Wall clock time and date at job start Sun Mar 29 2020 22:32:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.09002 * 109.46784 * 304.99799 * 3 2 1 5 5 C 1.52998 * 109.47335 * 64.99905 * 3 2 1 6 6 C 1.52998 * 109.46855 * 185.00270 * 3 2 1 7 7 N 1.46505 * 109.46658 * 174.99929 * 6 3 2 8 8 C 1.35310 * 125.86763 * 125.29510 * 7 6 3 9 9 C 1.35348 * 106.17503 * 180.17814 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.09009 * 109.47192 * 300.00127 * 1 2 3 22 22 H 1.08997 * 109.47311 * 60.00330 * 1 2 3 23 23 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46737 * 239.99818 * 2 1 3 25 25 H 1.09000 * 109.46848 * 119.99872 * 2 1 3 26 26 H 1.09004 * 109.47269 * 300.00069 * 5 3 2 27 27 H 1.08997 * 109.46855 * 60.00053 * 5 3 2 28 28 H 1.09000 * 109.46744 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47517 * 54.99863 * 6 3 2 30 30 H 1.08999 * 109.47139 * 294.99516 * 6 3 2 31 31 H 1.08000 * 126.91429 * 0.03609 * 8 7 6 32 32 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 33 33 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 7 4.0432 2.8238 -0.2459 8 6 4.9720 3.4123 0.5427 9 6 5.1066 4.6792 0.0857 10 6 6.0221 5.7432 0.6342 11 6 6.9045 6.2647 -0.4705 12 1 6.8114 5.8660 -1.4699 13 6 7.8265 7.2555 -0.2067 14 7 7.9396 7.7413 1.0101 15 14 8.9149 7.9074 -1.5777 16 1 8.2430 9.0538 -2.2405 17 1 10.2119 8.3550 -1.0096 18 1 9.1553 6.8318 -2.5729 19 7 4.2711 4.7994 -0.9521 20 7 3.6559 3.6827 -1.1228 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5489 2.1253 1.3969 27 1 2.0699 1.5876 2.1491 28 1 1.9982 3.1544 1.3070 29 1 3.8571 0.8800 -1.0114 30 1 4.0030 0.9836 0.7596 31 1 5.4983 2.9624 1.3715 32 1 6.6416 5.3178 1.4238 33 1 5.4267 6.5608 1.0402 34 1 8.5885 8.4381 1.1958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603194388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:50 Heat of formation + Delta-G solvation = 71.090941 kcal Electronic energy + Delta-G solvation = -14906.372147 eV Core-core repulsion = 12454.801383 eV Total energy + Delta-G solvation = -2451.570764 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.47398 -37.40294 -33.90764 -32.91012 -30.99537 -29.95537 -27.66362 -26.94565 -24.15383 -23.35224 -21.16353 -20.73537 -19.47026 -16.79904 -16.33788 -15.90519 -15.36200 -14.49471 -14.33204 -14.07890 -13.73735 -13.21826 -12.66355 -12.39969 -12.21715 -12.09203 -11.75394 -11.60359 -11.22026 -10.97539 -10.90243 -10.82682 -10.69486 -10.59178 -10.02766 -9.65734 -9.37444 -9.21830 -8.40400 -8.07874 -5.96429 -3.96714 2.29823 2.87453 3.38927 3.43739 3.47474 3.56616 4.35216 4.53014 4.53868 4.65221 4.88053 5.06868 5.18999 5.25251 5.32983 5.39133 5.40908 5.44283 5.68889 5.74013 5.79245 5.85483 5.90865 6.11128 6.14165 6.16280 6.40900 7.18337 7.26255 7.56480 7.66107 8.01593 8.40786 9.06849 9.37617 9.65951 11.14749 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.073574 B = 0.004995 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.475693 B = 5603.836420 C = 5744.104782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.116 4.116 3 C -0.105 4.105 4 H 0.089 0.911 5 C -0.149 4.149 6 C 0.124 3.876 7 N -0.300 5.300 8 C -0.083 4.083 9 C 0.033 3.967 10 C 0.092 3.908 11 C -0.502 4.502 12 H 0.059 0.941 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.287 1.287 18 H -0.275 1.275 19 N -0.264 5.264 20 N -0.109 5.109 21 H 0.057 0.943 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.179 0.821 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.041 -16.362 1.670 19.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.124 4.124 4 H 0.107 0.893 5 C -0.206 4.206 6 C 0.002 3.998 7 N -0.096 5.096 8 C -0.232 4.232 9 C -0.104 4.104 10 C 0.053 3.947 11 C -0.541 4.541 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.539 5.539 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.213 1.213 18 H -0.199 1.199 19 N -0.131 5.131 20 N -0.088 5.088 21 H 0.076 0.924 22 H 0.075 0.925 23 H 0.073 0.927 24 H 0.084 0.916 25 H 0.083 0.917 26 H 0.080 0.920 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.197 0.803 32 H 0.054 0.946 33 H 0.056 0.944 34 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -11.866 -15.999 0.567 19.927 hybrid contribution 1.385 0.009 0.279 1.413 sum -10.481 -15.989 0.845 19.137 Atomic orbital electron populations 1.21799 0.95352 1.01599 1.02277 1.21502 0.96523 0.95113 1.02263 1.21492 0.93149 0.97385 1.00419 0.89270 1.21872 1.01706 1.00945 0.96127 1.22014 0.95751 0.78015 1.04006 1.47142 1.28261 1.11988 1.22173 1.23348 1.00580 0.96085 1.03204 1.23004 0.98213 0.95396 0.93815 1.17717 0.91064 0.89849 0.96035 1.21061 1.17779 1.19856 0.95418 0.92307 1.24975 0.97399 0.96430 0.95638 1.69950 1.36147 1.28388 1.19386 0.86509 0.79660 0.79277 0.82086 1.20561 1.21309 1.19948 1.75070 1.08384 1.13341 1.16288 1.78142 1.22021 0.95213 1.13376 0.92352 0.92519 0.92695 0.91592 0.91658 0.91990 0.92571 0.92469 0.89139 0.88360 0.80344 0.94614 0.94372 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.67 37.16 0.36 -0.72 16 2 C -0.12 -0.85 5.40 -26.73 -0.14 -0.99 16 3 C -0.11 -1.05 2.43 -90.62 -0.22 -1.27 16 4 H 0.09 1.06 8.00 -51.93 -0.42 0.65 16 5 C -0.15 -1.57 8.84 37.16 0.33 -1.24 16 6 C 0.12 1.37 5.85 -4.04 -0.02 1.35 16 7 N -0.30 -5.04 2.89 -61.26 -0.18 -5.21 16 8 C -0.08 -1.55 11.49 -17.05 -0.20 -1.74 16 9 C 0.03 0.78 6.44 -82.78 -0.53 0.24 16 10 C 0.09 2.45 5.55 -29.03 -0.16 2.29 16 11 C -0.50 -14.73 9.09 -34.44 -0.31 -15.04 16 12 H 0.06 1.76 7.74 -52.49 -0.41 1.36 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.94 13.29 55.43 0.74 -26.20 16 15 Si 0.90 22.36 29.54 -169.99 -5.02 17.34 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 19 N -0.26 -6.42 12.40 33.29 0.41 -6.00 16 20 N -0.11 -2.25 12.82 60.35 0.77 -1.47 16 21 H 0.06 0.41 6.57 -51.92 -0.34 0.07 16 22 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 24 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 27 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.78 7.75 -51.93 -0.40 0.38 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 31 H 0.18 2.65 8.06 -52.49 -0.42 2.22 16 32 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 33 H 0.04 1.08 8.14 -51.93 -0.42 0.66 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -33.07 288.64 -5.19 -38.26 By element: Atomic # 1 Polarization: -0.20 SS G_CDS: -5.26 Total: -5.46 kcal Atomic # 6 Polarization: -14.59 SS G_CDS: -1.00 Total: -15.60 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 1.75 Total: -38.89 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.34 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -33.07 -5.19 -38.26 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603194388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.352 kcal (2) G-P(sol) polarization free energy of solvation -33.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds