Wall clock time and date at job start Sun Mar 29 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.52999 * 109.46742 * 170.00407 * 14 12 2 16 16 N 1.46495 * 109.46923 * 179.97438 * 15 14 12 17 17 C 1.34949 * 126.03919 * 124.99932 * 16 15 14 18 18 C 1.35316 * 107.75188 * 179.97438 * 17 16 15 19 19 C 1.39879 * 107.91433 * 0.02562 * 18 17 16 20 20 N 1.30830 * 108.20416 * 359.73735 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 26 26 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 27 27 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 28 28 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 29 29 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 30 30 H 1.09005 * 109.47332 * 299.99747 * 15 14 12 31 31 H 1.08998 * 109.47160 * 60.00136 * 15 14 12 32 32 H 1.08006 * 126.12556 * 359.95397 * 17 16 15 33 33 H 1.07992 * 126.04477 * 179.97438 * 18 17 16 34 34 H 1.07998 * 125.89133 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4884 -0.5255 -3.5973 16 7 2.2219 0.2618 -4.8037 17 6 3.1503 0.8086 -5.6161 18 6 2.4991 1.4518 -6.6127 19 6 1.1255 1.2931 -6.4018 20 7 0.9582 0.5755 -5.3207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 0.3491 -1.9548 -1.3694 26 1 1.8140 -2.5260 -2.2042 27 1 1.7059 -2.6220 -0.4303 28 1 0.6814 0.1054 -2.6087 29 1 2.1025 1.1190 -2.2604 30 1 3.5600 -0.5335 -3.3977 31 1 2.1388 -1.5471 -3.7460 32 1 4.2214 0.7446 -5.4928 33 1 2.9586 1.9928 -7.4266 34 1 0.3389 1.6901 -7.0264 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:08 Heat of formation + Delta-G solvation = 87.768642 kcal Electronic energy + Delta-G solvation = -15200.522932 eV Core-core repulsion = 12749.675367 eV Total energy + Delta-G solvation = -2450.847565 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.96928 -37.47318 -33.80635 -32.34327 -30.09091 -29.13603 -27.54990 -25.29352 -25.24211 -22.38924 -20.95859 -20.30878 -19.13639 -17.13491 -16.20130 -15.33781 -14.99921 -14.52152 -14.26690 -13.72071 -13.48736 -13.28872 -12.76436 -12.61131 -12.20919 -11.80076 -11.43767 -11.09793 -10.89132 -10.75013 -10.69295 -10.56678 -10.29239 -10.06337 -9.91404 -9.28725 -8.93230 -8.46054 -8.40433 -7.26591 -6.02672 -4.06932 2.04283 2.67570 2.94980 3.30130 3.36542 3.39608 4.38769 4.63844 4.92112 5.11440 5.21857 5.28836 5.33443 5.56690 5.67357 5.83900 6.03548 6.07130 6.14737 6.31682 6.40310 6.62486 6.75876 6.81285 6.86523 7.09181 7.14345 7.41821 7.67906 7.79443 7.84691 8.06727 8.31960 8.52674 8.98544 9.58113 11.04510 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.058913 B = 0.005495 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.160943 B = 5094.011351 C = 5194.249695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.212 3.788 3 H 0.038 0.962 4 C -0.500 4.500 5 H 0.063 0.937 6 C 0.058 3.942 7 N -0.894 5.894 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.274 1.274 12 N -0.534 5.534 13 C 0.029 3.971 14 C 0.046 3.954 15 C 0.133 3.867 16 N -0.362 5.362 17 C 0.054 3.946 18 C -0.284 4.284 19 C 0.035 3.965 20 N -0.294 5.294 21 H 0.088 0.912 22 H 0.032 0.968 23 H 0.007 0.993 24 H 0.260 0.740 25 H 0.022 0.978 26 H 0.042 0.958 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.172 0.828 33 H 0.143 0.857 34 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.040 -0.933 -13.806 14.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.106 3.894 3 H 0.056 0.944 4 C -0.538 4.538 5 H 0.081 0.919 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 N -0.258 5.258 13 C -0.119 4.119 14 C -0.084 4.084 15 C 0.012 3.988 16 N -0.144 5.144 17 C -0.093 4.093 18 C -0.314 4.314 19 C -0.151 4.151 20 N -0.115 5.115 21 H 0.107 0.893 22 H 0.051 0.949 23 H 0.026 0.974 24 H 0.070 0.930 25 H 0.041 0.959 26 H 0.060 0.940 27 H 0.093 0.907 28 H 0.060 0.940 29 H 0.088 0.912 30 H 0.120 0.880 31 H 0.101 0.899 32 H 0.189 0.811 33 H 0.161 0.839 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 2.657 -1.503 -12.672 13.034 hybrid contribution 0.011 0.146 0.215 0.260 sum 2.668 -1.357 -12.457 12.812 Atomic orbital electron populations 1.22399 1.00649 0.99504 1.00600 1.19317 0.89944 0.94414 0.85683 0.94404 1.21080 1.30647 1.12556 0.89533 0.91898 1.24939 0.95198 0.95154 0.99046 1.69888 1.36959 1.23064 1.23457 0.86497 0.78494 0.79963 0.82436 1.20687 1.21365 1.19932 1.62366 1.58936 1.02550 1.01939 1.22322 0.96957 0.91804 1.00861 1.22187 0.98339 0.97857 0.89974 1.21904 1.02084 0.93973 0.80835 1.48887 1.03656 1.40891 1.21005 1.22599 0.96428 0.97749 0.92563 1.21454 0.93551 1.12064 1.04311 1.23846 0.96956 0.98542 0.95722 1.77383 1.02169 1.19434 1.12564 0.89293 0.94869 0.97391 0.92964 0.95910 0.93966 0.90678 0.94020 0.91217 0.87988 0.89904 0.81105 0.83901 0.80426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.24 8.22 37.16 0.31 -3.94 16 2 C 0.21 5.34 2.31 -68.86 -0.16 5.18 16 3 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 4 C -0.50 -13.53 7.97 -34.44 -0.27 -13.80 16 5 H 0.06 1.70 7.10 -52.49 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.89 -25.48 11.32 55.43 0.63 -24.86 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.53 -11.22 4.70 -236.29 -1.11 -12.33 16 13 C 0.03 0.56 8.62 60.06 0.52 1.07 16 14 C 0.05 0.85 4.72 -3.82 -0.02 0.83 16 15 C 0.13 1.98 6.44 -4.05 -0.03 1.95 16 16 N -0.36 -5.41 3.68 -61.37 -0.23 -5.64 16 17 C 0.05 0.66 11.45 -17.22 -0.20 0.46 16 18 C -0.28 -3.34 10.80 -40.01 -0.43 -3.77 16 19 C 0.04 0.46 12.03 -17.36 -0.21 0.25 16 20 N -0.29 -4.78 12.42 30.62 0.38 -4.40 16 21 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 22 H 0.03 0.79 6.33 -51.93 -0.33 0.46 16 23 H 0.01 0.17 6.91 -51.93 -0.36 -0.19 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.02 0.44 6.21 -51.93 -0.32 0.12 16 26 H 0.04 0.67 6.30 -51.93 -0.33 0.35 16 27 H 0.07 1.52 6.86 -51.93 -0.36 1.17 16 28 H 0.04 0.84 7.06 -51.93 -0.37 0.47 16 29 H 0.07 1.36 7.93 -51.93 -0.41 0.95 16 30 H 0.10 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.08 1.19 6.47 -51.93 -0.34 0.86 16 32 H 0.17 1.49 8.06 -52.48 -0.42 1.07 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 34 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 276.56 15.07 4.17 4.17 Total: -1.00 -30.06 276.56 -6.50 -36.56 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -4.73 Total: 0.60 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -0.59 Total: -10.28 kcal Atomic # 7 Polarization: -46.89 SS G_CDS: -0.33 Total: -47.22 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.06 -6.50 -36.56 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.326 kcal (2) G-P(sol) polarization free energy of solvation -30.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.557 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds