Wall clock time and date at job start Sun Mar 29 2020 21:50:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.47379 * 2 1 4 4 C 1.35506 * 117.00117 * 180.02562 * 3 2 1 5 5 C 1.39496 * 120.46414 * 180.02562 * 4 3 2 6 6 C 1.38259 * 118.50074 * 179.97438 * 5 4 3 7 7 N 1.32411 * 119.27079 * 359.97438 * 6 5 4 8 8 C 1.32501 * 120.89088 * 0.02562 * 7 6 5 9 9 N 1.38433 * 119.18852 * 180.02562 * 8 7 6 10 10 C 1.46505 * 120.00043 * 180.02562 * 9 8 7 11 11 C 1.36988 * 119.99928 * 0.02562 * 9 8 7 12 12 H 1.08001 * 120.00196 * 22.49033 * 11 9 8 13 13 C 1.38833 * 120.00287 * 202.49233 * 11 9 8 14 14 N 1.31544 * 119.99519 * 11.07923 * 13 11 9 15 15 Si 1.86793 * 120.00033 * 191.08308 * 13 11 9 16 16 H 1.48504 * 109.47155 * 59.99643 * 15 13 11 17 17 H 1.48506 * 109.46980 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47354 * 299.99496 * 15 13 11 19 19 N 1.32533 * 121.62901 * 359.74423 * 8 7 6 20 20 H 1.08997 * 109.46837 * 299.99687 * 1 2 3 21 21 H 1.09004 * 109.47107 * 60.00063 * 1 2 3 22 22 H 1.09001 * 109.46830 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47343 * 239.99913 * 2 1 3 24 24 H 1.08996 * 109.47288 * 120.00194 * 2 1 3 25 25 H 1.07990 * 120.74961 * 359.97438 * 5 4 3 26 26 H 1.07997 * 120.35902 * 179.97438 * 6 5 4 27 27 H 1.09000 * 109.47032 * 93.89891 * 10 9 8 28 28 H 1.08995 * 109.46680 * 213.89981 * 10 9 8 29 29 H 1.08998 * 109.46809 * 333.89414 * 10 9 8 30 30 H 0.97004 * 119.99498 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3498 1.5248 -0.0005 5 6 3.8934 2.8094 0.0000 6 6 5.2695 2.9435 -0.0001 7 7 6.0259 1.8567 -0.0001 8 6 5.4811 0.6488 -0.0005 9 7 6.3053 -0.4635 0.0000 10 6 5.7220 -1.8074 -0.0010 11 6 7.6663 -0.3075 0.0016 12 1 8.1040 0.6124 0.3601 13 6 8.4830 -1.3319 -0.4578 14 7 7.9576 -2.3572 -1.0927 15 14 10.3276 -1.2543 -0.1741 16 1 10.6024 -1.2029 1.2844 17 1 10.9691 -2.4606 -0.7561 18 1 10.8777 -0.0380 -0.8247 19 7 4.1667 0.4791 0.0040 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 3.2539 3.6796 0.0004 26 1 5.7224 3.9239 -0.0001 27 1 5.6426 -2.1682 -1.0265 28 1 6.3592 -2.4804 0.5726 29 1 4.7303 -1.7734 0.4501 30 1 8.5282 -3.0732 -1.4133 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166798634.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:50:01 Heat of formation + Delta-G solvation = 28.666605 kcal Electronic energy + Delta-G solvation = -15105.700531 eV Core-core repulsion = 12516.457015 eV Total energy + Delta-G solvation = -2589.243516 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.95750 -37.94850 -35.88727 -32.32289 -32.12671 -30.97859 -29.22740 -26.54758 -24.58884 -23.50663 -22.01857 -21.25151 -18.41324 -16.91543 -16.49095 -15.82889 -15.45423 -14.36570 -14.30570 -14.02188 -13.83487 -13.18744 -12.95023 -12.89716 -12.30578 -12.02925 -11.47376 -11.30742 -11.21451 -10.86790 -10.60507 -10.48345 -10.42330 -9.68539 -9.58772 -9.13071 -8.53281 -8.02311 -7.13716 -6.45234 -3.87529 2.28253 2.40566 3.16925 3.18157 3.20109 3.55048 3.94331 4.47929 4.73976 5.18666 5.23946 5.27773 5.31736 5.52985 5.73817 5.98017 6.03202 6.11310 6.18739 6.26819 6.55766 6.60539 6.88434 7.18542 7.24026 7.44663 7.64527 7.98868 8.29596 8.45915 9.05763 9.26499 9.79848 10.54550 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.040907 B = 0.007652 C = 0.006547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.322978 B = 3658.210199 C = 4275.999039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.067 3.933 3 O -0.314 6.314 4 C 0.400 3.600 5 C -0.376 4.376 6 C 0.213 3.787 7 N -0.586 5.586 8 C 0.525 3.475 9 N -0.390 5.390 10 C 0.131 3.869 11 C -0.288 4.288 12 H 0.110 0.890 13 C 0.026 3.974 14 N -0.873 5.873 15 Si 0.938 3.062 16 H -0.272 1.272 17 H -0.283 1.283 18 H -0.270 1.270 19 N -0.644 5.644 20 H 0.061 0.939 21 H 0.061 0.939 22 H 0.074 0.926 23 H 0.063 0.937 24 H 0.062 0.938 25 H 0.124 0.876 26 H 0.152 0.848 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.042 0.958 30 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 2.793 1.878 8.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.009 4.009 3 O -0.219 6.219 4 C 0.208 3.792 5 C -0.408 4.408 6 C 0.041 3.959 7 N -0.313 5.313 8 C 0.172 3.828 9 N -0.081 5.081 10 C -0.012 4.012 11 C -0.417 4.417 12 H 0.128 0.872 13 C -0.179 4.179 14 N -0.509 5.509 15 Si 0.764 3.236 16 H -0.197 1.197 17 H -0.208 1.208 18 H -0.195 1.195 19 N -0.388 5.388 20 H 0.080 0.920 21 H 0.080 0.920 22 H 0.092 0.908 23 H 0.082 0.918 24 H 0.081 0.919 25 H 0.142 0.858 26 H 0.170 0.830 27 H 0.078 0.922 28 H 0.083 0.917 29 H 0.061 0.939 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.967 1.562 1.783 7.359 hybrid contribution 0.288 0.410 -0.030 0.503 sum -6.679 1.972 1.752 7.181 Atomic orbital electron populations 1.21802 0.93753 1.02375 1.02833 1.22467 0.93886 0.82030 1.02533 1.86150 1.18045 1.29831 1.87894 1.19553 0.82783 0.89871 0.87013 1.20922 0.96600 0.95101 1.28159 1.22414 0.89095 0.96604 0.87768 1.67913 1.39698 0.97560 1.26086 1.18854 0.83282 0.86688 0.93968 1.42370 1.04346 1.01587 1.59814 1.21443 0.95428 0.82306 1.02070 1.19876 0.78900 1.03684 1.39256 0.87249 1.25514 1.01225 0.95947 0.95257 1.70098 1.36618 1.09952 1.34249 0.85799 0.80974 0.77928 0.78887 1.19694 1.20813 1.19477 1.67298 1.04936 1.33647 1.32873 0.91991 0.91963 0.90750 0.91833 0.91947 0.85828 0.83033 0.92188 0.91651 0.93937 0.91826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.16 0.38 -1.34 16 2 C 0.07 1.05 6.06 37.16 0.23 1.27 16 3 O -0.31 -5.86 10.13 -18.21 -0.18 -6.05 16 4 C 0.40 8.53 7.53 -16.71 -0.13 8.41 16 5 C -0.38 -7.36 10.12 -39.10 -0.40 -7.76 16 6 C 0.21 4.28 11.29 -17.29 -0.20 4.08 16 7 N -0.59 -14.32 9.22 -13.97 -0.13 -14.45 16 8 C 0.52 13.50 8.13 -322.71 -2.62 10.87 16 9 N -0.39 -10.40 3.11 -124.45 -0.39 -10.78 16 10 C 0.13 3.19 8.73 59.85 0.52 3.72 16 11 C -0.29 -7.80 9.29 -15.03 -0.14 -7.94 16 12 H 0.11 2.99 7.32 -52.49 -0.38 2.60 16 13 C 0.03 0.66 5.13 -17.45 -0.09 0.57 16 14 N -0.87 -23.08 10.58 55.49 0.59 -22.50 16 15 Si 0.94 20.12 29.57 -169.99 -5.03 15.09 16 16 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 17 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 18 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 19 N -0.64 -15.24 7.99 -13.95 -0.11 -15.36 16 20 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 21 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.05 8.12 -51.93 -0.42 0.63 16 24 H 0.06 1.01 8.12 -51.93 -0.42 0.59 16 25 H 0.12 2.06 8.06 -52.49 -0.42 1.64 16 26 H 0.15 2.37 8.06 -52.49 -0.42 1.95 16 27 H 0.06 1.53 7.44 -51.93 -0.39 1.14 16 28 H 0.06 1.60 7.17 -51.93 -0.37 1.23 16 29 H 0.04 0.96 7.20 -51.93 -0.37 0.58 16 30 H 0.27 6.76 8.31 -40.82 -0.34 6.43 16 LS Contribution 262.69 15.07 3.96 3.96 Total: -1.00 -29.54 262.69 -7.34 -36.89 By element: Atomic # 1 Polarization: 4.93 SS G_CDS: -3.61 Total: 1.32 kcal Atomic # 6 Polarization: 14.32 SS G_CDS: -2.44 Total: 11.88 kcal Atomic # 7 Polarization: -63.05 SS G_CDS: -0.04 Total: -63.09 kcal Atomic # 8 Polarization: -5.86 SS G_CDS: -0.18 Total: -6.05 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.54 -7.34 -36.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166798634.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.552 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds