Wall clock time and date at job start Sun Mar 29 2020 21:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42895 * 109.47036 * 239.99739 * 2 1 3 5 5 C 1.35518 * 116.99976 * 210.00137 * 4 2 1 6 6 N 1.32311 * 119.08982 * 359.73120 * 5 4 2 7 7 C 1.32232 * 120.85553 * 179.71545 * 6 5 4 8 8 C 1.39391 * 119.05913 * 0.54755 * 7 6 5 9 9 N 1.39502 * 120.82762 * 179.70798 * 8 7 6 10 10 C 1.36808 * 119.99659 * 0.02562 * 9 8 7 11 11 H 1.08000 * 120.00708 * 359.97438 * 10 9 8 12 12 C 1.38776 * 119.99696 * 179.97438 * 10 9 8 13 13 N 1.31608 * 120.00477 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 119.99838 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47228 * 59.99981 * 14 12 10 16 16 H 1.48500 * 109.46953 * 180.02562 * 14 12 10 17 17 H 1.48508 * 109.47041 * 299.99773 * 14 12 10 18 18 C 1.39396 * 118.34483 * 359.73251 * 8 7 6 19 19 N 1.32228 * 119.06411 * 0.02562 * 18 8 7 20 20 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 21 21 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 23 23 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 24 24 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 25 25 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 26 26 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 27 27 H 1.08001 * 120.46738 * 180.25770 * 7 6 5 28 28 H 0.96998 * 120.00077 * 180.02562 * 9 8 7 29 29 H 0.96995 * 120.00570 * 180.02562 * 13 12 10 30 30 H 1.08008 * 120.46842 * 179.97438 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 3.1973 -1.3123 -1.0653 6 7 3.8504 -1.2768 0.0849 7 6 5.0124 -1.8924 0.2243 8 6 5.5519 -2.5749 -0.8648 9 7 6.7781 -3.2319 -0.7605 10 6 7.4665 -3.2119 0.4216 11 1 7.0609 -2.6871 1.2740 12 6 8.6860 -3.8659 0.5255 13 7 9.1807 -4.5050 -0.5133 14 14 9.6256 -3.8392 2.1398 15 1 8.7959 -4.4559 3.2057 16 1 10.8890 -4.6051 1.9898 17 1 9.9393 -2.4348 2.5068 18 6 4.8360 -2.5841 -2.0608 19 7 3.6777 -1.9490 -2.1210 20 1 -0.3633 0.5139 -0.8900 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 1.8934 -0.5138 0.8900 24 1 3.1301 1.4425 0.0005 25 1 1.6767 1.9563 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 5.5381 -1.8627 1.1672 28 1 7.1426 -3.7029 -1.5261 29 1 10.0329 -4.9624 -0.4406 30 1 5.2222 -3.1020 -2.9263 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187588.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:08 Heat of formation + Delta-G solvation = -8.783783 kcal Electronic energy + Delta-G solvation = -14741.607406 eV Core-core repulsion = 12150.739919 eV Total energy + Delta-G solvation = -2590.867486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.75141 -39.47671 -37.31827 -34.41617 -34.18666 -33.53045 -29.84809 -28.11072 -26.86158 -25.46053 -23.75334 -22.18549 -20.17751 -19.45530 -18.21254 -17.70394 -16.77929 -16.29367 -16.09896 -15.53363 -15.27630 -14.90162 -14.22127 -14.14512 -13.54122 -13.49350 -13.13630 -13.09547 -12.79569 -12.59802 -12.35729 -12.29211 -12.01851 -11.78693 -11.58197 -11.43189 -10.65582 -9.87541 -8.63977 -8.54878 -5.75053 0.35305 0.53673 1.46210 1.52474 1.55570 1.99215 2.25830 2.88069 3.25752 3.30258 3.49940 3.96332 3.98449 4.09582 4.13008 4.32940 4.39961 4.74512 4.86904 4.89077 4.95014 5.08986 5.23251 5.29368 5.32818 5.45093 5.72500 6.15208 6.59256 6.72467 7.30008 7.43468 7.53379 8.61229 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.049187 B = 0.006019 C = 0.005523 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.114286 B = 4650.434000 C = 5068.908215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 C -0.160 4.160 4 O -0.314 6.314 5 C 0.346 3.654 6 N -0.513 5.513 7 C 0.054 3.946 8 C 0.077 3.923 9 N -0.548 5.548 10 C -0.322 4.322 11 H 0.111 0.889 12 C -0.019 4.019 13 N -0.917 5.917 14 Si 0.998 3.002 15 H -0.265 1.265 16 H -0.282 1.282 17 H -0.265 1.265 18 C 0.054 3.946 19 N -0.493 5.493 20 H 0.067 0.933 21 H 0.056 0.944 22 H 0.103 0.897 23 H 0.073 0.927 24 H 0.036 0.964 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.168 0.832 28 H 0.400 0.600 29 H 0.279 0.721 30 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.329 5.982 3.323 10.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.022 3.978 3 C -0.218 4.218 4 O -0.219 6.219 5 C 0.042 3.958 6 N -0.239 5.239 7 C -0.120 4.120 8 C -0.047 4.047 9 N -0.153 5.153 10 C -0.451 4.451 11 H 0.128 0.872 12 C -0.220 4.220 13 N -0.555 5.555 14 Si 0.821 3.179 15 H -0.190 1.190 16 H -0.207 1.207 17 H -0.190 1.190 18 C -0.121 4.121 19 N -0.215 5.215 20 H 0.086 0.914 21 H 0.075 0.925 22 H 0.121 0.879 23 H 0.091 0.909 24 H 0.055 0.945 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.185 0.815 28 H 0.235 0.765 29 H 0.088 0.912 30 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -9.071 6.370 3.202 11.538 hybrid contribution 1.787 -0.841 0.318 2.001 sum -7.284 5.528 3.520 9.799 Atomic orbital electron populations 1.21885 0.90705 1.02998 1.04141 1.22526 0.95812 0.92680 0.86820 1.22164 1.00639 0.95414 1.03538 1.85970 1.30599 1.65793 1.39573 1.20095 0.89981 0.99004 0.86684 1.67552 1.09532 1.21489 1.25278 1.22302 0.92124 0.98584 0.99004 1.19567 0.89860 0.98337 0.96952 1.40782 1.14569 1.46432 1.13479 1.20010 1.02006 1.32151 0.90971 0.87167 1.26162 0.97788 0.95687 1.02329 1.69759 1.20701 1.33229 1.31775 0.84879 0.77212 0.78863 0.76939 1.18957 1.20723 1.18984 1.22422 0.90553 1.02098 0.97068 1.67079 1.13962 1.10129 1.30337 0.91357 0.92475 0.87885 0.90913 0.94515 0.91815 0.88680 0.81533 0.76487 0.91151 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.02 9.56 71.98 0.69 -2.33 16 2 C 0.08 2.33 3.09 30.60 0.09 2.42 16 3 C -0.16 -4.15 9.53 71.98 0.69 -3.46 16 4 O -0.31 -12.23 9.84 -88.21 -0.87 -13.10 16 5 C 0.35 14.96 8.45 180.57 1.53 16.49 16 6 N -0.51 -21.54 8.65 -312.81 -2.70 -24.25 16 7 C 0.05 2.31 10.57 84.91 0.90 3.21 16 8 C 0.08 3.34 6.66 38.48 0.26 3.60 16 9 N -0.55 -25.13 5.45 -183.70 -1.00 -26.13 16 10 C -0.32 -15.26 9.58 84.05 0.80 -14.45 16 11 H 0.11 4.91 5.77 -2.91 -0.02 4.89 16 12 C -0.02 -0.88 5.50 84.86 0.47 -0.42 16 13 N -0.92 -46.22 13.05 21.64 0.28 -45.93 16 14 Si 1.00 37.68 29.55 68.60 2.03 39.71 16 15 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 16 H -0.28 -10.61 7.11 99.48 0.71 -9.90 16 17 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 18 C 0.05 2.21 11.20 84.91 0.95 3.16 16 19 N -0.49 -21.57 10.45 -312.80 -3.27 -24.84 16 20 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 21 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 22 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 23 H 0.07 2.33 6.95 -2.39 -0.02 2.31 16 24 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 27 H 0.17 6.66 6.09 -2.91 -0.02 6.64 16 28 H 0.40 18.54 7.92 -92.71 -0.73 17.81 16 29 H 0.28 13.35 8.31 -92.71 -0.77 12.58 16 30 H 0.18 6.25 8.06 -2.91 -0.02 6.23 16 Total: -1.00 -56.33 264.41 1.26 -55.06 By element: Atomic # 1 Polarization: 30.83 SS G_CDS: 0.42 Total: 31.25 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 6.37 Total: 8.22 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.69 Total: -121.15 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: -0.87 Total: -13.10 kcal Atomic # 14 Polarization: 37.68 SS G_CDS: 2.03 Total: 39.71 kcal Total: -56.33 1.26 -55.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187588.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.281 kcal (2) G-P(sol) polarization free energy of solvation -56.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds