Wall clock time and date at job start Sun Mar 29 2020 22:39:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.45718 * 2 1 4 4 C 1.53032 * 109.46190 * 240.02412 * 2 1 3 5 5 C 1.53126 * 109.27854 * 180.80814 * 4 2 1 6 6 C 1.53115 * 109.15866 * 57.65816 * 5 4 2 7 7 C 1.53035 * 109.27968 * 302.34527 * 6 5 4 8 8 N 1.46851 * 109.45721 * 119.97577 * 2 1 3 9 9 C 1.46893 * 111.00290 * 305.85221 * 8 2 1 10 10 C 1.53002 * 109.47156 * 322.60977 * 9 8 2 11 11 C 1.50698 * 115.55215 * 184.33767 * 10 9 8 12 12 H 1.07997 * 120.00237 * 215.47004 * 11 10 9 13 13 C 1.37880 * 120.00061 * 35.75291 * 11 10 9 14 14 N 1.31522 * 119.99577 * 8.97493 * 13 11 10 15 15 Si 1.86796 * 120.00337 * 188.97785 * 13 11 10 16 16 H 1.48500 * 109.47237 * 59.99563 * 15 13 11 17 17 H 1.48501 * 109.47251 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.46859 * 299.99935 * 15 13 11 19 19 C 1.53002 * 117.49701 * 330.00819 * 10 9 8 20 20 C 1.53001 * 117.49783 * 38.66237 * 10 9 8 21 21 H 1.08994 * 109.47531 * 300.02675 * 1 2 3 22 22 H 1.09007 * 109.46795 * 60.02464 * 1 2 3 23 23 H 1.09003 * 109.47762 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.50705 * 60.87202 * 4 2 1 25 25 H 1.08996 * 109.54155 * 300.76751 * 4 2 1 26 26 H 1.08997 * 109.51753 * 297.75110 * 5 4 2 27 27 H 1.09001 * 109.52592 * 177.56093 * 5 4 2 28 28 H 1.09001 * 109.50125 * 182.40863 * 6 5 4 29 29 H 1.08995 * 109.53982 * 62.30484 * 6 5 4 30 30 H 1.09007 * 109.46426 * 299.16942 * 7 6 5 31 31 H 1.09003 * 109.46955 * 179.19636 * 7 6 5 32 32 H 1.08992 * 109.47388 * 202.60783 * 9 8 2 33 33 H 1.09006 * 109.47121 * 82.59994 * 9 8 2 34 34 H 0.97005 * 119.99700 * 184.99475 * 14 13 11 35 35 H 1.09000 * 117.50105 * 215.00866 * 19 10 9 36 36 H 1.09001 * 117.49872 * 0.02562 * 19 10 9 37 37 H 1.08998 * 117.50206 * 359.97438 * 20 10 9 38 38 H 1.09004 * 117.49315 * 145.00313 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2499 5 6 3.5710 -0.7362 -1.2355 6 6 4.0547 -1.4190 0.0468 7 6 3.4864 -0.6779 1.2591 8 7 2.0191 -0.6918 1.1994 9 6 1.4372 -0.1107 2.4166 10 6 1.3213 1.4061 2.2525 11 6 0.8329 2.1556 3.4652 12 1 0.2000 3.0225 3.3456 13 6 1.1989 1.7382 4.7273 14 7 2.1103 0.8009 4.8713 15 14 0.4003 2.5037 6.2325 16 1 -1.0655 2.2697 6.1881 17 1 0.9629 1.8853 7.4598 18 1 0.6681 3.9643 6.2460 19 6 2.3519 2.1009 1.3602 20 6 0.9079 1.9385 0.8790 21 1 -0.3634 0.5142 0.8897 22 1 -0.3633 0.5135 -0.8903 23 1 -0.3635 -1.0276 0.0005 24 1 1.6896 -0.1982 -2.1399 25 1 1.6659 -1.7447 -1.2583 26 1 3.9456 0.2869 -1.2671 27 1 3.9380 -1.2864 -2.1019 28 1 5.1438 -1.3949 0.0833 29 1 3.7129 -2.4539 0.0599 30 1 3.8402 0.3531 1.2533 31 1 3.8173 -1.1701 2.1737 32 1 2.0779 -0.3360 3.2690 33 1 0.4470 -0.5346 2.5840 34 1 2.3158 0.4559 5.7544 35 1 2.6767 3.1001 1.6503 36 1 3.1121 1.4773 0.8897 37 1 0.7189 1.2083 0.0921 38 1 0.2827 2.8310 0.8526 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083862240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:39:06 Heat of formation + Delta-G solvation = 153.428562 kcal Electronic energy + Delta-G solvation = -16976.685121 eV Core-core repulsion = 14632.225128 eV Total energy + Delta-G solvation = -2344.459993 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.91382 -37.22243 -34.99865 -33.70792 -33.00754 -29.09321 -27.91724 -26.82699 -23.86412 -22.44888 -22.24395 -21.35252 -20.34180 -18.21466 -16.81396 -16.71287 -16.07194 -15.98441 -15.15295 -14.83561 -14.71459 -13.77213 -13.71007 -13.40222 -13.33632 -12.87119 -12.81016 -12.65225 -12.54284 -12.44054 -12.21929 -11.97013 -11.56034 -11.35687 -11.16604 -11.15635 -10.86473 -10.20752 -10.12226 -9.87038 -8.60468 -8.03323 -6.24589 1.37787 1.39311 1.47655 2.37833 2.94697 3.24205 3.64275 3.94814 4.00574 4.11167 4.11899 4.39818 4.51426 4.55292 4.61845 4.69495 4.76798 4.82176 4.87090 4.98573 5.04478 5.11598 5.15722 5.19627 5.23193 5.33467 5.34741 5.39164 5.46684 5.53987 5.62860 5.63275 5.73955 6.06991 6.30539 6.48863 6.64288 6.85777 7.38837 8.86556 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.042683 B = 0.009370 C = 0.008573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.843571 B = 2987.546927 C = 3265.257776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.003 4.003 3 H 0.114 0.886 4 C -0.112 4.112 5 C -0.118 4.118 6 C -0.109 4.109 7 C 0.046 3.954 8 N -0.531 5.531 9 C 0.092 3.908 10 C 0.006 3.994 11 C -0.517 4.517 12 H 0.041 0.959 13 C 0.026 3.974 14 N -0.899 5.899 15 Si 0.955 3.045 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.278 1.278 19 C -0.239 4.239 20 C -0.296 4.296 21 H 0.060 0.940 22 H 0.088 0.912 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.052 0.948 32 H 0.101 0.899 33 H 0.034 0.966 34 H 0.264 0.736 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.227 0.773 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.316 -4.288 -10.659 11.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.110 4.110 3 H 0.131 0.869 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.147 4.147 7 C -0.082 4.082 8 N -0.255 5.255 9 C -0.036 4.036 10 C 0.004 3.996 11 C -0.555 4.555 12 H 0.060 0.940 13 C -0.174 4.174 14 N -0.537 5.537 15 Si 0.780 3.220 16 H -0.196 1.196 17 H -0.203 1.203 18 H -0.203 1.203 19 C -0.276 4.276 20 C -0.330 4.330 21 H 0.079 0.921 22 H 0.106 0.894 23 H 0.076 0.924 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.072 0.928 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.119 0.881 33 H 0.052 0.948 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.122 0.878 37 H 0.241 0.759 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 1.312 -4.845 -10.519 11.656 hybrid contribution -0.120 1.675 1.534 2.274 sum 1.192 -3.171 -8.985 9.602 Atomic orbital electron populations 1.22080 0.94409 1.01842 1.03051 1.23963 0.94980 1.00814 0.91196 0.86917 1.21739 0.95770 1.00998 0.96458 1.21569 0.95716 1.00525 0.97698 1.21573 0.99905 0.99641 0.93569 1.22297 0.88396 0.98663 0.98830 1.62315 1.06644 1.54283 1.02278 1.21721 0.98853 0.90308 0.92670 1.19805 0.97499 0.93588 0.88694 1.20886 1.30175 1.12920 0.91517 0.94041 1.25658 0.94354 0.96064 1.01330 1.69863 1.30313 1.29728 1.23749 0.85674 0.79049 0.78461 0.78815 1.19624 1.20275 1.20325 1.23704 0.93336 1.01072 1.09472 1.27410 0.95045 1.05545 1.04977 0.92119 0.89381 0.92402 0.90070 0.91824 0.92753 0.89838 0.90674 0.91437 0.95178 0.92946 0.88137 0.94802 0.92654 0.93687 0.87811 0.75893 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.10 7.00 71.98 0.50 -4.59 16 2 C 0.00 -0.10 1.38 44.93 0.06 -0.03 16 3 H 0.11 4.19 2.42 -47.89 -0.12 4.07 16 4 C -0.11 -2.93 5.37 30.65 0.16 -2.76 16 5 C -0.12 -2.88 6.00 30.67 0.18 -2.69 16 6 C -0.11 -3.03 6.09 30.64 0.19 -2.85 16 7 C 0.05 1.71 5.10 86.32 0.44 2.15 16 8 N -0.53 -21.11 4.69 ******* -5.09 -26.19 16 9 C 0.09 4.50 4.63 86.31 0.40 4.90 16 10 C 0.01 0.30 2.03 -52.93 -0.11 0.19 16 11 C -0.52 -29.59 9.05 25.60 0.23 -29.36 16 12 H 0.04 2.40 7.83 -2.91 -0.02 2.38 16 13 C 0.03 1.45 5.27 84.65 0.45 1.89 16 14 N -0.90 -50.84 10.55 21.45 0.23 -50.61 16 15 Si 0.95 44.00 29.55 68.60 2.03 46.02 16 16 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 17 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 C -0.24 -11.24 8.56 30.62 0.26 -10.98 16 20 C -0.30 -12.88 6.69 30.62 0.20 -12.67 16 21 H 0.06 2.37 4.66 -2.39 -0.01 2.36 16 22 H 0.09 2.27 7.94 -2.38 -0.02 2.25 16 23 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 24 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 26 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.03 1.23 4.86 -2.38 -0.01 1.22 16 31 H 0.05 2.10 7.90 -2.39 -0.02 2.08 16 32 H 0.10 5.50 4.95 -2.39 -0.01 5.49 16 33 H 0.03 1.72 7.63 -2.38 -0.02 1.70 16 34 H 0.26 14.18 8.32 -92.70 -0.77 13.41 16 35 H 0.04 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.10 4.50 3.44 -2.39 -0.01 4.49 16 37 H 0.23 8.16 1.07 -149.24 -0.16 8.00 16 38 H 0.04 1.98 8.14 -2.38 -0.02 1.97 16 Total: -1.00 -60.26 267.60 0.92 -59.33 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.78 Total: 28.25 kcal Atomic # 6 Polarization: -59.78 SS G_CDS: 2.98 Total: -56.80 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -4.86 Total: -76.80 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Total: -60.26 0.92 -59.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083862240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.761 kcal (2) G-P(sol) polarization free energy of solvation -60.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 152.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.923 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds