Wall clock time and date at job start Sun Mar 29 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31508 * 119.99915 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99777 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47155 * 89.99872 * 8 6 4 10 10 H 1.48495 * 109.46964 * 209.99990 * 8 6 4 11 11 H 1.48499 * 109.46909 * 330.00049 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.52999 * 109.46742 * 170.00407 * 14 12 2 16 16 N 1.46495 * 109.46923 * 179.97438 * 15 14 12 17 17 C 1.34949 * 126.03919 * 124.99932 * 16 15 14 18 18 C 1.35316 * 107.75188 * 179.97438 * 17 16 15 19 19 C 1.39879 * 107.91433 * 0.02562 * 18 17 16 20 20 N 1.30830 * 108.20416 * 359.73735 * 19 18 17 21 21 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 24 24 H 0.97001 * 119.99839 * 180.02562 * 7 6 4 25 25 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 26 26 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 27 27 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 28 28 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 29 29 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 30 30 H 1.09005 * 109.47332 * 299.99747 * 15 14 12 31 31 H 1.08998 * 109.47160 * 60.00136 * 15 14 12 32 32 H 1.08006 * 126.12556 * 359.95397 * 17 16 15 33 33 H 1.07992 * 126.04477 * 179.97438 * 18 17 16 34 34 H 1.07998 * 125.89133 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3215 -1.1204 4.0079 9 1 3.6298 -0.5460 4.4123 10 1 1.3433 -0.9494 5.1119 11 1 2.4860 -2.5663 3.7118 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4884 -0.5255 -3.5973 16 7 2.2219 0.2618 -4.8037 17 6 3.1503 0.8086 -5.6161 18 6 2.4991 1.4518 -6.6127 19 6 1.1255 1.2931 -6.4018 20 7 0.9582 0.5755 -5.3207 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 0.7096 1.1617 3.4844 25 1 0.3491 -1.9548 -1.3694 26 1 1.8140 -2.5260 -2.2042 27 1 1.7059 -2.6220 -0.4303 28 1 0.6814 0.1054 -2.6087 29 1 2.1025 1.1190 -2.2604 30 1 3.5600 -0.5335 -3.3977 31 1 2.1388 -1.5471 -3.7460 32 1 4.2214 0.7446 -5.4928 33 1 2.9586 1.9928 -7.4266 34 1 0.3389 1.6901 -7.0264 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095405.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:33:08 Heat of formation + Delta-G solvation = 67.739672 kcal Electronic energy + Delta-G solvation = -15201.391453 eV Core-core repulsion = 12749.675367 eV Total energy + Delta-G solvation = -2451.716086 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.96960 -39.17810 -35.40112 -33.99752 -31.28563 -30.67700 -29.02070 -27.32763 -26.79890 -23.90337 -21.93153 -21.54535 -20.83544 -18.31076 -18.16914 -16.86251 -16.52624 -16.09819 -15.70063 -15.06811 -14.94536 -14.69802 -14.12465 -13.91572 -13.62926 -13.34310 -13.17898 -12.78384 -12.69692 -12.60192 -12.43326 -12.10939 -12.00503 -11.75598 -11.48139 -10.98521 -10.50945 -10.35244 -9.46253 -9.00087 -8.11775 -6.23494 1.05618 1.44336 1.44463 1.55037 1.64476 2.02195 2.43165 3.17714 3.28883 3.77210 3.90424 4.11069 4.22568 4.33884 4.52165 4.57330 4.68264 4.73659 4.78977 4.85299 4.92258 4.97055 5.09420 5.16940 5.20744 5.46187 5.65425 5.73506 5.81965 6.12767 6.20814 6.38868 6.61660 6.84865 6.89074 7.45954 8.94875 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.058913 B = 0.005495 C = 0.005389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 475.160943 B = 5094.011351 C = 5194.249695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.216 3.784 3 H 0.003 0.997 4 C -0.512 4.512 5 H 0.063 0.937 6 C 0.009 3.991 7 N -0.924 5.924 8 Si 0.964 3.036 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.265 1.265 12 N -0.535 5.535 13 C 0.033 3.967 14 C 0.056 3.944 15 C 0.145 3.855 16 N -0.380 5.380 17 C 0.052 3.948 18 C -0.285 4.285 19 C 0.033 3.967 20 N -0.348 5.348 21 H 0.062 0.938 22 H 0.036 0.964 23 H 0.014 0.986 24 H 0.261 0.739 25 H 0.014 0.986 26 H 0.079 0.921 27 H 0.062 0.938 28 H 0.021 0.979 29 H 0.052 0.948 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.206 0.794 33 H 0.173 0.827 34 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.342 -1.749 -14.965 15.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.109 3.891 3 H 0.021 0.979 4 C -0.551 4.551 5 H 0.081 0.919 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.789 3.211 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.190 1.190 12 N -0.259 5.259 13 C -0.115 4.115 14 C -0.073 4.073 15 C 0.024 3.976 16 N -0.163 5.163 17 C -0.094 4.094 18 C -0.315 4.315 19 C -0.152 4.152 20 N -0.170 5.170 21 H 0.081 0.919 22 H 0.055 0.945 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.033 0.967 26 H 0.098 0.902 27 H 0.081 0.919 28 H 0.040 0.960 29 H 0.070 0.930 30 H 0.142 0.858 31 H 0.107 0.893 32 H 0.223 0.777 33 H 0.190 0.810 34 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 3.967 -2.324 -13.861 14.604 hybrid contribution -0.398 0.465 0.464 0.768 sum 3.569 -1.859 -13.397 13.988 Atomic orbital electron populations 1.22203 1.00568 0.99334 0.99568 1.19075 0.89867 0.92861 0.87346 0.97929 1.21348 1.30643 1.12593 0.90501 0.91925 1.25753 0.95333 0.95811 1.02069 1.70028 1.37953 1.24371 1.24075 0.85469 0.77874 0.79151 0.78600 1.20205 1.21211 1.18984 1.62256 1.58811 1.03293 1.01546 1.22335 0.96499 0.90631 1.02081 1.22080 0.97667 0.97126 0.90462 1.21714 1.02658 0.93768 0.79451 1.48883 1.03979 1.42004 1.21418 1.23289 0.97758 0.96532 0.91823 1.21879 0.92945 1.11727 1.04909 1.24441 0.98640 0.97242 0.94925 1.77335 1.03572 1.21679 1.14423 0.91946 0.94459 0.96661 0.92983 0.96716 0.90236 0.91906 0.96029 0.92960 0.85751 0.89296 0.77716 0.80999 0.77919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.94 8.22 71.98 0.59 -7.35 16 2 C 0.22 11.08 2.31 44.17 0.10 11.18 16 3 H 0.00 0.16 7.93 -2.39 -0.02 0.14 16 4 C -0.51 -27.95 7.97 25.60 0.20 -27.75 16 5 H 0.06 3.35 7.10 -2.91 -0.02 3.33 16 6 C 0.01 0.47 5.30 84.66 0.45 0.92 16 7 N -0.92 -53.63 11.32 21.45 0.24 -53.39 16 8 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 9 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 10 H -0.29 -12.74 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 12 N -0.54 -22.41 4.70 -901.48 -4.24 -26.65 16 13 C 0.03 1.21 8.62 127.69 1.10 2.31 16 14 C 0.06 2.07 4.72 86.30 0.41 2.48 16 15 C 0.15 4.07 6.44 86.38 0.56 4.63 16 16 N -0.38 -10.77 3.68 -348.06 -1.28 -12.05 16 17 C 0.05 1.13 11.45 83.54 0.96 2.09 16 18 C -0.29 -5.90 10.80 21.99 0.24 -5.66 16 19 C 0.03 0.80 12.03 85.24 1.03 1.83 16 20 N -0.35 -11.05 12.42 -57.02 -0.71 -11.76 16 21 H 0.06 3.49 6.07 -2.39 -0.01 3.47 16 22 H 0.04 1.79 6.33 -2.39 -0.02 1.78 16 23 H 0.01 0.70 6.91 -2.38 -0.02 0.68 16 24 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 25 H 0.01 0.56 6.21 -2.39 -0.01 0.54 16 26 H 0.08 2.35 6.30 -2.39 -0.02 2.34 16 27 H 0.06 2.48 6.86 -2.39 -0.02 2.47 16 28 H 0.02 0.88 7.06 -2.39 -0.02 0.86 16 29 H 0.05 2.09 7.93 -2.39 -0.02 2.07 16 30 H 0.12 2.90 8.07 -2.38 -0.02 2.88 16 31 H 0.09 2.36 6.47 -2.39 -0.02 2.35 16 32 H 0.21 2.79 8.06 -2.91 -0.02 2.76 16 33 H 0.17 2.44 8.06 -2.91 -0.02 2.41 16 34 H 0.20 3.55 8.06 -2.91 -0.02 3.52 16 Total: -1.00 -65.53 276.56 2.75 -62.78 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 1.08 Total: 10.98 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.63 Total: -15.32 kcal Atomic # 7 Polarization: -97.87 SS G_CDS: -5.98 Total: -103.85 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -65.53 2.75 -62.78 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095405.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.518 kcal (2) G-P(sol) polarization free energy of solvation -65.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds