Wall clock time and date at job start Sun Mar 29 2020 21:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.52995 * 109.47437 * 2 1 4 4 H 1.08999 * 109.46984 * 305.60799 * 3 2 1 5 5 C 1.50698 * 109.47509 * 185.60541 * 3 2 1 6 6 H 1.08002 * 120.00113 * 245.40272 * 5 3 2 7 7 C 1.37879 * 120.00190 * 65.40237 * 5 3 2 8 8 N 1.31507 * 120.00285 * 197.21742 * 7 5 3 9 9 Si 1.86805 * 119.99653 * 17.21920 * 7 5 3 10 10 H 1.48508 * 109.46841 * 86.80435 * 9 7 5 11 11 H 1.48499 * 109.47284 * 206.80746 * 9 7 5 12 12 H 1.48503 * 109.47213 * 326.81293 * 9 7 5 13 13 N 1.46904 * 109.47366 * 65.60642 * 3 2 1 14 14 C 1.46902 * 111.00027 * 251.62155 * 13 3 2 15 15 C 1.50703 * 109.47312 * 183.52146 * 14 13 3 16 16 C 1.35313 * 126.12323 * 95.00045 * 15 14 13 17 17 C 1.39871 * 107.91825 * 179.97438 * 16 15 14 18 18 C 1.50704 * 125.89842 * 179.97438 * 17 16 15 19 19 N 1.30835 * 108.20302 * 0.02562 * 17 16 15 20 20 N 1.34945 * 126.12969 * 274.69042 * 15 14 13 21 21 H 0.97010 * 126.03401 * 0.03614 * 20 15 14 22 22 H 1.09000 * 109.47280 * 305.16400 * 1 2 3 23 23 H 1.09002 * 109.47750 * 185.16391 * 1 2 3 24 24 H 1.09006 * 109.47591 * 65.16078 * 1 2 3 25 25 H 1.08999 * 109.47304 * 119.99935 * 2 1 3 26 26 H 1.09000 * 109.47481 * 240.00070 * 2 1 3 27 27 H 0.97005 * 120.00226 * 179.97438 * 8 7 5 28 28 H 1.00903 * 110.99505 * 15.57314 * 13 3 2 29 29 H 1.08998 * 109.47428 * 303.52388 * 14 13 3 30 30 H 1.09006 * 109.47105 * 63.52430 * 14 13 3 31 31 H 1.07997 * 126.04124 * 359.93746 * 16 15 14 32 32 H 1.08994 * 109.46942 * 90.00180 * 18 17 16 33 33 H 1.09009 * 109.46771 * 209.99873 * 18 17 16 34 34 H 1.08992 * 109.46948 * 329.99713 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5970 1.9844 -0.8355 5 6 3.5405 1.4447 -0.1388 6 1 4.1572 1.8069 0.6705 7 6 4.1263 0.9844 -1.2989 8 7 5.4021 0.6655 -1.3098 9 14 3.1076 0.8136 -2.8555 10 1 3.0998 2.1065 -3.5862 11 1 3.6973 -0.2400 -3.7199 12 1 1.7159 0.4390 -2.4977 13 7 1.6640 2.0948 1.2614 14 6 0.6037 3.0883 1.0446 15 6 0.3056 3.7960 2.3413 16 6 0.8337 4.9740 2.7469 17 6 0.2962 5.2770 4.0021 18 6 0.6094 6.4997 4.8257 19 7 -0.5246 4.3152 4.3383 20 7 -0.5400 3.3714 3.3033 21 1 -1.0641 2.5552 3.2829 22 1 -0.3634 0.5918 0.8401 23 1 -0.3635 -1.0235 0.0925 24 1 -0.3634 0.4317 -0.9326 25 1 1.8933 -0.5138 0.8900 26 1 1.8933 -0.5138 -0.8900 27 1 5.8141 0.3413 -2.1259 28 1 1.3855 1.4137 1.9517 29 1 0.9328 3.8147 0.3016 30 1 -0.2966 2.5872 0.6889 31 1 1.5449 5.5739 2.1985 32 1 -0.0886 7.2973 4.5717 33 1 0.5155 6.2582 5.8846 34 1 1.6276 6.8274 4.6166 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308496856.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:29 Heat of formation + Delta-G solvation = 65.990156 kcal Electronic energy + Delta-G solvation = -15137.605236 eV Core-core repulsion = 12685.813286 eV Total energy + Delta-G solvation = -2451.791951 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00788 -36.91757 -33.31871 -32.29225 -31.62309 -29.62308 -27.83505 -27.38096 -24.50823 -22.44847 -20.41802 -19.92085 -19.67259 -17.31963 -16.52164 -15.40641 -14.89392 -14.61863 -14.02787 -13.59345 -13.36943 -13.14765 -12.80937 -12.73743 -12.54909 -12.12115 -11.94410 -11.80515 -11.64478 -10.93749 -10.77177 -10.48522 -10.36211 -10.01814 -9.63014 -9.40581 -9.09987 -8.41935 -8.37334 -7.47965 -6.08943 -4.00157 2.06015 2.97125 3.04033 3.24940 3.33329 3.36199 4.40373 4.77008 4.90263 5.13229 5.15788 5.34935 5.45215 5.63597 5.67486 5.73324 5.78760 5.89772 5.94058 5.95438 6.07501 6.36644 6.41258 6.50843 6.63406 6.76166 6.88382 7.09136 7.45540 7.70173 7.82158 7.88074 8.15717 8.67134 9.10514 9.57465 11.04452 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038206 B = 0.006622 C = 0.006053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.693689 B = 4227.273247 C = 4625.037207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.149 4.149 3 C 0.194 3.806 4 H 0.022 0.978 5 C -0.501 4.501 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.891 5.891 9 Si 0.858 3.142 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.258 1.258 13 N -0.663 5.663 14 C 0.116 3.884 15 C 0.108 3.892 16 C -0.255 4.255 17 C 0.071 3.929 18 C -0.071 4.071 19 N -0.305 5.305 20 N -0.478 5.478 21 H 0.433 0.567 22 H 0.041 0.959 23 H 0.044 0.956 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.263 0.737 28 H 0.326 0.674 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.147 0.853 32 H 0.073 0.927 33 H 0.069 0.931 34 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.845 5.621 5.673 14.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.188 4.188 3 C 0.086 3.914 4 H 0.040 0.960 5 C -0.539 4.539 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.529 5.529 9 Si 0.685 3.315 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.183 1.183 13 N -0.294 5.294 14 C -0.015 4.015 15 C -0.021 4.021 16 C -0.285 4.285 17 C -0.096 4.096 18 C -0.129 4.129 19 N -0.129 5.129 20 N -0.187 5.187 21 H 0.276 0.724 22 H 0.060 0.940 23 H 0.063 0.937 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.143 0.857 29 H 0.115 0.885 30 H 0.051 0.949 31 H 0.165 0.835 32 H 0.092 0.908 33 H 0.088 0.912 34 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.951 5.606 6.396 14.669 hybrid contribution -0.892 -0.984 -1.817 2.250 sum -12.844 4.623 4.579 14.398 Atomic orbital electron populations 1.21954 0.98637 1.00317 1.00415 1.22565 0.92528 1.01397 1.02339 1.19588 0.97023 0.88388 0.86395 0.95990 1.20960 0.88946 1.41632 1.02411 0.90063 1.24899 0.94740 0.94645 0.98614 1.69981 1.11936 1.43177 1.27788 0.87296 0.81690 0.78041 0.84481 1.20486 1.21484 1.18270 1.60649 1.37868 1.18589 1.12261 1.20728 0.94130 0.96033 0.90629 1.21241 0.92539 0.95486 0.92799 1.21137 1.09213 0.99778 0.98391 1.22300 0.95798 0.96147 0.95318 1.20146 1.02244 0.92131 0.98413 1.77174 1.24259 1.01180 1.10337 1.46213 1.36962 1.21077 1.14403 0.72382 0.94028 0.93705 0.93507 0.92203 0.91715 0.92728 0.85659 0.88530 0.94944 0.83518 0.90837 0.91222 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.45 37.15 0.35 -2.14 16 2 C -0.15 -3.00 4.56 -26.74 -0.12 -3.12 16 3 C 0.19 4.29 1.73 -68.87 -0.12 4.17 16 4 H 0.02 0.50 6.15 -51.93 -0.32 0.18 16 5 C -0.50 -13.72 9.25 -34.44 -0.32 -14.04 16 6 H 0.08 2.50 8.06 -52.49 -0.42 2.08 16 7 C 0.07 2.05 5.30 -17.82 -0.09 1.95 16 8 N -0.89 -26.77 13.96 55.43 0.77 -26.00 16 9 Si 0.86 20.46 25.86 -169.99 -4.40 16.07 16 10 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 12 H -0.26 -5.71 5.65 56.52 0.32 -5.39 16 13 N -0.66 -12.76 6.02 -109.22 -0.66 -13.42 16 14 C 0.12 1.86 5.63 -4.97 -0.03 1.83 16 15 C 0.11 1.67 6.75 -82.26 -0.56 1.11 16 16 C -0.26 -3.95 10.65 -40.01 -0.43 -4.38 16 17 C 0.07 1.03 7.22 -82.40 -0.59 0.44 16 18 C -0.07 -0.74 10.45 36.01 0.38 -0.36 16 19 N -0.31 -4.76 12.70 33.67 0.43 -4.34 16 20 N -0.48 -6.84 7.36 33.48 0.25 -6.59 16 21 H 0.43 4.98 8.96 -182.60 -1.64 3.34 16 22 H 0.04 0.59 5.97 -51.93 -0.31 0.28 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.20 8.06 -51.93 -0.42 0.78 16 26 H 0.06 1.41 5.17 -51.93 -0.27 1.14 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.33 5.87 7.71 -39.29 -0.30 5.57 16 29 H 0.10 1.59 8.06 -51.93 -0.42 1.17 16 30 H 0.03 0.47 6.61 -51.93 -0.34 0.13 16 31 H 0.15 2.12 8.06 -52.49 -0.42 1.70 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 278.56 15.07 4.20 4.20 Total: -1.00 -30.90 278.56 -7.13 -38.04 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.19 Total: 6.59 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -1.53 Total: -14.54 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.79 Total: -50.35 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.40 Total: 16.07 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -30.90 -7.13 -38.04 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308496856.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.026 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds