Wall clock time and date at job start Sun Mar 29 2020 21:26:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47059 * 2 1 4 4 H 1.09001 * 109.47038 * 179.82353 * 3 2 1 5 5 C 1.50697 * 109.47060 * 299.82769 * 3 2 1 6 6 H 1.08000 * 120.00174 * 120.00139 * 5 3 2 7 7 C 1.37875 * 119.99982 * 299.99524 * 5 3 2 8 8 N 1.31510 * 120.00249 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00173 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46956 * 90.00367 * 9 7 5 11 11 H 1.48496 * 109.47426 * 210.00268 * 9 7 5 12 12 H 1.48498 * 109.47134 * 330.00574 * 9 7 5 13 13 N 1.46909 * 109.47291 * 59.82669 * 3 2 1 14 14 C 1.46899 * 110.99562 * 85.92764 * 13 3 2 15 15 C 1.50704 * 109.46488 * 175.54549 * 14 13 3 16 16 C 1.39871 * 125.89568 * 94.71741 * 15 14 13 17 17 C 1.35321 * 107.92005 * 179.86245 * 16 15 14 18 18 N 1.34957 * 107.74224 * 0.39497 * 17 16 15 19 19 C 1.46497 * 126.03546 * 179.75322 * 18 17 16 20 20 N 1.30840 * 125.89982 * 275.02343 * 15 14 13 21 21 H 1.09001 * 109.47026 * 175.59526 * 1 2 3 22 22 H 1.08992 * 109.47147 * 55.58766 * 1 2 3 23 23 H 1.09005 * 109.46940 * 295.58523 * 1 2 3 24 24 H 1.09003 * 109.46724 * 120.00103 * 2 1 3 25 25 H 1.08999 * 109.47203 * 239.99943 * 2 1 3 26 26 H 0.97002 * 120.00745 * 179.97438 * 8 7 5 27 27 H 1.00896 * 110.99633 * 209.88487 * 13 3 2 28 28 H 1.08995 * 109.47219 * 295.54380 * 14 13 3 29 29 H 1.08999 * 109.47280 * 55.55056 * 14 13 3 30 30 H 1.07998 * 126.04143 * 359.97438 * 16 15 14 31 31 H 1.07991 * 126.12981 * 180.14783 * 17 16 15 32 32 H 1.09006 * 109.46918 * 269.97295 * 19 18 17 33 33 H 1.09003 * 109.47341 * 29.97311 * 19 18 17 34 34 H 1.08994 * 109.47562 * 149.97368 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0032 5 6 1.5412 2.1516 -1.2326 6 1 0.9200 3.0298 -1.1362 7 6 1.8779 1.6793 -2.4834 8 7 2.6340 0.6098 -2.6009 9 14 1.2590 2.5579 -4.0113 10 1 2.2378 3.5996 -4.4140 11 1 1.0974 1.5775 -5.1148 12 1 -0.0502 3.1952 -3.7197 13 7 1.5469 2.1362 1.1974 14 6 2.4393 1.9095 2.3420 15 6 1.9631 2.7219 3.5187 16 6 1.1270 2.2681 4.5440 17 6 0.9355 3.2912 5.4087 18 7 1.6189 4.3574 4.9421 19 6 1.6833 5.6807 5.5673 20 7 2.2559 3.9751 3.7545 21 1 -0.3633 -1.0246 -0.0789 22 1 -0.3633 0.5807 -0.8477 23 1 -0.3633 0.4438 0.9269 24 1 1.8933 -0.5139 0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 2.8706 0.2772 -3.4809 27 1 1.4287 3.1226 1.0208 28 1 2.4322 0.8515 2.6043 29 1 3.4527 2.2117 2.0782 30 1 0.7097 1.2758 4.6314 31 1 0.3392 3.2613 6.3085 32 1 0.8741 6.3030 5.1847 33 1 1.5825 5.5774 6.6477 34 1 2.6408 6.1464 5.3346 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124746634.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:23 Heat of formation + Delta-G solvation = 74.342368 kcal Electronic energy + Delta-G solvation = -15100.026364 eV Core-core repulsion = 12648.596592 eV Total energy + Delta-G solvation = -2451.429772 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.87319 -36.27319 -33.68233 -32.08027 -30.57805 -29.75754 -27.61912 -25.85861 -23.82799 -22.96374 -20.90218 -19.47628 -18.88349 -16.92064 -16.14476 -15.31429 -14.82742 -14.21418 -14.06305 -13.58527 -13.49857 -13.02188 -12.60636 -12.44449 -12.17158 -12.02832 -11.56188 -11.25439 -10.88155 -10.72158 -10.34161 -10.32759 -10.03664 -9.64738 -9.31951 -9.02293 -8.70594 -8.40775 -8.31188 -7.15452 -5.96215 -4.01100 2.09794 2.70042 3.10094 3.33575 3.40185 3.44350 4.45858 4.60058 4.92693 5.08672 5.19947 5.33150 5.34899 5.62982 5.70764 5.99946 6.17668 6.30014 6.44701 6.61619 6.75652 6.93152 6.94768 7.20258 7.31267 7.37756 7.56409 7.81962 7.85761 7.91116 8.01319 8.33759 8.45990 8.73205 9.07979 9.63211 11.09761 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038619 B = 0.006217 C = 0.005723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 724.854186 B = 4502.619502 C = 4891.486806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.002 0.998 5 C -0.510 4.510 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 N -0.677 5.677 14 C 0.138 3.862 15 C 0.092 3.908 16 C -0.253 4.253 17 C 0.040 3.960 18 N -0.386 5.386 19 C 0.106 3.894 20 N -0.296 5.296 21 H 0.013 0.987 22 H 0.055 0.945 23 H 0.042 0.958 24 H 0.011 0.989 25 H 0.087 0.913 26 H 0.260 0.740 27 H 0.333 0.667 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.146 0.854 31 H 0.169 0.831 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 4.845 14.732 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.020 0.980 5 C -0.549 4.549 6 H 0.076 0.924 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.209 1.209 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.309 5.309 14 C 0.006 3.994 15 C -0.074 4.074 16 C -0.282 4.282 17 C -0.105 4.105 18 N -0.168 5.168 19 C -0.036 4.036 20 N -0.119 5.119 21 H 0.032 0.968 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.029 0.971 25 H 0.105 0.895 26 H 0.070 0.930 27 H 0.151 0.849 28 H 0.100 0.900 29 H 0.052 0.948 30 H 0.164 0.836 31 H 0.186 0.814 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.165 5.393 14.441 15.566 hybrid contribution -0.089 0.342 -0.683 0.769 sum -2.254 5.735 13.758 15.075 Atomic orbital electron populations 1.21451 0.97537 0.97343 1.01387 1.21436 0.95038 0.98163 0.99491 1.19181 0.93069 0.91516 0.85467 0.98023 1.21182 1.31507 1.11877 0.90319 0.92353 1.24869 0.95097 0.95007 0.98850 1.69881 1.36796 1.22706 1.23428 0.86579 0.79237 0.79327 0.82760 1.20852 1.21253 1.19902 1.60773 1.48228 1.16280 1.05652 1.20316 0.94442 0.97099 0.87499 1.22552 0.96366 0.91580 0.96950 1.21417 1.08078 1.01132 0.97606 1.22438 0.99332 0.87977 1.00739 1.48474 1.38938 1.10165 1.19257 1.21744 1.03984 0.80823 0.97074 1.77364 1.20330 1.14603 0.99652 0.96817 0.92572 0.93886 0.97055 0.89509 0.93001 0.84937 0.89993 0.94767 0.83624 0.81414 0.91107 0.89955 0.89613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.74 9.52 37.16 0.35 -2.39 16 2 C -0.10 -2.52 5.59 -26.73 -0.15 -2.67 16 3 C 0.22 5.48 2.30 -68.86 -0.16 5.32 16 4 H 0.00 0.06 7.71 -51.93 -0.40 -0.34 16 5 C -0.51 -14.02 7.26 -34.44 -0.25 -14.27 16 6 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 7 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 8 N -0.89 -25.42 11.32 55.43 0.63 -24.79 16 9 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 N -0.68 -15.08 5.64 -109.22 -0.62 -15.69 16 14 C 0.14 2.70 6.10 -4.97 -0.03 2.67 16 15 C 0.09 1.67 6.68 -82.40 -0.55 1.12 16 16 C -0.25 -3.87 10.74 -40.01 -0.43 -4.30 16 17 C 0.04 0.51 11.49 -17.22 -0.20 0.32 16 18 N -0.39 -5.40 4.01 -68.16 -0.27 -5.67 16 19 C 0.11 0.93 11.47 59.85 0.69 1.62 16 20 N -0.30 -5.35 12.58 33.67 0.42 -4.93 16 21 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 22 H 0.06 1.38 7.07 -51.93 -0.37 1.02 16 23 H 0.04 0.94 7.74 -51.93 -0.40 0.54 16 24 H 0.01 0.25 7.61 -51.93 -0.39 -0.15 16 25 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.33 7.66 8.13 -39.29 -0.32 7.34 16 28 H 0.08 1.53 7.61 -51.93 -0.40 1.14 16 29 H 0.03 0.70 7.94 -51.93 -0.41 0.28 16 30 H 0.15 2.00 8.06 -52.49 -0.42 1.58 16 31 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 285.34 15.07 4.30 4.30 Total: -1.00 -31.02 285.34 -6.46 -37.48 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: -5.08 Total: 3.74 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: -0.82 Total: -10.93 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: 0.16 Total: -51.09 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -31.02 -6.46 -37.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124746634.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.824 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds