Wall clock time and date at job start Sun Mar 29 2020 22:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 120.00115 * 2 1 4 4 C 1.52996 * 109.47027 * 94.99946 * 3 2 1 5 5 C 1.50700 * 120.00357 * 180.02562 * 2 1 3 6 6 N 1.46499 * 109.47116 * 94.99964 * 5 2 1 7 7 C 1.36947 * 119.99992 * 269.99894 * 6 5 2 8 8 H 1.07997 * 119.99692 * 141.90446 * 7 6 5 9 9 C 1.38807 * 119.99797 * 321.91360 * 7 6 5 10 10 N 1.31614 * 120.00469 * 338.80756 * 9 7 6 11 11 Si 1.86803 * 119.99666 * 158.81363 * 9 7 6 12 12 H 1.48500 * 109.47351 * 89.99974 * 11 9 7 13 13 H 1.48508 * 109.47168 * 209.99448 * 11 9 7 14 14 H 1.48500 * 109.47436 * 329.99433 * 11 9 7 15 15 C 1.46497 * 120.00150 * 90.00248 * 6 5 2 16 16 C 1.54275 * 110.03051 * 117.71554 * 15 6 5 17 17 C 1.54963 * 104.15884 * 95.75786 * 16 15 6 18 18 C 1.54886 * 102.77893 * 37.88459 * 17 16 15 19 19 C 1.53870 * 110.03439 * 234.93068 * 15 6 5 20 20 H 1.08001 * 120.00075 * 0.02562 * 1 2 3 21 21 H 1.08003 * 120.00039 * 180.02562 * 1 2 3 22 22 H 1.08996 * 109.47159 * 214.99917 * 3 2 1 23 23 H 1.08996 * 109.46474 * 335.00209 * 3 2 1 24 24 H 1.08998 * 109.47005 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.47405 * 300.00571 * 4 3 2 26 26 H 1.09001 * 109.47201 * 59.99827 * 4 3 2 27 27 H 1.09001 * 109.46709 * 335.00330 * 5 2 1 28 28 H 1.08993 * 109.47377 * 214.99996 * 5 2 1 29 29 H 0.97003 * 120.00377 * 175.06649 * 10 9 7 30 30 H 1.09001 * 110.01618 * 356.32448 * 15 6 5 31 31 H 1.09004 * 110.48375 * 214.40090 * 16 15 6 32 32 H 1.08999 * 110.48704 * 337.04579 * 16 15 6 33 33 H 1.08998 * 110.71694 * 279.56878 * 17 16 15 34 34 H 1.08996 * 110.92333 * 156.29519 * 17 16 15 35 35 H 1.09002 * 110.48587 * 203.40812 * 18 17 16 36 36 H 1.08998 * 110.59624 * 80.81823 * 18 17 16 37 37 H 1.09002 * 110.02919 * 359.95429 * 19 15 6 38 38 H 1.08997 * 110.03367 * 121.37719 * 19 15 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 2.4274 1.6839 1.4370 5 6 2.0635 -1.3051 -0.0006 6 7 2.4120 -1.6671 -1.3767 7 6 1.5517 -2.4271 -2.1235 8 1 1.4240 -2.2214 -3.1760 9 6 0.8437 -3.4617 -1.5276 10 7 1.2726 -3.9892 -0.4007 11 14 -0.7180 -4.1055 -2.3254 12 1 -0.3781 -5.2084 -3.2599 13 1 -1.6376 -4.6124 -1.2753 14 1 -1.3798 -3.0077 -3.0751 15 6 3.6807 -1.2163 -1.9539 16 6 4.5590 -2.4323 -2.3143 17 6 4.2739 -2.6734 -3.8183 18 6 4.1526 -1.2346 -4.3789 19 6 3.4220 -0.4553 -3.2660 20 1 -0.5400 0.9353 -0.0004 21 1 -0.5400 -0.9353 0.0004 22 1 2.9742 1.1989 -0.5894 23 1 1.4385 2.0854 -0.4343 24 1 2.9720 2.6281 1.4370 25 1 1.5167 1.7901 2.0265 26 1 3.0523 0.9036 1.8713 27 1 1.4386 -2.0856 0.4333 28 1 2.9742 -1.1991 0.5889 29 1 0.7413 -4.6622 0.0531 30 1 4.2049 -0.5736 -1.2466 31 1 5.6128 -2.2014 -2.1583 32 1 4.2668 -3.3019 -1.7256 33 1 3.3401 -3.2197 -3.9510 34 1 5.1004 -3.2038 -4.2911 35 1 3.5641 -1.2311 -5.2964 36 1 5.1397 -0.8085 -4.5581 37 1 2.3525 -0.4221 -3.4737 38 1 3.8205 0.5568 -3.1955 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085059129.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:38 Heat of formation + Delta-G solvation = 15.907997 kcal Electronic energy + Delta-G solvation = -16391.993254 eV Core-core repulsion = 14041.569921 eV Total energy + Delta-G solvation = -2350.423333 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -37.88630 -35.79650 -33.39752 -30.84698 -29.64376 -27.74464 -26.71243 -25.59868 -22.94506 -22.20996 -19.80325 -18.93951 -17.65734 -16.05315 -15.24175 -14.71441 -14.32733 -14.14006 -13.85873 -13.19534 -12.97060 -12.64522 -12.41082 -11.98977 -11.50169 -11.23555 -10.98919 -10.87934 -10.64992 -10.40554 -10.32928 -10.27002 -10.19567 -10.10188 -9.83140 -9.67867 -9.63408 -9.44316 -8.38326 -8.10603 -6.50239 -5.68817 -3.29645 3.22881 3.39280 3.47110 3.51047 4.55364 5.34460 5.45296 5.52216 5.54519 5.55285 5.63194 5.81741 5.94931 6.10493 6.19446 6.24659 6.30517 6.37032 6.39537 6.44810 6.54448 6.63039 6.66062 6.68626 6.76441 6.80451 6.90954 6.95775 7.18763 7.23711 7.40340 7.60454 7.71577 7.90020 7.99804 8.60860 9.26972 9.89922 10.48506 11.27483 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.017300 B = 0.014590 C = 0.009331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1618.081894 B = 1918.643041 C = 2999.965601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.142 4.142 5 C 0.175 3.825 6 N -0.569 5.569 7 C -0.237 4.237 8 H 0.059 0.941 9 C 0.012 3.988 10 N -0.886 5.886 11 Si 0.884 3.116 12 H -0.287 1.287 13 H -0.290 1.290 14 H -0.279 1.279 15 C 0.172 3.828 16 C -0.130 4.130 17 C -0.115 4.115 18 C -0.119 4.119 19 C -0.133 4.133 20 H 0.073 0.927 21 H 0.093 0.907 22 H 0.063 0.937 23 H 0.052 0.948 24 H 0.046 0.954 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.025 0.975 29 H 0.252 0.748 30 H 0.046 0.954 31 H 0.039 0.961 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.042 0.958 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.638 7.107 -0.814 8.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.124 4.124 3 C -0.123 4.123 4 C -0.199 4.199 5 C 0.050 3.950 6 N -0.288 5.288 7 C -0.367 4.367 8 H 0.077 0.923 9 C -0.188 4.188 10 N -0.528 5.528 11 Si 0.713 3.287 12 H -0.214 1.214 13 H -0.216 1.216 14 H -0.204 1.204 15 C 0.064 3.936 16 C -0.169 4.169 17 C -0.152 4.152 18 C -0.157 4.157 19 C -0.172 4.172 20 H 0.092 0.908 21 H 0.111 0.889 22 H 0.082 0.918 23 H 0.070 0.930 24 H 0.065 0.935 25 H 0.069 0.931 26 H 0.073 0.927 27 H 0.115 0.885 28 H 0.044 0.956 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.095 0.905 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.091 0.909 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.628 6.909 -0.733 7.838 hybrid contribution -0.977 -0.297 -0.464 1.122 sum 2.651 6.612 -1.198 7.224 Atomic orbital electron populations 1.23386 0.95602 1.00011 1.05309 1.22759 0.95860 0.97008 0.96748 1.20560 0.99994 0.95394 0.96389 1.21695 1.01003 1.00297 0.96918 1.20009 0.96633 0.91577 0.86798 1.43831 1.15673 1.57850 1.11408 1.18861 1.17701 1.06390 0.93710 0.92319 1.25062 1.00342 0.95287 0.98107 1.70065 1.36031 1.27662 1.19080 0.86612 0.84441 0.78819 0.78802 1.21438 1.21627 1.20431 1.21036 0.87236 0.92683 0.92604 1.22775 0.96974 1.00980 0.96172 1.22408 1.01005 0.95799 0.96034 1.22269 0.98801 0.96770 0.97861 1.22609 1.01158 0.97147 0.96311 0.90848 0.88867 0.91805 0.92955 0.93534 0.93130 0.92650 0.88462 0.95639 0.93832 0.93597 0.94269 0.90525 0.90538 0.93912 0.93137 0.93288 0.90883 0.93997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.13 13.88 29.02 0.40 -3.73 16 2 C -0.12 -2.45 4.89 -101.06 -0.49 -2.94 16 3 C -0.09 -1.45 6.10 -27.88 -0.17 -1.62 16 4 C -0.14 -2.05 9.89 37.16 0.37 -1.68 16 5 C 0.18 4.05 5.42 -5.19 -0.03 4.02 16 6 N -0.57 -13.49 2.30 -165.75 -0.38 -13.87 16 7 C -0.24 -6.15 7.32 -15.06 -0.11 -6.26 16 8 H 0.06 1.56 6.70 -52.49 -0.35 1.21 16 9 C 0.01 0.31 4.95 -17.43 -0.09 0.22 16 10 N -0.89 -24.84 11.49 55.49 0.64 -24.21 16 11 Si 0.88 21.43 29.61 -169.99 -5.03 16.40 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 14 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 15 C 0.17 3.56 3.36 -66.81 -0.22 3.34 16 16 C -0.13 -2.62 6.17 -25.03 -0.15 -2.77 16 17 C -0.11 -2.16 6.57 -24.70 -0.16 -2.32 16 18 C -0.12 -2.04 6.83 -25.08 -0.17 -2.21 16 19 C -0.13 -2.51 6.15 -25.62 -0.16 -2.67 16 20 H 0.07 1.31 7.99 -52.49 -0.42 0.89 16 21 H 0.09 2.06 7.99 -52.48 -0.42 1.64 16 22 H 0.06 1.10 7.50 -51.93 -0.39 0.71 16 23 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16 24 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.10 2.56 5.39 -51.93 -0.28 2.28 16 28 H 0.03 0.57 7.96 -51.93 -0.41 0.15 16 29 H 0.25 6.90 8.32 -40.82 -0.34 6.56 16 30 H 0.05 0.91 7.33 -51.93 -0.38 0.53 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.08 1.81 8.04 -51.93 -0.42 1.39 16 33 H 0.08 1.63 7.16 -51.93 -0.37 1.26 16 34 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.54 6.70 -51.93 -0.35 1.20 16 38 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 300.47 15.07 4.53 4.53 Total: -1.00 -26.80 300.47 -7.96 -34.77 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.72 Total: 1.01 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -0.99 Total: -18.62 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.26 Total: -38.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.03 Total: 16.40 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.80 -7.96 -34.77 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085059129.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.674 kcal (2) G-P(sol) polarization free energy of solvation -26.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.766 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds