Wall clock time and date at job start Sun Mar 29 2020 22:15:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99602 * 2 1 4 4 H 1.48504 * 109.46965 * 239.99509 * 3 2 1 5 5 H 1.48496 * 109.47179 * 359.97438 * 3 2 1 6 6 H 1.48504 * 109.46844 * 120.00137 * 3 2 1 7 7 C 1.37873 * 119.99944 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00231 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.46994 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.46994 * 179.97438 * 10 9 7 12 12 O 1.21273 * 119.99755 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99872 * 179.97438 * 11 10 9 14 14 C 1.47062 * 136.05920 * 0.05002 * 13 11 10 15 15 C 1.53494 * 87.98867 * 207.08825 * 14 13 11 16 16 C 1.47070 * 136.05415 * 180.02562 * 13 11 10 17 17 H 1.09006 * 113.46403 * 267.74872 * 16 13 11 18 18 C 1.52989 * 113.46982 * 38.13330 * 16 13 11 19 19 C 1.53000 * 117.50008 * 248.62173 * 18 16 13 20 20 C 1.52997 * 60.00347 * 252.51154 * 19 18 16 21 21 H 0.97001 * 120.00186 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.46458 * 60.00609 * 9 7 2 23 23 H 1.08995 * 109.47075 * 300.00370 * 9 7 2 24 24 H 1.09003 * 109.47121 * 60.00135 * 10 9 7 25 25 H 1.08997 * 109.47107 * 300.00480 * 10 9 7 26 26 H 1.09004 * 113.46960 * 321.86724 * 14 13 11 27 27 H 1.09004 * 113.46938 * 92.24577 * 14 13 11 28 28 H 1.09004 * 114.20601 * 220.35202 * 15 14 13 29 29 H 1.08997 * 114.20583 * 87.52002 * 15 14 13 30 30 H 1.09004 * 115.56709 * 34.30906 * 18 16 13 31 31 H 1.09002 * 117.49696 * 0.02562 * 19 18 16 32 32 H 1.09002 * 117.50343 * 145.02258 * 19 18 16 33 33 H 1.08999 * 117.49685 * 252.51237 * 20 19 18 34 34 H 1.08997 * 117.50044 * 107.48590 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4919 -4.9672 0.0001 12 8 0.2792 -4.9672 0.0000 13 7 2.1658 -6.1343 -0.0003 14 6 3.5791 -6.5411 -0.0004 15 6 3.1496 -7.8384 -0.6994 16 6 1.8115 -7.5617 -0.0004 17 1 1.7453 -7.9926 0.9987 18 6 0.5930 -7.8869 -0.8666 19 6 -0.6855 -8.3270 -0.1507 20 6 0.1432 -9.3479 -0.9330 21 1 -0.4850 0.8400 0.0004 22 1 0.6242 -2.5567 -0.8904 23 1 0.6247 -2.5571 0.8896 24 1 2.8720 -3.6043 0.8895 25 1 2.8720 -3.6042 -0.8904 26 1 4.2138 -5.9051 -0.6176 27 1 3.9854 -6.6992 0.9986 28 1 3.6646 -8.7302 -0.3421 29 1 3.1087 -7.7679 -1.7864 30 1 0.4829 -7.2849 -1.7686 31 1 -0.6587 -8.3844 0.9375 32 1 -1.6367 -8.0146 -0.5816 33 1 -0.2628 -9.7069 -1.8787 34 1 0.7153 -10.0772 -0.3596 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001158919022.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:42 Heat of formation + Delta-G solvation = -8.089389 kcal Electronic energy + Delta-G solvation = -15028.755580 eV Core-core repulsion = 12541.458548 eV Total energy + Delta-G solvation = -2487.297032 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.45752 -39.13042 -37.24764 -35.58373 -33.09374 -30.73356 -27.77166 -27.13057 -24.09603 -23.18400 -22.48372 -21.76814 -19.80196 -18.79216 -17.69446 -16.97825 -16.70483 -16.48351 -15.92191 -15.61103 -14.56262 -14.35409 -14.15537 -14.03880 -13.59615 -13.16559 -13.03651 -12.79147 -12.52866 -12.43772 -12.26943 -11.96910 -11.91411 -11.66588 -11.35238 -11.34015 -10.85481 -10.58689 -10.48955 -9.63243 -8.20028 -6.35252 1.40368 1.45708 1.53574 1.71040 1.90341 2.41615 2.92316 3.12467 3.49452 3.69505 3.79975 4.01991 4.07785 4.12341 4.33909 4.40165 4.49507 4.55609 4.65803 4.69522 4.75469 4.92269 4.99278 5.02395 5.10745 5.23009 5.24455 5.43795 5.46680 5.57837 5.81028 6.14197 6.77421 6.85995 7.29364 7.35652 8.92728 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.049061 B = 0.005549 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.579086 B = 5045.158958 C = 5511.949957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.007 4.007 3 Si 0.978 3.022 4 H -0.261 1.261 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.075 0.925 9 C 0.045 3.955 10 C -0.109 4.109 11 C 0.531 3.469 12 O -0.586 6.586 13 N -0.657 5.657 14 C 0.092 3.908 15 C -0.121 4.121 16 C 0.149 3.851 17 H 0.100 0.900 18 C -0.171 4.171 19 C -0.194 4.194 20 C -0.133 4.133 21 H 0.264 0.736 22 H -0.020 1.020 23 H -0.020 1.020 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.107 0.893 28 H 0.128 0.872 29 H 0.093 0.907 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.104 0.896 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -19.563 -0.774 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.204 4.204 3 Si 0.801 3.199 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.186 1.186 7 C -0.583 4.583 8 H 0.094 0.906 9 C 0.007 3.993 10 C -0.149 4.149 11 C 0.323 3.677 12 O -0.466 6.466 13 N -0.393 5.393 14 C -0.029 4.029 15 C -0.159 4.159 16 C 0.047 3.953 17 H 0.118 0.882 18 C -0.190 4.190 19 C -0.231 4.231 20 C -0.170 4.170 21 H 0.072 0.928 22 H -0.002 1.002 23 H -0.002 1.002 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.107 0.893 27 H 0.125 0.875 28 H 0.146 0.854 29 H 0.112 0.888 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.123 0.877 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 9.337 -19.240 -0.770 21.400 hybrid contribution -0.601 1.338 0.055 1.468 sum 8.736 -17.902 -0.715 19.933 Atomic orbital electron populations 1.70184 1.08431 1.27974 1.51275 1.26179 0.95738 1.04077 0.94415 0.85324 0.78031 0.77030 0.79551 1.18592 1.21166 1.18566 1.21662 0.93941 0.91537 1.51208 0.90650 1.18670 0.93619 0.92523 0.94471 1.21534 0.99168 0.90107 1.04073 1.20932 0.87216 0.85190 0.74411 1.90643 1.16424 1.87645 1.51917 1.50136 1.11307 1.04731 1.73154 1.23299 0.82141 0.94991 1.02457 1.23394 0.93146 0.98502 1.00844 1.22545 0.94745 0.79401 0.98639 0.88196 1.22304 0.96187 0.99554 1.00955 1.22894 0.95281 1.05544 0.99350 1.23005 1.01485 0.90206 1.02315 0.92779 1.00177 1.00168 0.88462 0.88523 0.89318 0.87493 0.85380 0.88833 0.90820 0.89050 0.90607 0.87715 0.85891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.13 13.29 21.45 0.28 -60.84 16 2 C -0.01 -0.40 5.46 84.65 0.46 0.06 16 3 Si 0.98 45.11 29.54 68.60 2.03 47.13 16 4 H -0.26 -11.35 7.11 99.48 0.71 -10.64 16 5 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.55 -32.19 9.11 25.60 0.23 -31.96 16 8 H 0.08 4.04 7.74 -2.91 -0.02 4.01 16 9 C 0.04 2.64 4.26 29.85 0.13 2.76 16 10 C -0.11 -4.80 5.47 29.85 0.16 -4.63 16 11 C 0.53 22.91 7.98 87.66 0.70 23.61 16 12 O -0.59 -31.36 16.19 -3.01 -0.05 -31.41 16 13 N -0.66 -20.06 3.57 -833.72 -2.97 -23.03 16 14 C 0.09 1.66 8.41 83.18 0.70 2.36 16 15 C -0.12 -1.70 8.03 30.92 0.25 -1.45 16 16 C 0.15 3.43 4.13 41.79 0.17 3.60 16 17 H 0.10 2.03 8.12 -2.38 -0.02 2.01 16 18 C -0.17 -4.50 5.02 -10.80 -0.05 -4.55 16 19 C -0.19 -5.08 10.24 30.59 0.31 -4.77 16 20 C -0.13 -2.38 10.25 30.60 0.31 -2.07 16 21 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 22 H -0.02 -1.34 8.10 -2.39 -0.02 -1.36 16 23 H -0.02 -1.33 8.10 -2.39 -0.02 -1.35 16 24 H 0.10 3.82 8.14 -2.39 -0.02 3.80 16 25 H 0.10 3.81 8.14 -2.39 -0.02 3.79 16 26 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.11 1.44 8.14 -2.38 -0.02 1.42 16 28 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.09 1.39 8.12 -2.39 -0.02 1.37 16 30 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 31 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 33 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -81.28 292.18 3.72 -77.56 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: 1.06 Total: 7.61 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 3.38 Total: -17.02 kcal Atomic # 7 Polarization: -81.19 SS G_CDS: -2.69 Total: -83.88 kcal Atomic # 8 Polarization: -31.36 SS G_CDS: -0.05 Total: -31.41 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -81.28 3.72 -77.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001158919022.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.470 kcal (2) G-P(sol) polarization free energy of solvation -81.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds