Wall clock time and date at job start Sun Mar 29 2020 21:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86800 * 119.99596 * 2 1 4 4 H 1.48503 * 109.47316 * 270.00264 * 3 2 1 5 5 H 1.48496 * 109.47358 * 30.00143 * 3 2 1 6 6 H 1.48501 * 109.47251 * 150.00551 * 3 2 1 7 7 C 1.38804 * 120.00107 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00610 * 359.97438 * 7 2 1 9 9 N 1.36944 * 120.00137 * 179.97438 * 7 2 1 10 10 C 1.46492 * 120.00192 * 179.97438 * 9 7 2 11 11 H 1.09000 * 109.47366 * 325.00133 * 10 9 7 12 12 C 1.53065 * 109.47132 * 84.99846 * 10 9 7 13 13 C 1.52994 * 109.44023 * 60.57409 * 12 10 9 14 14 C 1.53003 * 109.55234 * 60.28057 * 13 12 10 15 15 C 1.53062 * 109.43504 * 299.71049 * 14 13 12 16 16 C 1.52681 * 109.47084 * 59.44201 * 15 14 13 17 17 C 1.53981 * 109.81247 * 179.63084 * 16 15 14 18 18 C 1.54949 * 104.13477 * 217.34831 * 17 16 15 19 19 C 1.54915 * 102.78806 * 37.69650 * 18 17 16 20 20 C 1.53618 * 109.96122 * 62.28935 * 16 15 14 21 21 H 0.96998 * 120.00113 * 359.97438 * 1 2 3 22 22 H 0.97000 * 119.99095 * 359.97438 * 9 7 2 23 23 H 1.08995 * 109.47666 * 300.58398 * 12 10 9 24 24 H 1.08995 * 109.47524 * 180.56490 * 12 10 9 25 25 H 1.08995 * 109.46073 * 300.25298 * 13 12 10 26 26 H 1.09004 * 109.45908 * 180.30115 * 13 12 10 27 27 H 1.09009 * 109.47928 * 179.72425 * 14 13 12 28 28 H 1.08997 * 109.48882 * 59.70855 * 14 13 12 29 29 H 1.09002 * 109.47381 * 179.44472 * 15 14 13 30 30 H 1.09001 * 109.47206 * 299.44650 * 15 14 13 31 31 H 1.08998 * 110.49312 * 336.01318 * 17 16 15 32 32 H 1.09002 * 110.49132 * 98.68417 * 17 16 15 33 33 H 1.09004 * 110.75541 * 279.36894 * 18 17 16 34 34 H 1.09002 * 110.74982 * 156.01534 * 18 17 16 35 35 H 1.09002 * 110.48727 * 203.52617 * 19 18 17 36 36 H 1.08996 * 110.48484 * 80.88522 * 19 18 17 37 37 H 1.09002 * 110.05870 * 238.30264 * 20 16 15 38 38 H 1.09004 * 110.05340 * 359.78990 * 20 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4976 2.0466 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 1.4704 -2.1374 -0.0005 9 7 3.3797 -1.2021 -0.0011 10 6 4.1122 -2.4707 -0.0011 11 1 3.5651 -3.2062 0.5887 12 6 4.2578 -2.9758 -1.4386 13 6 5.0382 -1.9495 -2.2623 14 6 6.4284 -1.7548 -1.6537 15 6 6.2887 -1.2462 -0.2169 16 6 5.4967 -2.2589 0.6068 17 6 5.3593 -1.7591 2.0567 18 6 5.4802 -3.0447 2.9132 19 6 6.5557 -3.8621 2.1547 20 6 6.2539 -3.5943 0.6650 21 1 -0.4850 0.8400 0.0004 22 1 3.8646 -0.3620 -0.0014 23 1 3.2696 -3.1171 -1.8760 24 1 4.7941 -3.9247 -1.4378 25 1 4.5041 -0.9994 -2.2591 26 1 5.1375 -2.3065 -3.2875 27 1 6.9851 -1.0271 -2.2443 28 1 6.9613 -2.7057 -1.6525 29 1 7.2786 -1.1166 0.2207 30 1 5.7645 -0.2905 -0.2191 31 1 6.1624 -1.0627 2.2980 32 1 4.3873 -1.2896 2.2080 33 1 4.5326 -3.5828 2.9381 34 1 5.8168 -2.8063 3.9221 35 1 6.4562 -4.9241 2.3791 36 1 7.5544 -3.5090 2.4112 37 1 5.6337 -4.3937 0.2596 38 1 7.1847 -3.5210 0.1025 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307258397.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:05 Heat of formation + Delta-G solvation = -32.761101 kcal Electronic energy + Delta-G solvation = -16698.012330 eV Core-core repulsion = 14345.478547 eV Total energy + Delta-G solvation = -2352.533783 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.22531 -36.79602 -35.44774 -33.18488 -31.27782 -30.09375 -29.41187 -25.75085 -24.46754 -23.27666 -21.71086 -21.07547 -19.85342 -18.59676 -16.86795 -16.64042 -16.28141 -15.80037 -15.34712 -14.80144 -14.50090 -14.27613 -13.96323 -13.77786 -13.49840 -13.05523 -12.84266 -12.42542 -12.34899 -12.15405 -11.97711 -11.89072 -11.85079 -11.71443 -11.57664 -11.31308 -11.18584 -10.98318 -10.66413 -10.63970 -9.21206 -8.00715 -5.30144 1.33442 1.36117 1.43417 2.47531 3.30762 3.57112 3.76780 3.81406 3.93841 4.16919 4.26049 4.27021 4.50583 4.57909 4.64380 4.66152 4.74693 4.78775 4.89237 4.92917 4.99042 5.08586 5.11498 5.14488 5.19188 5.26193 5.30474 5.40470 5.45576 5.51673 5.53639 5.60370 5.70552 5.76027 5.83237 6.25212 7.11933 7.91395 8.10322 9.21793 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028095 B = 0.010785 C = 0.009659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.367362 B = 2595.499317 C = 2898.035783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.987 5.987 2 C -0.066 4.066 3 Si 0.946 3.054 4 H -0.281 1.281 5 H -0.297 1.297 6 H -0.254 1.254 7 C -0.215 4.215 8 H 0.052 0.948 9 N -0.742 5.742 10 C 0.188 3.812 11 H 0.029 0.971 12 C -0.130 4.130 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.106 4.106 16 C -0.061 4.061 17 C -0.121 4.121 18 C -0.123 4.123 19 C -0.115 4.115 20 C -0.109 4.109 21 H 0.255 0.745 22 H 0.363 0.637 23 H 0.028 0.972 24 H 0.077 0.923 25 H 0.034 0.966 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.035 0.965 31 H 0.070 0.930 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.655 -6.027 0.991 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.639 5.639 2 C -0.257 4.257 3 Si 0.774 3.226 4 H -0.207 1.207 5 H -0.224 1.224 6 H -0.179 1.179 7 C -0.346 4.346 8 H 0.070 0.930 9 N -0.385 5.385 10 C 0.080 3.920 11 H 0.047 0.953 12 C -0.170 4.170 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.143 4.143 16 C -0.061 4.061 17 C -0.159 4.159 18 C -0.161 4.161 19 C -0.153 4.153 20 C -0.147 4.147 21 H 0.064 0.936 22 H 0.198 0.802 23 H 0.047 0.953 24 H 0.096 0.904 25 H 0.053 0.947 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.061 0.939 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.081 0.919 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 18.456 -6.117 0.998 19.469 hybrid contribution -0.770 1.294 -0.071 1.507 sum 17.686 -4.823 0.926 18.355 Atomic orbital electron populations 1.69880 1.07006 1.26295 1.60739 1.25386 0.95986 1.00781 1.03568 0.85527 0.78696 0.80386 0.77957 1.20720 1.22381 1.17903 1.19022 0.82947 0.93016 1.39620 0.92978 1.42794 1.01969 1.03978 1.89801 1.20363 0.91092 0.86577 0.93925 0.95292 1.22047 0.98692 0.98871 0.97395 1.21376 0.96317 0.98674 0.98592 1.21545 0.95948 1.02064 0.95131 1.21586 0.99667 0.97220 0.95871 1.21130 0.93916 0.96551 0.94530 1.22447 1.00859 0.97995 0.94611 1.22474 0.98939 0.95883 0.98770 1.22352 0.98672 0.99904 0.94332 1.22254 1.00115 0.95065 0.97254 0.93610 0.80242 0.95349 0.90410 0.94670 0.91825 0.91349 0.89937 0.90025 0.94616 0.91148 0.93946 0.93311 0.90940 0.90975 0.90401 0.91908 0.89703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -64.98 13.97 21.65 0.30 -64.68 16 2 C -0.07 -4.02 5.50 84.86 0.47 -3.56 16 3 Si 0.95 47.12 27.73 68.60 1.90 49.02 16 4 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 5 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 6 H -0.25 -11.54 6.52 99.48 0.65 -10.89 16 7 C -0.21 -12.50 10.41 84.03 0.87 -11.63 16 8 H 0.05 3.35 8.06 -2.91 -0.02 3.33 16 9 N -0.74 -35.07 3.18 -323.36 -1.03 -36.10 16 10 C 0.19 7.21 1.84 44.91 0.08 7.30 16 11 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 12 C -0.13 -4.52 5.38 30.61 0.16 -4.35 16 13 C -0.11 -3.50 5.76 30.59 0.18 -3.33 16 14 C -0.11 -2.69 5.70 30.62 0.17 -2.51 16 15 C -0.11 -2.87 4.24 30.51 0.13 -2.74 16 16 C -0.06 -1.78 0.39 -51.85 -0.02 -1.80 16 17 C -0.12 -3.73 5.78 31.59 0.18 -3.55 16 18 C -0.12 -3.17 6.91 31.91 0.22 -2.95 16 19 C -0.12 -2.35 6.84 31.70 0.22 -2.13 16 20 C -0.11 -2.48 5.06 31.26 0.16 -2.32 16 21 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 22 H 0.36 16.79 4.04 -92.71 -0.37 16.42 16 23 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 24 H 0.08 2.22 6.63 -2.39 -0.02 2.20 16 25 H 0.03 1.32 7.61 -2.39 -0.02 1.30 16 26 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 27 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.08 1.67 6.62 -2.39 -0.02 1.65 16 29 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.04 1.14 6.63 -2.39 -0.02 1.13 16 31 H 0.07 1.92 7.84 -2.39 -0.02 1.90 16 32 H 0.04 1.64 7.14 -2.39 -0.02 1.62 16 33 H 0.05 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.06 1.48 6.48 -2.39 -0.02 1.46 16 38 H 0.08 1.58 6.46 -2.38 -0.02 1.57 16 Total: -1.00 -67.23 278.46 4.59 -62.64 By element: Atomic # 1 Polarization: 22.10 SS G_CDS: 0.59 Total: 22.69 kcal Atomic # 6 Polarization: -36.40 SS G_CDS: 2.83 Total: -33.58 kcal Atomic # 7 Polarization: -100.05 SS G_CDS: -0.73 Total: -100.77 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.90 Total: 49.02 kcal Total: -67.23 4.59 -62.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307258397.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.881 kcal (2) G-P(sol) polarization free energy of solvation -67.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds