Wall clock time and date at job start Sun Mar 29 2020 22:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50706 * 110.94234 * 2 1 4 4 O 1.21284 * 119.99664 * 123.98547 * 3 2 1 5 5 N 1.34767 * 119.99879 * 303.99184 * 3 2 1 6 6 C 1.46505 * 119.99786 * 179.97438 * 5 3 2 7 7 C 1.53008 * 109.46886 * 179.97438 * 6 5 3 8 8 C 1.50697 * 109.46969 * 179.97438 * 7 6 5 9 9 H 1.08004 * 119.99879 * 0.02562 * 8 7 6 10 10 C 1.37879 * 120.00047 * 180.02562 * 8 7 6 11 11 N 1.31509 * 119.99777 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99784 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47200 * 359.97438 * 12 10 8 14 14 H 1.48501 * 109.46866 * 120.00146 * 12 10 8 15 15 H 1.48496 * 109.46761 * 239.99630 * 12 10 8 16 16 C 1.54637 * 111.03861 * 123.98717 * 2 1 3 17 17 C 1.51104 * 104.82203 * 142.72598 * 16 2 1 18 18 C 1.30525 * 111.10650 * 343.50481 * 17 16 2 19 19 C 1.51094 * 111.10287 * 0.02562 * 18 17 16 20 20 H 1.08995 * 109.47261 * 296.00512 * 1 2 3 21 21 H 1.08996 * 109.47124 * 56.01331 * 1 2 3 22 22 H 1.09008 * 109.46829 * 176.00893 * 1 2 3 23 23 H 0.97005 * 120.00111 * 359.97438 * 5 3 2 24 24 H 1.09001 * 109.47103 * 299.99408 * 6 5 3 25 25 H 1.08992 * 109.47209 * 59.99931 * 6 5 3 26 26 H 1.09001 * 109.47029 * 299.99776 * 7 6 5 27 27 H 1.08999 * 109.47298 * 60.00314 * 7 6 5 28 28 H 0.97004 * 119.99979 * 180.02562 * 11 10 8 29 29 H 1.09002 * 110.38719 * 23.85677 * 16 2 1 30 30 H 1.09000 * 110.38599 * 261.59097 * 16 2 1 31 31 H 1.08001 * 124.43953 * 163.48841 * 17 16 2 32 32 H 1.07999 * 124.44678 * 179.97438 * 18 17 16 33 33 H 1.08999 * 110.38926 * 135.24917 * 19 18 17 34 34 H 1.09008 * 110.38956 * 257.50891 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0687 1.4075 0.0000 4 8 2.8337 1.7639 0.8710 5 7 1.7001 2.2700 -0.9677 6 6 2.2233 3.6385 -0.9674 7 6 1.6530 4.4028 -2.1639 8 6 2.1906 5.8106 -2.1632 9 1 2.8714 6.1282 -1.3872 10 6 1.8135 6.6931 -3.1531 11 7 0.9849 6.3061 -4.0982 12 14 2.4806 8.4380 -3.1526 13 1 3.3877 8.6207 -1.9912 14 1 3.2311 8.6813 -4.4107 15 1 1.3528 9.3990 -3.0553 16 6 2.0851 -0.8068 1.1967 17 6 3.3088 -1.5088 0.6553 18 6 3.3106 -1.5106 -0.6499 19 6 2.0888 -0.8097 -1.1967 20 1 -0.3633 0.4506 0.9236 21 1 -0.3633 0.5744 -0.8521 22 1 -0.3633 -1.0253 -0.0715 23 1 1.0884 1.9848 -1.6644 24 1 1.9318 4.1387 -0.0438 25 1 3.3106 3.6117 -1.0386 26 1 1.9448 3.9025 -3.0872 27 1 0.5656 4.4296 -2.0931 28 1 0.7199 6.9269 -4.7949 29 1 1.3493 -1.5351 1.5377 30 1 2.3609 -0.1369 2.0111 31 1 4.0807 -1.9506 1.2681 32 1 4.0843 -1.9542 -1.2591 33 1 2.3674 -0.1408 -2.0109 34 1 1.3545 -1.5387 -1.5396 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935339073.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:26 Heat of formation + Delta-G solvation = -60.604683 kcal Electronic energy + Delta-G solvation = -15089.080004 eV Core-core repulsion = 12599.505738 eV Total energy + Delta-G solvation = -2489.574266 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52085 -38.65451 -36.58370 -34.87520 -32.94328 -31.24532 -29.09571 -26.97986 -26.38082 -23.82421 -22.62139 -20.33437 -19.78463 -18.52721 -17.94620 -16.93597 -16.53380 -16.48271 -16.14072 -15.29642 -14.85715 -14.36278 -13.96542 -13.75323 -13.60541 -13.22392 -13.14343 -13.05170 -12.95042 -12.53475 -12.30953 -12.15047 -12.06656 -11.71333 -11.57296 -11.44711 -10.73028 -10.62084 -10.04524 -9.77045 -8.25446 -6.35970 1.38844 1.40212 1.41230 1.54380 1.65192 2.24377 2.44759 3.09342 3.45562 3.64649 3.78839 4.10482 4.34676 4.44153 4.47759 4.51135 4.71191 4.78605 4.82200 4.83908 4.94673 4.99649 5.06528 5.14645 5.27450 5.30952 5.48465 5.56058 5.64059 5.77388 5.99925 6.14961 6.62812 6.77092 7.28003 7.33542 8.86645 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.053250 B = 0.005232 C = 0.005128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.692009 B = 5350.293522 C = 5458.794377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C 0.517 3.483 4 O -0.589 6.589 5 N -0.715 5.715 6 C 0.141 3.859 7 C 0.024 3.976 8 C -0.548 4.548 9 H 0.057 0.943 10 C 0.009 3.991 11 N -0.926 5.926 12 Si 0.965 3.035 13 H -0.267 1.267 14 H -0.276 1.276 15 H -0.276 1.276 16 C -0.085 4.085 17 C -0.169 4.169 18 C -0.182 4.182 19 C -0.086 4.086 20 H 0.058 0.942 21 H 0.066 0.934 22 H 0.097 0.903 23 H 0.409 0.591 24 H 0.044 0.956 25 H 0.042 0.958 26 H 0.009 0.991 27 H 0.010 0.990 28 H 0.266 0.734 29 H 0.107 0.893 30 H 0.062 0.938 31 H 0.135 0.865 32 H 0.138 0.862 33 H 0.066 0.934 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.261 -16.252 5.399 17.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.090 4.090 3 C 0.305 3.695 4 O -0.470 6.470 5 N -0.366 5.366 6 C 0.017 3.983 7 C -0.014 4.014 8 C -0.586 4.586 9 H 0.075 0.925 10 C -0.190 4.190 11 N -0.565 5.565 12 Si 0.789 3.211 13 H -0.191 1.191 14 H -0.201 1.201 15 H -0.201 1.201 16 C -0.122 4.122 17 C -0.186 4.186 18 C -0.200 4.200 19 C -0.123 4.123 20 H 0.077 0.923 21 H 0.085 0.915 22 H 0.116 0.884 23 H 0.245 0.755 24 H 0.063 0.937 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.075 0.925 29 H 0.125 0.875 30 H 0.080 0.920 31 H 0.152 0.848 32 H 0.156 0.844 33 H 0.085 0.915 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.819 -15.913 5.854 16.976 hybrid contribution 0.212 1.097 -0.470 1.212 sum -0.607 -14.816 5.384 15.776 Atomic orbital electron populations 1.21816 0.89728 1.04632 1.02826 1.21740 0.98463 0.89686 0.99087 1.21065 0.80074 0.88011 0.80357 1.90620 1.37779 1.79637 1.38948 1.46127 1.48763 1.12345 1.29320 1.21210 0.97172 0.80818 0.99121 1.19128 0.95752 0.94259 0.92230 1.21485 1.28397 0.97461 1.11246 0.92516 1.25853 0.95110 1.03236 0.94811 1.70058 1.34712 1.37282 1.14479 0.85397 0.78384 0.78982 0.78290 1.19113 1.20126 1.20100 1.21386 0.96421 0.97752 0.96636 1.23415 0.98576 1.00000 0.96646 1.23437 0.98908 1.01155 0.96475 1.21555 0.96787 0.98248 0.95730 0.92299 0.91460 0.88390 0.75478 0.93742 0.93971 0.97293 0.97183 0.92482 0.87479 0.91956 0.84757 0.84418 0.91539 0.86674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.45 8.43 71.98 0.61 -1.84 16 2 C -0.09 -2.11 0.85 -51.71 -0.04 -2.15 16 3 C 0.52 18.09 6.52 87.66 0.57 18.66 16 4 O -0.59 -25.60 15.53 -3.04 -0.05 -25.65 16 5 N -0.72 -25.67 5.39 -463.05 -2.50 -28.17 16 6 C 0.14 6.25 5.61 86.38 0.48 6.73 16 7 C 0.02 1.21 5.09 29.85 0.15 1.36 16 8 C -0.55 -30.96 9.11 25.60 0.23 -30.72 16 9 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 10 C 0.01 0.49 5.46 84.66 0.46 0.96 16 11 N -0.93 -54.30 13.29 21.45 0.28 -54.01 16 12 Si 0.96 43.82 29.54 68.60 2.03 45.85 16 13 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 14 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 15 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 16 C -0.08 -1.97 5.71 30.53 0.17 -1.79 16 17 C -0.17 -3.76 10.78 26.26 0.28 -3.47 16 18 C -0.18 -3.89 10.78 26.26 0.28 -3.61 16 19 C -0.09 -1.79 5.93 30.63 0.18 -1.61 16 20 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 21 H 0.07 1.22 7.37 -2.39 -0.02 1.20 16 22 H 0.10 1.23 8.06 -2.38 -0.02 1.22 16 23 H 0.41 12.60 7.70 -92.70 -0.71 11.88 16 24 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 25 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 26 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 29 H 0.11 1.84 7.89 -2.39 -0.02 1.83 16 30 H 0.06 1.78 7.01 -2.39 -0.02 1.76 16 31 H 0.13 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.14 2.49 8.06 -2.91 -0.02 2.47 16 33 H 0.07 1.52 7.86 -2.39 -0.02 1.51 16 34 H 0.12 1.71 7.84 -2.38 -0.02 1.70 16 Total: -1.00 -67.78 285.94 3.52 -64.26 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.36 Total: 15.21 kcal Atomic # 6 Polarization: -20.88 SS G_CDS: 3.39 Total: -17.49 kcal Atomic # 7 Polarization: -79.97 SS G_CDS: -2.21 Total: -82.18 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.05 Total: -25.65 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -67.78 3.52 -64.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935339073.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.654 kcal (2) G-P(sol) polarization free energy of solvation -67.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds