Wall clock time and date at job start Sun Mar 29 2020 21:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.35045 * 126.39849 * 2 1 4 4 N 1.30495 * 108.69990 * 179.82112 * 3 2 1 5 5 C 1.34128 * 109.25774 * 0.44365 * 4 3 2 6 6 C 1.34669 * 108.01780 * 359.72199 * 5 4 3 7 7 C 1.50703 * 126.59045 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46568 * 84.96050 * 7 6 5 9 9 O 1.21283 * 120.00409 * 359.97438 * 8 7 6 10 10 N 1.34781 * 119.99662 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99811 * 179.97438 * 10 8 7 12 12 C 1.50703 * 109.47066 * 179.97438 * 11 10 8 13 13 H 1.08001 * 119.99742 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00102 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99783 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99872 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47194 * 90.00316 * 16 14 12 18 18 H 1.48507 * 109.46804 * 209.99753 * 16 14 12 19 19 H 1.48497 * 109.47264 * 330.00022 * 16 14 12 20 20 H 1.09002 * 109.47391 * 269.69091 * 1 2 3 21 21 H 1.09001 * 109.46813 * 149.69147 * 1 2 3 22 22 H 1.09004 * 109.47041 * 29.69274 * 1 2 3 23 23 H 1.07997 * 125.64821 * 359.97332 * 3 2 1 24 24 H 1.08000 * 125.99029 * 179.72614 * 5 4 3 25 25 H 1.08996 * 109.47055 * 204.96012 * 7 6 5 26 26 H 1.09006 * 109.47116 * 324.96560 * 7 6 5 27 27 H 0.96996 * 120.00004 * 0.02562 * 10 8 7 28 28 H 1.08996 * 109.48091 * 300.00325 * 11 10 8 29 29 H 1.09006 * 109.46629 * 60.00696 * 11 10 8 30 30 H 0.97000 * 119.99545 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0870 0.0000 4 7 3.5095 0.6903 0.0039 5 6 3.5461 -0.6505 -0.0034 6 6 2.2772 -1.1018 -0.0058 7 6 1.8363 -2.5428 -0.0131 8 6 1.8085 -3.0666 1.3997 9 8 2.1168 -2.3413 2.3216 10 7 1.4410 -4.3411 1.6388 11 6 1.4144 -4.8505 3.0121 12 6 0.9722 -6.2911 3.0051 13 1 0.7351 -6.7786 2.0710 14 6 0.8704 -6.9868 4.1911 15 7 1.1587 -6.3930 5.3286 16 14 0.3229 -8.7727 4.1823 17 1 1.5113 -9.6542 4.0551 18 1 -0.3871 -9.0790 5.4501 19 1 -0.5906 -9.0048 3.0348 20 1 -0.3634 -0.0055 1.0276 21 1 -0.3633 -0.8872 -0.5186 22 1 -0.3633 0.8928 -0.5091 23 1 1.9334 2.1144 -0.0004 24 1 4.4369 -1.2611 -0.0066 25 1 0.8392 -2.6155 -0.4472 26 1 2.5348 -3.1335 -0.6059 27 1 1.1947 -4.9212 0.9014 28 1 2.4118 -4.7783 3.4459 29 1 0.7166 -4.2595 3.6053 30 1 1.0873 -6.8826 6.1629 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344017198.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:38 Heat of formation + Delta-G solvation = -8.872085 kcal Electronic energy + Delta-G solvation = -14637.845689 eV Core-core repulsion = 12046.974373 eV Total energy + Delta-G solvation = -2590.871316 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 223.106 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.00995 -40.35547 -36.15077 -34.93849 -34.36918 -33.11658 -29.64904 -27.83740 -27.64939 -24.65163 -22.37693 -21.83208 -20.75324 -18.97970 -17.96191 -17.58967 -16.97561 -16.46480 -16.38037 -15.93842 -15.26621 -14.62383 -14.54007 -14.12393 -13.99962 -13.91763 -13.72341 -13.30042 -12.93954 -12.86773 -12.68586 -12.21954 -11.48514 -10.96776 -10.87559 -10.80460 -10.44370 -9.83370 -9.29324 -8.29127 -6.46011 1.04368 1.44157 1.46393 1.57577 1.75959 1.97280 2.18645 2.35565 2.71920 3.06179 3.60313 3.91039 4.00736 4.08448 4.19715 4.35188 4.49190 4.59925 4.72355 4.86776 5.12141 5.23399 5.41079 5.48649 5.69455 5.78704 5.85053 6.35167 6.65766 6.91606 7.13275 7.23951 7.51317 8.83160 Molecular weight = 223.11amu Principal moments of inertia in cm(-1) A = 0.062743 B = 0.005154 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 446.158460 B = 5431.371863 C = 5501.949973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.457 5.457 3 C 0.180 3.820 4 N -0.537 5.537 5 C -0.044 4.044 6 C -0.011 4.011 7 C -0.050 4.050 8 C 0.496 3.504 9 O -0.600 6.600 10 N -0.705 5.705 11 C 0.266 3.734 12 C -0.554 4.554 13 H 0.087 0.913 14 C 0.003 3.997 15 N -0.933 5.933 16 Si 0.985 3.015 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.253 1.253 20 H 0.067 0.933 21 H 0.100 0.900 22 H 0.123 0.877 23 H 0.242 0.758 24 H 0.165 0.835 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.411 0.589 28 H -0.016 1.016 29 H -0.015 1.015 30 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.667 7.940 -15.420 17.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.139 5.139 3 C -0.103 4.103 4 N -0.256 5.256 5 C -0.191 4.191 6 C -0.127 4.127 7 C -0.091 4.091 8 C 0.283 3.717 9 O -0.481 6.481 10 N -0.355 5.355 11 C 0.143 3.857 12 C -0.592 4.592 13 H 0.105 0.895 14 C -0.197 4.197 15 N -0.572 5.572 16 Si 0.808 3.192 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.176 1.176 20 H 0.085 0.915 21 H 0.119 0.881 22 H 0.142 0.858 23 H 0.258 0.742 24 H 0.182 0.818 25 H 0.151 0.849 26 H 0.162 0.838 27 H 0.247 0.753 28 H 0.002 0.998 29 H 0.003 0.997 30 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.944 8.930 -14.572 17.539 hybrid contribution -0.717 -1.408 0.595 1.688 sum -4.661 7.522 -13.976 16.542 Atomic orbital electron populations 1.22362 0.74407 1.07005 1.04031 1.45457 1.08987 1.06009 1.53488 1.25601 0.85080 0.94843 1.04735 1.70171 1.21569 1.12330 1.21552 1.22184 0.96630 0.91460 1.08837 1.20710 0.91330 0.89754 1.10907 1.20089 1.06837 0.89432 0.92702 1.21361 0.76414 0.81749 0.92214 1.90683 1.50695 1.58452 1.48305 1.46153 1.66827 1.12031 1.10518 1.18517 0.94125 0.93803 0.79214 1.21640 1.47017 0.95935 0.94629 0.89479 1.26087 0.94766 1.04217 0.94621 1.70149 1.48782 1.39385 0.98902 0.85147 0.78603 0.77345 0.78058 1.19709 1.21152 1.17628 0.91470 0.88133 0.85816 0.74222 0.81752 0.84950 0.83785 0.75253 0.99843 0.99657 0.92311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.93 11.00 127.77 1.41 2.34 16 2 N -0.46 -11.09 3.15 -537.88 -1.70 -12.78 16 3 C 0.18 4.50 12.56 180.26 2.26 6.77 16 4 N -0.54 -17.68 11.25 -200.32 -2.25 -19.93 16 5 C -0.04 -1.43 11.79 83.52 0.98 -0.44 16 6 C -0.01 -0.32 5.45 40.95 0.22 -0.10 16 7 C -0.05 -1.23 6.04 29.10 0.18 -1.05 16 8 C 0.50 19.02 7.82 87.66 0.69 19.70 16 9 O -0.60 -30.12 16.03 -3.04 -0.05 -30.17 16 10 N -0.70 -28.31 5.55 -466.77 -2.59 -30.90 16 11 C 0.27 14.45 5.43 85.63 0.46 14.91 16 12 C -0.55 -29.55 9.28 25.60 0.24 -29.31 16 13 H 0.09 4.12 7.60 -2.91 -0.02 4.10 16 14 C 0.00 0.14 5.46 84.66 0.46 0.60 16 15 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 16 Si 0.99 41.63 29.54 68.60 2.03 43.66 16 17 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 18 H -0.29 -12.05 7.11 99.48 0.71 -11.34 16 19 H -0.25 -9.79 7.11 99.48 0.71 -9.09 16 20 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 21 H 0.10 1.15 7.12 -2.39 -0.02 1.13 16 22 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 23 H 0.24 3.60 8.06 -2.91 -0.02 3.57 16 24 H 0.17 5.07 8.06 -2.91 -0.02 5.04 16 25 H 0.13 2.22 7.09 -2.39 -0.02 2.21 16 26 H 0.14 2.66 8.14 -2.38 -0.02 2.64 16 27 H 0.41 13.00 8.32 -92.71 -0.77 12.22 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 30 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 Total: -1.00 -81.24 270.22 3.01 -78.24 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.38 Total: 14.49 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.90 Total: 13.41 kcal Atomic # 7 Polarization: -113.37 SS G_CDS: -6.25 Total: -119.62 kcal Atomic # 8 Polarization: -30.12 SS G_CDS: -0.05 Total: -30.17 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -81.24 3.01 -78.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344017198.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.365 kcal (2) G-P(sol) polarization free energy of solvation -81.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds