Wall clock time and date at job start Sun Mar 29 2020 22:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50701 * 120.00435 * 2 1 4 4 C 1.52994 * 109.47338 * 124.99498 * 3 2 1 5 5 C 1.53001 * 109.47200 * 185.01250 * 4 3 2 6 6 H 1.09001 * 109.87159 * 55.54866 * 5 4 3 7 7 C 1.54328 * 109.88218 * 294.53685 * 5 4 3 8 8 C 1.55158 * 102.93912 * 218.23136 * 7 5 4 9 9 C 1.54908 * 101.58035 * 35.50197 * 8 7 5 10 10 N 1.47015 * 110.01385 * 176.64565 * 5 4 3 11 11 C 1.34781 * 125.65130 * 298.46848 * 10 5 4 12 12 O 1.21689 * 119.99678 * 4.89445 * 11 10 5 13 13 C 1.46371 * 120.00004 * 184.89306 * 11 10 5 14 14 H 1.07997 * 119.99976 * 359.97438 * 13 11 10 15 15 C 1.40048 * 119.99771 * 180.02562 * 13 11 10 16 16 N 1.30674 * 119.99865 * 0.02562 * 15 13 11 17 17 Si 1.86803 * 120.00138 * 179.97438 * 15 13 11 18 18 H 1.48507 * 109.46608 * 89.99936 * 17 15 13 19 19 H 1.48492 * 109.47221 * 209.99986 * 17 15 13 20 20 H 1.48494 * 109.47227 * 330.00471 * 17 15 13 21 21 H 1.07990 * 120.00147 * 179.97438 * 1 2 3 22 22 H 1.08001 * 119.99273 * 0.02562 * 1 2 3 23 23 H 1.08006 * 119.99738 * 179.97438 * 2 1 3 24 24 H 1.09003 * 109.46553 * 4.99408 * 3 2 1 25 25 H 1.09001 * 109.46698 * 244.99993 * 3 2 1 26 26 H 1.09002 * 109.47329 * 65.01611 * 4 3 2 27 27 H 1.09001 * 109.47268 * 305.01438 * 4 3 2 28 28 H 1.08992 * 110.72218 * 99.87168 * 7 5 4 29 29 H 1.09001 * 110.86979 * 336.66279 * 7 5 4 30 30 H 1.08995 * 111.00578 * 277.42796 * 8 7 5 31 31 H 1.08998 * 111.00386 * 153.57338 * 8 7 5 32 32 H 1.09005 * 110.37202 * 81.83163 * 9 8 7 33 33 H 1.09007 * 110.36672 * 204.15208 * 9 8 7 34 34 H 0.97007 * 119.99515 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 6 3.7090 2.7046 1.2554 6 1 2.9520 3.4869 1.3112 7 6 4.5965 2.9209 0.0115 8 6 5.8314 3.6608 0.5902 9 6 5.9707 2.9928 1.9808 10 7 4.5853 2.7719 2.4339 11 6 4.1881 2.6509 3.7162 12 8 3.0293 2.3806 3.9712 13 6 5.1505 2.8446 4.8019 14 1 6.1789 3.0840 4.5755 15 6 4.7377 2.7183 6.1342 16 7 3.4936 2.4271 6.4080 17 14 5.9660 2.9647 7.5199 18 1 5.9804 4.3948 7.9200 19 1 5.5742 2.1291 8.6831 20 1 7.3199 2.5664 7.0579 21 1 -0.5400 -0.9352 -0.0004 22 1 -0.5399 0.9354 -0.0004 23 1 1.8500 -0.9354 0.0004 24 1 1.3586 2.1316 0.0895 25 1 2.6214 1.4024 -0.9314 26 1 3.7938 0.5622 1.0466 27 1 2.4883 1.1467 2.1060 28 1 4.0849 3.5415 -0.7241 29 1 4.8891 1.9670 -0.4273 30 1 5.6368 4.7288 0.6875 31 1 6.7163 3.4806 -0.0202 32 1 6.4977 2.0425 1.8943 33 1 6.4939 3.6562 2.6697 34 1 3.2079 2.3392 7.3308 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001353904245.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:28:10 Heat of formation + Delta-G solvation = -53.665913 kcal Electronic energy + Delta-G solvation = -15441.598475 eV Core-core repulsion = 12952.325097 eV Total energy + Delta-G solvation = -2489.273378 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.131 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43181 -37.77682 -36.32164 -34.64931 -32.59196 -31.82859 -28.62196 -27.85084 -24.79032 -23.14848 -22.00646 -20.75600 -20.26527 -18.41650 -17.70601 -16.86077 -16.31635 -16.03211 -15.33647 -15.02810 -14.58787 -14.45333 -14.15124 -13.66383 -13.35935 -13.17072 -12.95674 -12.79632 -12.62632 -12.47023 -12.18453 -11.97360 -11.88083 -11.81689 -11.47999 -11.27310 -10.93933 -10.22809 -9.76064 -9.02583 -8.29260 -6.85012 1.37277 1.39238 1.40630 1.54496 2.22618 2.45816 2.91771 3.58001 3.81523 3.86525 3.94561 4.17039 4.22004 4.39412 4.46145 4.58308 4.60959 4.77776 4.81861 4.98225 4.99854 5.02368 5.13813 5.20953 5.31713 5.32850 5.41000 5.50599 5.71354 5.74737 5.90311 6.08740 6.48476 6.86352 7.53163 8.48565 8.68016 Molecular weight = 223.13amu Principal moments of inertia in cm(-1) A = 0.028443 B = 0.008053 C = 0.006492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.191056 B = 3475.999715 C = 4312.285362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.162 4.162 3 C -0.080 4.080 4 C -0.113 4.113 5 C 0.135 3.865 6 H 0.030 0.970 7 C -0.113 4.113 8 C -0.121 4.121 9 C 0.106 3.894 10 N -0.652 5.652 11 C 0.552 3.448 12 O -0.626 6.626 13 C -0.569 4.569 14 H 0.085 0.915 15 C 0.028 3.972 16 N -0.823 5.823 17 Si 0.997 3.003 18 H -0.261 1.261 19 H -0.272 1.272 20 H -0.249 1.249 21 H 0.110 0.890 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.026 0.974 28 H 0.097 0.903 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.111 0.889 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.322 -0.250 -12.847 13.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.180 4.180 3 C -0.117 4.117 4 C -0.152 4.152 5 C 0.031 3.969 6 H 0.048 0.952 7 C -0.150 4.150 8 C -0.159 4.159 9 C -0.017 4.017 10 N -0.389 5.389 11 C 0.358 3.642 12 O -0.513 6.513 13 C -0.605 4.605 14 H 0.103 0.897 15 C -0.187 4.187 16 N -0.453 5.453 17 Si 0.816 3.184 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.172 1.172 21 H 0.128 0.872 22 H 0.113 0.887 23 H 0.131 0.869 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.129 0.871 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 3.539 -0.430 -12.513 13.011 hybrid contribution -0.013 -0.042 1.132 1.133 sum 3.525 -0.471 -11.381 11.923 Atomic orbital electron populations 1.23988 0.95918 1.02421 1.01465 1.23102 0.96530 0.98770 0.99639 1.20675 0.97574 0.95278 0.98193 1.21756 0.98236 0.97225 0.97985 1.21466 0.92995 0.95486 0.86977 0.95166 1.22678 0.95503 1.02022 0.94823 1.22772 0.99321 0.99460 0.94321 1.22182 0.83957 0.99264 0.96326 1.48634 1.08560 1.77034 1.04672 1.18360 0.88029 0.76605 0.81160 1.90538 1.22074 1.55186 1.83465 1.21427 0.96922 1.51524 0.90653 0.89713 1.27001 0.97482 0.91502 1.02724 1.70206 1.18825 1.35527 1.20708 0.85033 0.78345 0.79147 0.75860 1.18520 1.19715 1.17177 0.87182 0.88661 0.86947 0.92397 0.88359 0.92522 0.95506 0.88413 0.89261 0.91100 0.87094 0.92890 0.92208 0.91659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.24 14.32 67.78 0.97 -4.27 16 2 C -0.16 -4.56 9.52 25.65 0.24 -4.32 16 3 C -0.08 -2.34 5.41 29.85 0.16 -2.18 16 4 C -0.11 -4.43 4.65 30.59 0.14 -4.28 16 5 C 0.13 5.31 2.94 45.34 0.13 5.44 16 6 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 7 C -0.11 -2.92 5.61 31.78 0.18 -2.74 16 8 C -0.12 -3.08 7.09 31.99 0.23 -2.86 16 9 C 0.11 3.85 6.62 86.85 0.57 4.43 16 10 N -0.65 -31.14 3.07 -793.08 -2.43 -33.57 16 11 C 0.55 33.61 7.60 86.36 0.66 34.26 16 12 O -0.63 -43.50 13.83 -4.31 -0.06 -43.56 16 13 C -0.57 -33.47 9.00 24.83 0.22 -33.25 16 14 H 0.08 4.52 6.54 -2.91 -0.02 4.50 16 15 C 0.03 1.58 5.50 85.30 0.47 2.05 16 16 N -0.82 -51.89 11.83 21.84 0.26 -51.63 16 17 Si 1.00 42.04 29.56 68.60 2.03 44.07 16 18 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.25 -9.71 7.11 99.48 0.71 -9.01 16 21 H 0.11 2.43 8.06 -2.92 -0.02 2.41 16 22 H 0.10 2.43 7.84 -2.91 -0.02 2.41 16 23 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 24 H 0.06 1.75 7.79 -2.39 -0.02 1.74 16 25 H 0.10 2.25 7.58 -2.39 -0.02 2.23 16 26 H 0.06 2.12 8.07 -2.39 -0.02 2.10 16 27 H 0.03 1.35 6.60 -2.39 -0.02 1.33 16 28 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 29 H 0.09 2.01 7.80 -2.39 -0.02 1.99 16 30 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.06 2.25 6.96 -2.38 -0.02 2.23 16 34 H 0.27 15.61 8.29 -92.70 -0.77 14.84 16 Total: -1.00 -78.77 282.16 4.83 -73.94 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 1.06 Total: 18.47 kcal Atomic # 6 Polarization: -11.69 SS G_CDS: 3.98 Total: -7.71 kcal Atomic # 7 Polarization: -83.03 SS G_CDS: -2.18 Total: -85.20 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -0.06 Total: -43.56 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.03 Total: 44.07 kcal Total: -78.77 4.83 -73.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001353904245.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.272 kcal (2) G-P(sol) polarization free energy of solvation -78.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds