Wall clock time and date at job start Sun Mar 29 2020 22:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.09002 * 109.46784 * 304.99799 * 3 2 1 5 5 C 1.52998 * 109.47335 * 64.99905 * 3 2 1 6 6 C 1.52998 * 109.46855 * 185.00270 * 3 2 1 7 7 N 1.46505 * 109.46658 * 174.99929 * 6 3 2 8 8 C 1.35310 * 125.86763 * 125.29510 * 7 6 3 9 9 C 1.35348 * 106.17503 * 180.17814 * 8 7 6 10 10 C 1.50700 * 126.75241 * 179.84708 * 9 8 7 11 11 C 1.50702 * 109.46869 * 124.71667 * 10 9 8 12 12 H 1.08002 * 120.00299 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99942 * 179.72213 * 11 10 9 14 14 N 1.31514 * 119.99698 * 0.28408 * 13 11 10 15 15 Si 1.86794 * 119.99837 * 180.27476 * 13 11 10 16 16 H 1.48501 * 109.47188 * 90.00793 * 15 13 11 17 17 H 1.48501 * 109.47085 * 210.00372 * 15 13 11 18 18 H 1.48498 * 109.47634 * 330.00608 * 15 13 11 19 19 N 1.33770 * 106.49624 * 359.59617 * 9 8 7 20 20 N 1.28632 * 108.88455 * 0.25241 * 19 9 8 21 21 H 1.09009 * 109.47192 * 300.00127 * 1 2 3 22 22 H 1.08997 * 109.47311 * 60.00330 * 1 2 3 23 23 H 1.09000 * 109.47337 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.46737 * 239.99818 * 2 1 3 25 25 H 1.09000 * 109.46848 * 119.99872 * 2 1 3 26 26 H 1.09004 * 109.47269 * 300.00069 * 5 3 2 27 27 H 1.08997 * 109.46855 * 60.00053 * 5 3 2 28 28 H 1.09000 * 109.46744 * 180.02562 * 5 3 2 29 29 H 1.09001 * 109.47517 * 54.99863 * 6 3 2 30 30 H 1.08999 * 109.47139 * 294.99516 * 6 3 2 31 31 H 1.08000 * 126.91429 * 0.03609 * 8 7 6 32 32 H 1.09004 * 109.47210 * 4.71960 * 10 9 8 33 33 H 1.08994 * 109.47551 * 244.71612 * 10 9 8 34 34 H 0.97005 * 119.99651 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 1.6353 2.1266 1.3073 6 6 3.5648 1.4443 -0.1258 7 7 4.0432 2.8238 -0.2459 8 6 4.9720 3.4123 0.5427 9 6 5.1066 4.6792 0.0857 10 6 6.0221 5.7432 0.6342 11 6 6.9045 6.2647 -0.4705 12 1 6.8114 5.8660 -1.4699 13 6 7.8265 7.2555 -0.2067 14 7 7.9396 7.7413 1.0101 15 14 8.9149 7.9074 -1.5777 16 1 8.2430 9.0538 -2.2405 17 1 10.2119 8.3550 -1.0096 18 1 9.1553 6.8318 -2.5729 19 7 4.2711 4.7994 -0.9521 20 7 3.6559 3.6827 -1.1228 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3634 -1.0276 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5489 2.1253 1.3969 27 1 2.0699 1.5876 2.1491 28 1 1.9982 3.1544 1.3070 29 1 3.8571 0.8800 -1.0114 30 1 4.0030 0.9836 0.7596 31 1 5.4983 2.9624 1.3715 32 1 6.6416 5.3178 1.4238 33 1 5.4267 6.5608 1.0402 34 1 8.5885 8.4381 1.1958 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603194388.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:32:49 Heat of formation + Delta-G solvation = 49.898442 kcal Electronic energy + Delta-G solvation = -14907.291122 eV Core-core repulsion = 12454.801383 eV Total energy + Delta-G solvation = -2452.489740 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.02598 -38.28130 -35.67761 -34.52652 -32.83989 -30.82388 -29.39595 -28.13716 -25.47924 -24.96834 -22.59657 -21.99098 -20.60468 -18.52376 -17.97561 -17.35240 -16.55984 -16.10806 -15.59268 -15.35562 -14.69556 -14.33992 -14.20539 -13.97553 -13.68474 -13.06149 -12.97631 -12.84927 -12.66480 -12.55612 -12.41152 -11.94176 -11.89756 -11.66439 -11.61540 -11.48880 -11.32724 -10.74016 -10.57963 -9.83047 -8.18683 -6.27415 0.81000 1.40180 1.42579 1.52981 1.65105 1.79531 2.44767 3.13979 3.48224 3.69717 3.78703 3.95901 4.16046 4.31640 4.36397 4.49913 4.53923 4.58293 4.65013 4.71639 4.88632 5.02577 5.08996 5.12826 5.21385 5.30196 5.40694 5.48428 5.49710 5.55496 5.77032 5.90400 6.23126 6.80859 7.39214 7.75612 8.92329 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.073574 B = 0.004995 C = 0.004873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.475693 B = 5603.836420 C = 5744.104782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.108 4.108 3 C -0.100 4.100 4 H 0.063 0.937 5 C -0.147 4.147 6 C 0.109 3.891 7 N -0.279 5.279 8 C -0.054 4.054 9 C -0.010 4.010 10 C 0.102 3.898 11 C -0.524 4.524 12 H 0.044 0.956 13 C 0.008 3.992 14 N -0.927 5.927 15 Si 0.963 3.037 16 H -0.276 1.276 17 H -0.273 1.273 18 H -0.271 1.271 19 N -0.313 5.313 20 N -0.119 5.119 21 H 0.056 0.944 22 H 0.046 0.954 23 H 0.068 0.932 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.018 0.982 29 H 0.110 0.890 30 H 0.137 0.863 31 H 0.222 0.778 32 H 0.034 0.966 33 H 0.006 0.994 34 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.787 -18.826 1.849 21.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.146 4.146 3 C -0.119 4.119 4 H 0.082 0.918 5 C -0.205 4.205 6 C -0.010 4.010 7 N -0.074 5.074 8 C -0.204 4.204 9 C -0.149 4.149 10 C 0.064 3.936 11 C -0.563 4.563 12 H 0.062 0.938 13 C -0.190 4.190 14 N -0.567 5.567 15 Si 0.788 3.212 16 H -0.202 1.202 17 H -0.198 1.198 18 H -0.196 1.196 19 N -0.180 5.180 20 N -0.098 5.098 21 H 0.075 0.925 22 H 0.065 0.935 23 H 0.087 0.913 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.037 0.963 29 H 0.128 0.872 30 H 0.155 0.845 31 H 0.239 0.761 32 H 0.052 0.948 33 H 0.024 0.976 34 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -11.643 -18.490 0.734 21.863 hybrid contribution 1.210 0.657 0.270 1.403 sum -10.432 -17.834 1.004 20.685 Atomic orbital electron populations 1.21820 0.95366 1.02318 1.01753 1.21469 0.96428 0.92949 1.03722 1.21451 0.92324 0.99073 0.99057 0.91801 1.21867 1.02364 0.98923 0.97299 1.22685 0.96586 0.74921 1.06852 1.47575 1.26489 1.13278 1.20073 1.23733 0.99410 0.94299 1.02952 1.22659 0.99677 0.96969 0.95568 1.17375 0.90898 0.90037 0.95324 1.21291 1.18847 1.20666 0.95467 0.93809 1.25802 0.98639 0.96440 0.98122 1.70043 1.36813 1.28778 1.21105 0.85484 0.78136 0.78544 0.79074 1.20194 1.19787 1.19578 1.74975 1.09786 1.15522 1.17670 1.78014 1.22107 0.95116 1.14563 0.92519 0.93510 0.91342 0.90573 0.89712 0.91237 0.90491 0.96257 0.87163 0.84504 0.76118 0.94792 0.97593 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.81 9.67 71.98 0.70 -1.11 16 2 C -0.11 -1.19 5.40 30.60 0.17 -1.03 16 3 C -0.10 -1.75 2.43 -10.79 -0.03 -1.78 16 4 H 0.06 1.47 8.00 -2.39 -0.02 1.45 16 5 C -0.15 -2.83 8.84 71.98 0.64 -2.19 16 6 C 0.11 2.02 5.85 86.38 0.50 2.52 16 7 N -0.28 -8.88 2.89 -347.73 -1.01 -9.88 16 8 C -0.05 -1.90 11.49 83.49 0.96 -0.94 16 9 C -0.01 -0.49 6.44 41.60 0.27 -0.22 16 10 C 0.10 5.65 5.55 29.10 0.16 5.81 16 11 C -0.52 -31.59 9.09 25.60 0.23 -31.36 16 12 H 0.04 2.71 7.74 -2.91 -0.02 2.68 16 13 C 0.01 0.48 5.46 84.66 0.46 0.94 16 14 N -0.93 -56.26 13.29 21.45 0.28 -55.98 16 15 Si 0.96 46.18 29.54 68.60 2.03 48.21 16 16 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 17 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -12.75 7.11 99.48 0.71 -12.04 16 19 N -0.31 -15.68 12.40 -48.60 -0.60 -16.29 16 20 N -0.12 -4.94 12.82 37.02 0.47 -4.46 16 21 H 0.06 0.68 6.57 -2.38 -0.02 0.66 16 22 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 23 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 24 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 1.21 6.57 -2.38 -0.02 1.19 16 27 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.02 0.50 7.75 -2.39 -0.02 0.48 16 29 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.14 1.58 8.07 -2.39 -0.02 1.56 16 31 H 0.22 5.73 8.06 -2.91 -0.02 5.70 16 32 H 0.03 1.83 8.12 -2.38 -0.02 1.81 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.27 15.10 8.31 -92.70 -0.77 14.33 16 Total: -1.00 -74.48 288.64 6.30 -68.19 By element: Atomic # 1 Polarization: -1.49 SS G_CDS: 1.06 Total: -0.43 kcal Atomic # 6 Polarization: -33.41 SS G_CDS: 4.06 Total: -29.35 kcal Atomic # 7 Polarization: -85.76 SS G_CDS: -0.85 Total: -86.61 kcal Atomic # 14 Polarization: 46.18 SS G_CDS: 2.03 Total: 48.21 kcal Total: -74.48 6.30 -68.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603194388.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.084 kcal (2) G-P(sol) polarization free energy of solvation -74.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds