Wall clock time and date at job start Sun Mar 29 2020 22:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86804 * 119.99789 * 2 1 4 4 H 1.48501 * 109.47090 * 239.99974 * 3 2 1 5 5 H 1.48493 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.46962 * 120.00100 * 3 2 1 7 7 C 1.37867 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00458 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00210 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47377 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47377 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99612 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00104 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00107 * 180.02562 * 13 11 10 15 15 H 1.09008 * 109.24581 * 34.65180 * 14 13 11 16 16 C 1.50070 * 109.35553 * 274.99865 * 14 13 11 17 17 C 1.29452 * 124.07339 * 222.39919 * 16 14 13 18 18 C 1.50060 * 124.07388 * 0.72572 * 17 16 14 19 19 C 1.53020 * 110.15249 * 342.87128 * 18 17 16 20 20 C 1.53175 * 109.26253 * 154.47449 * 14 13 11 21 21 H 0.96999 * 119.99897 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47111 * 60.00149 * 9 7 2 23 23 H 1.09004 * 109.47267 * 299.99948 * 9 7 2 24 24 H 1.09002 * 109.47154 * 59.99838 * 10 9 7 25 25 H 1.09004 * 109.47290 * 299.99716 * 10 9 7 26 26 H 0.96997 * 120.00144 * 359.97438 * 13 11 10 27 27 H 1.08002 * 117.96604 * 42.68557 * 16 14 13 28 28 H 1.07995 * 117.95978 * 180.75090 * 17 16 14 29 29 H 1.09006 * 109.35518 * 103.07868 * 18 17 16 30 30 H 1.09005 * 109.36140 * 222.79823 * 18 17 16 31 31 H 1.09004 * 109.64792 * 169.11546 * 19 18 17 32 32 H 1.08995 * 109.64257 * 289.75284 * 19 18 17 33 33 H 1.09002 * 109.83997 * 50.15247 * 20 14 13 34 34 H 1.09003 * 109.75816 * 289.54001 * 20 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9671 0.0001 12 8 0.2791 -4.9671 0.0010 13 7 2.1658 -6.1343 0.0007 14 6 1.4334 -7.4031 0.0008 15 1 0.5208 -7.2911 -0.5848 16 6 1.0773 -7.7717 1.4112 17 6 1.1754 -8.9685 1.8949 18 6 1.6736 -10.1513 1.1173 19 6 1.6363 -9.8499 -0.3825 20 6 2.3111 -8.4932 -0.6216 21 1 -0.4850 0.8400 -0.0004 22 1 0.6242 -2.5567 -0.8903 23 1 0.6248 -2.5571 0.8897 24 1 2.8721 -3.6042 0.8894 25 1 2.8720 -3.6043 -0.8906 26 1 3.1358 -6.1343 0.0004 27 1 0.7123 -6.9909 2.0620 28 1 0.8799 -9.1255 2.9217 29 1 2.6981 -10.3742 1.4156 30 1 1.0406 -11.0138 1.3263 31 1 2.1735 -10.6272 -0.9260 32 1 0.6015 -9.8093 -0.7224 33 1 3.2961 -8.4866 -0.1547 34 1 2.4123 -8.3180 -1.6927 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117691955.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:15 Heat of formation + Delta-G solvation = -47.782878 kcal Electronic energy + Delta-G solvation = -14799.332801 eV Core-core repulsion = 12310.314530 eV Total energy + Delta-G solvation = -2489.018271 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.65340 -37.89219 -33.88974 -33.41190 -31.15865 -31.05312 -29.14334 -25.66046 -23.17223 -22.47844 -21.32810 -19.54667 -18.05497 -16.90507 -16.53636 -15.61728 -15.34694 -14.78916 -14.41805 -14.02183 -13.49247 -13.12328 -12.90363 -12.71421 -12.44613 -12.14240 -12.07081 -11.33815 -11.12494 -10.89871 -10.81204 -10.58962 -10.46836 -9.92322 -9.63768 -9.23592 -9.10579 -8.91000 -8.75310 -8.29550 -5.93817 -3.98327 2.20792 3.29601 3.35926 3.40383 3.42090 3.67168 4.49302 4.57452 4.61757 4.81820 5.05176 5.23337 5.32947 5.40420 5.40901 5.48596 5.60147 5.69012 5.76526 5.89805 6.10970 6.16758 6.26698 6.28105 6.55785 6.72256 6.92355 6.96701 7.76400 7.89180 7.94895 8.09835 8.41298 8.83222 9.10316 9.65074 11.17123 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.075258 B = 0.004583 C = 0.004513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 371.965951 B = 6108.663135 C = 6203.093044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.535 6.535 13 N -0.738 5.738 14 C 0.173 3.827 15 H 0.094 0.906 16 C -0.151 4.151 17 C -0.161 4.161 18 C -0.090 4.090 19 C -0.118 4.118 20 C -0.125 4.125 21 H 0.261 0.739 22 H 0.023 0.977 23 H 0.023 0.977 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.397 0.603 27 H 0.106 0.894 28 H 0.102 0.898 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.479 -19.219 0.555 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.566 4.566 8 H 0.073 0.927 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.410 6.410 13 N -0.391 5.391 14 C 0.068 3.932 15 H 0.112 0.888 16 C -0.170 4.170 17 C -0.179 4.179 18 C -0.127 4.127 19 C -0.156 4.156 20 C -0.163 4.163 21 H 0.071 0.929 22 H 0.042 0.958 23 H 0.041 0.959 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.231 0.769 27 H 0.124 0.876 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.411 -19.063 0.549 19.823 hybrid contribution 0.874 0.967 0.178 1.316 sum 6.285 -18.096 0.726 19.170 Atomic orbital electron populations 1.69994 1.06056 1.26670 1.50163 1.25023 0.94821 0.99201 0.95311 0.86650 0.79540 0.83188 0.78532 1.20255 1.21287 1.20260 1.21195 0.92893 0.91060 1.51452 0.92669 1.18893 0.93185 0.89376 0.98598 1.21868 1.00710 0.91997 1.02444 1.21592 0.88703 0.85726 0.74202 1.90666 1.14471 1.87614 1.48224 1.46286 1.09895 1.05174 1.77765 1.19710 0.96260 0.83435 0.93800 0.88802 1.22552 0.99662 0.97252 0.97575 1.22011 1.01696 0.94461 0.99779 1.20460 1.01129 0.96666 0.94469 1.21588 1.01389 0.96507 0.96091 1.21881 0.99012 0.94271 1.01133 0.92908 0.95826 0.95866 0.90297 0.90265 0.76927 0.87609 0.87994 0.91001 0.91187 0.91326 0.91387 0.91210 0.90994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.74 13.29 55.43 0.74 -27.00 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.84 29.54 -169.99 -5.02 16.82 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 7 C -0.53 -15.16 9.11 -34.44 -0.31 -15.47 16 8 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.04 1.01 4.26 -27.88 -0.12 0.89 16 10 C -0.13 -2.69 5.64 -27.88 -0.16 -2.85 16 11 C 0.51 10.01 7.78 -10.99 -0.09 9.92 16 12 O -0.53 -12.85 15.63 5.56 0.09 -12.77 16 13 N -0.74 -10.71 5.05 -55.14 -0.28 -10.99 16 14 C 0.17 2.29 2.71 -69.30 -0.19 2.10 16 15 H 0.09 1.46 7.55 -51.92 -0.39 1.06 16 16 C -0.15 -2.01 9.33 -35.90 -0.33 -2.34 16 17 C -0.16 -1.73 9.80 -35.91 -0.35 -2.09 16 18 C -0.09 -0.76 6.11 -28.18 -0.17 -0.93 16 19 C -0.12 -0.99 6.01 -26.51 -0.16 -1.15 16 20 C -0.12 -1.20 5.48 -26.43 -0.14 -1.35 16 21 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 22 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 23 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 24 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 25 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 26 H 0.40 4.55 8.59 -40.82 -0.35 4.20 16 27 H 0.11 1.64 8.06 -52.49 -0.42 1.21 16 28 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.61 8.12 -51.93 -0.42 0.18 16 33 H 0.07 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 286.13 15.07 4.31 4.31 Total: -1.00 -33.61 286.13 -7.64 -41.25 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -5.35 Total: 0.02 kcal Atomic # 6 Polarization: -9.52 SS G_CDS: -2.12 Total: -11.65 kcal Atomic # 7 Polarization: -38.45 SS G_CDS: 0.46 Total: -37.99 kcal Atomic # 8 Polarization: -12.85 SS G_CDS: 0.09 Total: -12.77 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -33.61 -7.64 -41.25 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117691955.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.535 kcal (2) G-P(sol) polarization free energy of solvation -33.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds