 13 12 11 27 27 H 1.08000 * 120.00665 * 180.25654 * 14 13 12 28 28 H 1.08008 * 119.99906 * 179.97438 * 15 14 13 29 29 H 1.07995 * 119.99924 * 179.97438 * 16 15 14 30 30 H 1.08996 * 109.47295 * 204.65067 * 18 17 12 31 31 H 1.09003 * 109.47108 * 324.65082 * 18 17 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1676 1.2218 -0.3594 5 6 1.5356 2.3419 0.4618 6 7 0.4057 2.2640 1.1323 7 14 2.3127 4.0082 0.1318 8 1 1.8010 4.5471 -1.1539 9 1 1.9669 4.9426 1.2329 10 1 3.7883 3.8595 0.0538 11 6 2.1975 -1.2687 -0.0006 12 6 2.4638 -1.6956 1.4200 13 6 1.9863 -0.9354 2.4713 14 6 2.2257 -1.3299 3.7741 15 6 2.9476 -2.4818 4.0259 16 6 3.4294 -3.2391 2.9749 17 6 3.1890 -2.8450 1.6717 18 6 3.7141 -3.6709 0.5257 19 9 4.9371 -3.1460 0.0946 20 1 -0.3633 0.0687 1.0254 21 1 -0.3633 0.8538 -0.5721 22 1 -0.3634 -0.9222 -0.4532 23 1 -0.0233 3.0719 1.4554 24 1 3.1444 -1.1413 -0.5253 25 1 1.6030 -2.0313 -0.5037 26 1 1.4227 -0.0353 2.2746 27 1 1.8491 -0.7383 4.5954 28 1 3.1350 -2.7899 5.0440 29 1 3.9937 -4.1387 3.1716 30 1 3.8562 -4.7002 0.8548 31 1 2.9988 -3.6478 -0.2965 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929489546.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:59 Heat of formation + Delta-G solvation = -4.627449 kcal Electronic energy + Delta-G solvation = -15274.792667 eV Core-core repulsion = 12664.185451 eV Total energy + Delta-G solvation = -2610.607216 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -47.30573 -38.83220 -35.53816 -32.27156 -31.39564 -29.85397 -26.48470 -25.83955 -25.33852 -22.13065 -20.84816 -19.93082 -16.74317 -16.31704 -15.75643 -15.59185 -15.03191 -14.54974 -14.04607 -13.58788 -13.44736 -13.12918 -12.94544 -12.19052 -11.83622 -11.48489 -11.24246 -10.99201 -10.85860 -10.71556 -10.48458 -10.26085 -10.16227 -9.99158 -9.84281 -8.56698 -8.30528 -7.97687 -6.82952 -5.75978 -3.22160 1.82948 2.05454 3.38828 3.45541 3.47061 4.34627 4.49507 4.93691 5.02777 5.16507 5.35783 5.45221 5.50732 5.62703 5.84605 5.92469 6.04763 6.27599 6.34435 6.49714 6.59730 6.73114 6.79072 6.93762 7.23461 7.35678 7.43932 7.69486 7.74234 7.83348 8.37124 9.21567 9.82567 10.31502 11.29178 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.029576 B = 0.009066 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.498952 B = 3087.805245 C = 3366.283826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.599 5.599 3 C -0.252 4.252 4 H 0.069 0.931 5 C 0.003 3.997 6 N -0.909 5.909 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.177 3.823 12 C -0.071 4.071 13 C -0.086 4.086 14 C -0.120 4.120 15 C -0.142 4.142 16 C -0.114 4.114 17 C -0.152 4.152 18 C 0.111 3.889 19 F -0.214 7.214 20 H 0.030 0.970 21 H 0.046 0.954 22 H -0.003 1.003 23 H 0.253 0.747 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.162 0.838 27 H 0.114 0.886 28 H 0.112 0.888 29 H 0.112 0.888 30 H 0.073 0.927 31 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.777 -10.322 1.872 10.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.321 5.321 3 C -0.381 4.381 4 H 0.087 0.913 5 C -0.195 4.195 6 N -0.554 5.554 7 Si 0.734 3.266 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.205 1.205 11 C 0.049 3.951 12 C -0.074 4.074 13 C -0.104 4.104 14 C -0.139 4.139 15 C -0.160 4.160 16 C -0.132 4.132 17 C -0.153 4.153 18 C 0.056 3.944 19 F -0.195 7.195 20 H 0.048 0.952 21 H 0.064 0.936 22 H 0.016 0.984 23 H 0.063 0.937 24 H 0.080 0.920 25 H 0.071 0.929 26 H 0.179 0.821 27 H 0.132 0.868 28 H 0.130 0.870 29 H 0.130 0.870 30 H 0.092 0.908 31 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.683 -10.154 1.900 10.673 hybrid contribution 0.457 0.989 0.145 1.099 sum 3.140 -9.165 2.045 9.901 Atomic orbital electron populations 1.20858 0.82321 0.95821 0.99395 1.43957 1.01931 1.00484 1.85705 1.19225 0.98138 0.85200 1.35582 0.91322 1.24972 0.97857 0.98436 0.98235 1.70031 1.19139 1.27245 1.39021 0.86249 0.78854 0.84078 0.77373 1.21521 1.21770 1.20486 1.19975 0.96391 0.88547 0.90152 1.21259 0.94191 0.92279 0.99702 1.21768 0.97524 1.00293 0.90786 1.21291 0.98768 0.96363 0.97435 1.20965 1.00506 0.96404 0.98120 1.20786 1.00511 0.99760 0.92188 1.20029 1.02786 0.98152 0.94348 1.20707 0.82100 0.95782 0.95823 1.92788 1.46559 1.88964 1.91202 0.95177 0.93552 0.98403 0.93667 0.91986 0.92869 0.82073 0.86799 0.87036 0.87041 0.90849 0.90138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.86 8.69 59.85 0.52 4.38 16 2 N -0.60 -14.76 1.73 -182.50 -0.32 -15.07 16 3 C -0.25 -6.82 9.09 -15.06 -0.14 -6.96 16 4 H 0.07 1.87 7.86 -52.48 -0.41 1.46 16 5 C 0.00 0.08 5.09 -17.43 -0.09 -0.01 16 6 N -0.91 -25.48 10.70 55.49 0.59 -24.89 16 7 Si 0.90 21.82 29.57 -169.99 -5.03 16.79 16 8 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 11 C 0.18 3.70 4.85 -5.20 -0.03 3.67 16 12 C -0.07 -1.44 5.88 -104.63 -0.61 -2.06 16 13 C -0.09 -1.86 9.16 -39.59 -0.36 -2.22 16 14 C -0.12 -2.23 10.05 -39.58 -0.40 -2.63 16 15 C -0.14 -2.29 10.05 -39.58 -0.40 -2.69 16 16 C -0.11 -1.81 9.68 -39.58 -0.38 -2.20 16 17 C -0.15 -2.63 5.60 -104.62 -0.59 -3.22 16 18 C 0.11 1.58 7.14 36.01 0.26 1.84 16 19 F -0.21 -3.61 17.34 2.25 0.04 -3.57 16 20 H 0.03 0.77 6.82 -51.93 -0.35 0.41 16 21 H 0.05 1.19 7.23 -51.92 -0.38 0.82 16 22 H 0.00 -0.05 7.84 -51.93 -0.41 -0.46 16 23 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 24 H 0.06 1.32 7.99 -51.93 -0.41 0.90 16 25 H 0.05 0.99 7.35 -51.93 -0.38 0.61 16 26 H 0.16 4.08 5.78 -52.49 -0.30 3.78 16 27 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16 28 H 0.11 1.47 8.06 -52.48 -0.42 1.05 16 29 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 30 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 31 H 0.08 1.04 6.92 -51.93 -0.36 0.69 16 LS Contribution 264.25 15.07 3.98 3.98 Total: -1.00 -28.83 264.25 -6.77 -35.61 By element: Atomic # 1 Polarization: 3.07 SS G_CDS: -3.83 Total: -0.76 kcal Atomic # 6 Polarization: -9.87 SS G_CDS: -2.22 Total: -12.09 kcal Atomic # 7 Polarization: -40.24 SS G_CDS: 0.28 Total: -39.96 kcal Atomic # 9 Polarization: -3.61 SS G_CDS: 0.04 Total: -3.57 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.83 -6.77 -35.61 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929489546.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.979 kcal (2) G-P(sol) polarization free energy of solvation -28.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.606 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds