Wall clock time and date at job start Sun Mar 29 2020 21:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00493 * 2 1 3 5 5 H 1.07998 * 119.99629 * 239.99904 * 4 2 1 6 6 C 1.37875 * 119.99955 * 59.99333 * 4 2 1 7 7 N 1.31510 * 120.00308 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99908 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47233 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.46997 * 120.00173 * 8 6 4 11 11 H 1.48501 * 109.47364 * 240.00497 * 8 6 4 12 12 N 1.46500 * 109.47473 * 120.00128 * 2 1 3 13 13 C 1.34768 * 120.00056 * 275.00296 * 12 2 1 14 14 O 1.21278 * 120.00079 * 359.97438 * 13 12 2 15 15 C 1.50705 * 120.00177 * 179.97438 * 13 12 2 16 16 C 1.50697 * 109.47437 * 179.97438 * 15 13 12 17 17 N 1.30505 * 125.65031 * 305.03086 * 16 15 13 18 18 C 1.34126 * 109.25483 * 179.97438 * 17 16 15 19 19 C 1.34669 * 108.01961 * 359.97438 * 18 17 16 20 20 N 1.35039 * 125.64924 * 124.71731 * 16 15 13 21 21 H 0.96997 * 126.39833 * 0.02562 * 20 16 15 22 22 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 23 23 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 25 25 H 0.96998 * 120.00365 * 179.97438 * 7 6 4 26 26 H 0.97001 * 119.99547 * 95.00125 * 12 2 1 27 27 H 1.08996 * 109.47135 * 300.00342 * 15 13 12 28 28 H 1.09000 * 109.46519 * 60.00292 * 15 13 12 29 29 H 1.07999 * 125.99018 * 180.02562 * 18 17 16 30 30 H 1.08004 * 126.59007 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1201 -4.0080 9 1 3.1455 -2.2874 -3.6040 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1871 -4.8166 12 7 2.0184 -0.6906 1.1961 13 6 2.1471 -0.0184 2.3570 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5877 16 6 2.7004 0.2395 4.7411 17 7 3.3343 1.3802 4.7489 18 6 3.1607 1.9746 5.9387 19 6 2.3894 1.1721 6.6967 20 7 2.0931 0.0735 5.9358 21 1 1.5500 -0.6837 6.2051 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5139 -0.8900 25 1 0.7093 1.1619 -3.4844 26 1 2.2491 -1.6318 1.1525 27 1 1.9762 -1.5508 3.8325 28 1 3.6481 -1.1213 3.3984 29 1 3.5674 2.9298 6.2363 30 1 2.0645 1.3605 7.7093 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327831732.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:16 Heat of formation + Delta-G solvation = -10.890339 kcal Electronic energy + Delta-G solvation = -14782.842963 eV Core-core repulsion = 12191.884129 eV Total energy + Delta-G solvation = -2590.958834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -42.90893 -40.33189 -36.67456 -34.30799 -33.40656 -32.98698 -30.73880 -28.10802 -27.31173 -23.43067 -22.42979 -21.71917 -20.97771 -19.12148 -18.57110 -17.48215 -17.07349 -16.27353 -16.00300 -15.48309 -14.98090 -14.73431 -14.50052 -14.30351 -13.81416 -13.72252 -13.17291 -12.94107 -12.77033 -12.65736 -12.25564 -12.09115 -11.07058 -10.94298 -10.83820 -10.70721 -10.55499 -9.68957 -9.28229 -8.15531 -6.33188 1.13804 1.45967 1.47090 1.59304 1.90828 2.11751 2.31534 2.41737 2.86645 3.15249 3.47036 4.10909 4.20499 4.45300 4.48044 4.64142 4.77466 4.83813 4.93182 5.11812 5.19084 5.46734 5.64823 5.72351 5.87799 5.95528 6.12721 6.59882 6.76192 7.04511 7.29366 7.35504 7.66402 8.91244 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.066651 B = 0.005521 C = 0.005452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 419.999572 B = 5070.156931 C = 5134.667565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.270 3.730 3 H -0.009 1.009 4 C -0.543 4.543 5 H 0.077 0.923 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.975 3.025 9 H -0.257 1.257 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.705 5.705 13 C 0.498 3.502 14 O -0.588 6.588 15 C -0.044 4.044 16 C 0.202 3.798 17 N -0.521 5.521 18 C -0.073 4.073 19 C -0.033 4.033 20 N -0.552 5.552 21 H 0.436 0.564 22 H 0.008 0.992 23 H 0.045 0.955 24 H 0.063 0.937 25 H 0.264 0.736 26 H 0.408 0.592 27 H 0.150 0.850 28 H 0.138 0.862 29 H 0.176 0.824 30 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.599 -8.206 16.366 18.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.166 3.834 3 H 0.009 0.991 4 C -0.581 4.581 5 H 0.095 0.905 6 C -0.189 4.189 7 N -0.560 5.560 8 Si 0.799 3.201 9 H -0.181 1.181 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.355 5.355 13 C 0.284 3.716 14 O -0.468 6.468 15 C -0.085 4.085 16 C -0.063 4.063 17 N -0.241 5.241 18 C -0.220 4.220 19 C -0.168 4.168 20 N -0.157 5.157 21 H 0.278 0.722 22 H 0.028 0.972 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.074 0.926 26 H 0.244 0.756 27 H 0.168 0.832 28 H 0.155 0.845 29 H 0.193 0.807 30 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 1.786 -6.913 15.612 17.167 hybrid contribution -0.469 -0.644 -0.280 0.844 sum 1.317 -7.557 15.332 17.144 Atomic orbital electron populations 1.21875 0.98323 0.99550 0.99278 1.18300 0.91091 0.91739 0.82237 0.99130 1.21606 1.32346 1.13509 0.90689 0.90502 1.25851 0.94917 0.95596 1.02515 1.70077 1.37278 1.24116 1.24487 0.85257 0.78056 0.78510 0.78252 1.18055 1.20409 1.21236 1.46171 1.65703 1.14277 1.09397 1.20992 0.77849 0.87176 0.85562 1.90701 1.51954 1.18393 1.85752 1.20039 1.06639 0.95590 0.86270 1.22625 0.98698 0.96165 0.88835 1.70179 1.24172 1.06657 1.23108 1.22799 1.05551 1.02894 0.90803 1.23308 1.04398 0.88703 1.00410 1.43175 1.40551 1.20005 1.11988 0.72240 0.97245 0.93637 0.91809 0.92647 0.75644 0.83192 0.84455 0.80654 0.76203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.76 9.26 71.98 0.67 -6.10 16 2 C 0.27 14.30 2.56 44.25 0.11 14.41 16 3 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16 4 C -0.54 -28.96 8.73 25.60 0.22 -28.74 16 5 H 0.08 3.77 7.74 -2.91 -0.02 3.75 16 6 C 0.01 0.59 5.30 84.65 0.45 1.03 16 7 N -0.92 -53.98 11.32 21.45 0.24 -53.74 16 8 Si 0.97 42.30 29.54 68.60 2.03 44.33 16 9 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 10 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 11 H -0.29 -12.50 7.11 99.48 0.71 -11.80 16 12 N -0.71 -28.88 5.07 -446.10 -2.26 -31.14 16 13 C 0.50 20.09 7.78 87.66 0.68 20.78 16 14 O -0.59 -30.88 15.21 -3.02 -0.05 -30.92 16 15 C -0.04 -1.14 6.33 29.10 0.18 -0.95 16 16 C 0.20 6.02 6.96 138.13 0.96 6.98 16 17 N -0.52 -19.52 10.58 -188.14 -1.99 -21.51 16 18 C -0.07 -2.12 11.87 83.52 0.99 -1.13 16 19 C -0.03 -0.67 12.04 83.09 1.00 0.33 16 20 N -0.55 -11.17 6.15 -186.27 -1.15 -12.31 16 21 H 0.44 4.86 8.96 -92.71 -0.83 4.03 16 22 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 23 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 24 H 0.06 3.62 6.07 -2.38 -0.01 3.60 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.41 13.24 8.54 -92.71 -0.79 12.45 16 27 H 0.15 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.14 2.90 8.14 -2.39 -0.02 2.88 16 29 H 0.18 4.32 8.06 -2.91 -0.02 4.29 16 30 H 0.22 2.16 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -81.75 265.90 1.64 -80.11 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -0.45 Total: 18.59 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 5.27 Total: 6.61 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -5.15 Total: -118.71 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Total: -81.75 1.64 -80.11 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327831732.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.217 kcal (2) G-P(sol) polarization free energy of solvation -81.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds