Wall clock time and date at job start Sun Mar 29 2020 21:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.39664 * 120.00300 * 2 1 4 4 C 1.38889 * 120.06469 * 359.97438 * 3 2 1 5 5 C 1.38298 * 119.90350 * 180.02562 * 4 3 2 6 6 F 1.35104 * 119.98629 * 180.02562 * 5 4 3 7 7 C 1.38536 * 120.02368 * 359.74764 * 5 4 3 8 8 C 1.38222 * 120.12216 * 0.50789 * 7 5 4 9 9 C 1.50702 * 119.95108 * 179.76754 * 8 7 5 10 10 C 1.53001 * 109.47327 * 269.72683 * 9 8 7 11 11 C 1.50697 * 109.46995 * 179.97438 * 10 9 8 12 12 H 1.07991 * 120.00449 * 359.72153 * 11 10 9 13 13 C 1.37885 * 119.99686 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99913 * 359.72095 * 13 11 10 15 15 Si 1.86798 * 119.99766 * 179.72528 * 13 11 10 16 16 H 1.48490 * 109.47339 * 359.97438 * 15 13 11 17 17 H 1.48493 * 109.47239 * 120.00108 * 15 13 11 18 18 H 1.48504 * 109.46636 * 239.99667 * 15 13 11 19 19 C 1.38138 * 120.10261 * 359.48870 * 8 7 5 20 20 H 1.08993 * 109.47509 * 180.02562 * 1 2 3 21 21 H 1.09001 * 109.46888 * 300.00612 * 1 2 3 22 22 H 1.09003 * 109.46981 * 59.99693 * 1 2 3 23 23 H 0.97006 * 119.99541 * 179.97438 * 2 1 3 24 24 H 1.08007 * 120.04414 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.94022 * 180.25687 * 7 5 4 26 26 H 1.08998 * 109.47519 * 149.72385 * 9 8 7 27 27 H 1.09006 * 109.47270 * 29.72616 * 9 8 7 28 28 H 1.08998 * 109.47065 * 59.99424 * 10 9 8 29 29 H 1.09001 * 109.46892 * 299.99688 * 10 9 8 30 30 H 0.97000 * 119.99651 * 180.02562 * 14 13 11 31 31 H 1.07993 * 120.01558 * 180.22487 * 19 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1634 1.2095 0.0000 4 6 1.4704 2.4131 -0.0005 5 6 2.1653 3.6088 -0.0011 6 9 1.4928 4.7806 -0.0011 7 6 3.5506 3.6054 0.0042 8 6 4.2414 2.4082 -0.0006 9 6 5.7484 2.4091 -0.0001 10 6 6.2589 2.4085 -1.4424 11 6 7.7659 2.4100 -1.4419 12 1 8.3056 2.4157 -0.5065 13 6 8.4557 2.4092 -2.6358 14 7 7.7985 2.4017 -3.7749 15 14 10.3237 2.4188 -2.6351 16 1 10.8181 2.4270 -1.2350 17 1 10.8251 1.2064 -3.3306 18 1 10.8126 3.6313 -3.3394 19 6 3.5525 1.2109 0.0000 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 1.9500 -0.8401 0.0004 24 1 0.3903 2.4152 -0.0005 25 1 4.0919 4.5400 0.0080 26 1 6.1121 1.5196 0.5144 27 1 6.1111 3.2996 0.5133 28 1 5.8952 3.2979 -1.9569 29 1 5.8963 1.5179 -1.9558 30 1 8.2838 2.4008 -4.6148 31 1 4.0936 0.2763 0.0000 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059460.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:54 Heat of formation + Delta-G solvation = -38.168033 kcal Electronic energy + Delta-G solvation = -14421.530977 eV Core-core repulsion = 11809.469332 eV Total energy + Delta-G solvation = -2612.061645 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.107 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -48.55660 -39.15291 -35.79195 -33.57486 -31.76535 -29.72740 -28.71190 -25.95015 -24.88476 -22.21162 -21.65648 -19.87885 -17.45465 -16.47368 -16.21443 -15.82098 -15.27011 -15.07873 -14.50111 -14.45547 -14.19923 -13.19886 -13.03731 -12.50021 -12.18520 -12.14498 -11.94478 -11.40680 -11.25438 -10.93007 -10.88123 -10.48998 -9.92381 -9.83835 -9.40539 -9.08244 -8.34814 -8.16996 -7.30610 -5.99198 -4.02268 1.62094 1.83096 3.31794 3.39312 3.43283 3.45876 4.07192 4.46851 4.66537 5.02273 5.14755 5.34994 5.36542 5.46279 5.47842 5.58012 5.80132 5.88116 6.27764 6.30203 6.48083 6.58879 6.65853 6.93732 7.06367 7.16963 7.48556 7.69156 7.73338 7.82764 8.00879 8.40776 9.05043 9.61807 11.11918 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.036307 B = 0.005800 C = 0.005328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.007903 B = 4826.127023 C = 5254.390838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.753 5.753 3 C 0.236 3.764 4 C -0.251 4.251 5 C 0.139 3.861 6 F -0.146 7.146 7 C -0.207 4.207 8 C 0.016 3.984 9 C -0.081 4.081 10 C 0.029 3.971 11 C -0.522 4.522 12 H 0.057 0.943 13 C 0.057 3.943 14 N -0.894 5.894 15 Si 0.892 3.108 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.202 4.202 20 H 0.071 0.929 21 H 0.050 0.950 22 H 0.051 0.949 23 H 0.402 0.598 24 H 0.125 0.875 25 H 0.130 0.870 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.260 0.740 31 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.108 -3.520 7.886 15.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.384 5.384 3 C 0.133 3.867 4 C -0.274 4.274 5 C 0.120 3.880 6 F -0.125 7.125 7 C -0.228 4.228 8 C 0.015 3.985 9 C -0.119 4.119 10 C -0.008 4.008 11 C -0.560 4.560 12 H 0.075 0.925 13 C -0.144 4.144 14 N -0.533 5.533 15 Si 0.720 3.280 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.225 4.225 20 H 0.089 0.911 21 H 0.068 0.932 22 H 0.069 0.931 23 H 0.236 0.764 24 H 0.143 0.857 25 H 0.148 0.852 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.070 0.930 31 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.335 -3.447 7.699 15.779 hybrid contribution 0.965 -0.104 -0.242 1.001 sum -12.369 -3.551 7.456 14.873 Atomic orbital electron populations 1.21495 0.80544 1.02030 1.01001 1.44364 1.05464 1.05320 1.83212 1.17432 0.90877 0.85554 0.92793 1.20270 0.99700 0.90316 1.17121 1.17355 0.89974 0.80348 1.00362 1.91448 1.80746 1.46407 1.93901 1.20841 0.91605 0.99668 1.10680 1.19918 0.97393 0.91059 0.90146 1.20898 0.87290 1.01667 1.02028 1.19080 0.95446 0.97722 0.88511 1.21288 0.91625 1.50680 0.92390 0.92478 1.25028 0.98438 0.95311 0.95651 1.69987 1.35319 1.50766 0.97262 0.86536 0.85818 0.77571 0.78088 1.19695 1.21040 1.21013 1.20561 0.91311 0.98866 1.11716 0.91060 0.93179 0.93076 0.76361 0.85688 0.85212 0.91848 0.91825 0.96279 0.96288 0.93035 0.85721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.82 9.94 59.85 0.60 1.41 16 2 N -0.75 -8.67 5.89 -65.40 -0.39 -9.05 16 3 C 0.24 3.54 6.65 -83.80 -0.56 2.98 16 4 C -0.25 -3.83 9.29 -39.32 -0.37 -4.20 16 5 C 0.14 2.35 7.30 -39.45 -0.29 2.07 16 6 F -0.15 -2.43 17.27 2.25 0.04 -2.39 16 7 C -0.21 -3.74 9.67 -39.48 -0.38 -4.12 16 8 C 0.02 0.29 5.13 -104.66 -0.54 -0.24 16 9 C -0.08 -1.68 5.28 -27.88 -0.15 -1.83 16 10 C 0.03 0.76 4.96 -27.88 -0.14 0.62 16 11 C -0.52 -14.69 9.11 -34.44 -0.31 -15.01 16 12 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 14 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 15 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 C -0.20 -3.38 9.55 -39.37 -0.38 -3.76 16 20 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 21 H 0.05 0.42 7.95 -51.93 -0.41 0.01 16 22 H 0.05 0.46 7.95 -51.93 -0.41 0.04 16 23 H 0.40 3.95 8.84 -40.82 -0.36 3.59 16 24 H 0.13 1.65 6.73 -52.48 -0.35 1.29 16 25 H 0.13 2.27 8.06 -52.48 -0.42 1.84 16 26 H 0.06 1.24 8.08 -51.93 -0.42 0.82 16 27 H 0.06 1.27 8.08 -51.93 -0.42 0.85 16 28 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 LS Contribution 273.86 15.07 4.13 4.13 Total: -1.00 -30.89 273.86 -7.14 -38.04 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -4.03 Total: -0.47 kcal Atomic # 6 Polarization: -17.92 SS G_CDS: -2.61 Total: -20.53 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.35 Total: -35.35 kcal Atomic # 9 Polarization: -2.43 SS G_CDS: 0.04 Total: -2.39 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.89 -7.14 -38.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059460.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.132 kcal (2) G-P(sol) polarization free energy of solvation -30.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds