Wall clock time and date at job start Sun Mar 29 2020 21:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47340 * 2 1 4 4 N 1.46906 * 109.47113 * 119.99821 * 2 1 3 5 5 C 1.46901 * 110.99793 * 275.00325 * 4 2 1 6 6 C 1.53000 * 109.46769 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46735 * 180.02562 * 6 5 4 8 8 H 1.07996 * 119.99928 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99611 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99711 * 179.97438 * 9 7 6 11 11 Si 1.86804 * 120.00219 * 359.97438 * 9 7 6 12 12 H 1.48497 * 109.46794 * 90.00022 * 11 9 7 13 13 H 1.48502 * 109.47140 * 210.00005 * 11 9 7 14 14 H 1.48501 * 109.46982 * 330.00118 * 11 9 7 15 15 C 1.50696 * 109.47391 * 239.99666 * 2 1 3 16 16 C 1.39873 * 126.04368 * 280.02850 * 15 2 1 17 17 N 1.30837 * 108.20321 * 179.97438 * 16 15 2 18 18 N 1.40078 * 108.20605 * 359.97438 * 17 16 15 19 19 C 1.46502 * 126.03600 * 180.02562 * 18 17 16 20 20 C 1.34952 * 107.92736 * 359.76158 * 18 17 16 21 21 H 1.08996 * 109.47268 * 60.00580 * 1 2 3 22 22 H 1.09003 * 109.47340 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47731 * 300.00135 * 1 2 3 24 24 H 1.00899 * 110.99995 * 151.04723 * 4 2 1 25 25 H 1.09002 * 109.47401 * 59.99808 * 5 4 2 26 26 H 1.09001 * 109.46874 * 299.99821 * 5 4 2 27 27 H 1.09001 * 109.47194 * 299.99524 * 6 5 4 28 28 H 1.08992 * 109.47399 * 59.99697 * 6 5 4 29 29 H 0.97000 * 119.99684 * 179.97438 * 10 9 7 30 30 H 1.07998 * 125.89632 * 359.97438 * 16 15 2 31 31 H 1.09000 * 109.47369 * 89.98014 * 19 18 17 32 32 H 1.09000 * 109.47146 * 209.97520 * 19 18 17 33 33 H 1.09004 * 109.46907 * 329.97227 * 19 18 17 34 34 H 1.07998 * 126.12737 * 180.23697 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0823 0.2227 2.3469 6 6 2.5961 -0.5328 3.5742 7 6 2.6598 0.4059 4.7515 8 1 2.3639 1.4381 4.6357 9 6 3.0959 -0.0531 5.9763 10 7 3.1520 0.7661 7.0035 11 14 3.6071 -1.8387 6.1766 12 1 5.0575 -1.9736 5.8882 13 1 3.3363 -2.2778 7.5691 14 1 2.8338 -2.6839 5.2317 15 6 2.0323 -0.7104 -1.2304 16 6 2.1210 -2.0957 -1.4023 17 7 2.6015 -2.3294 -2.5966 18 7 2.8336 -1.0985 -3.2235 19 6 3.3693 -0.9063 -4.5735 20 6 2.4710 -0.1210 -2.3667 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 2.9173 -1.1205 1.0288 25 1 1.0869 0.6164 2.5525 26 1 2.7587 1.0463 2.1182 27 1 1.9201 -1.3566 3.8031 28 1 3.5915 -0.9261 3.3683 29 1 3.4585 0.4431 7.8653 30 1 1.8412 -2.8433 -0.6748 31 1 2.5478 -0.8730 -5.2891 32 1 3.9246 0.0308 -4.6140 33 1 4.0342 -1.7336 -4.8217 34 1 2.5243 0.9414 -2.5533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308507395.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:42 Heat of formation + Delta-G solvation = 47.559039 kcal Electronic energy + Delta-G solvation = -14734.604340 eV Core-core repulsion = 12282.013156 eV Total energy + Delta-G solvation = -2452.591184 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.14240 -38.04125 -35.34691 -34.04171 -33.01417 -30.75320 -29.57059 -27.49110 -25.91774 -23.29567 -22.39194 -21.62241 -20.69578 -18.89702 -17.87084 -16.51744 -16.35646 -16.19470 -15.74574 -15.29529 -14.96520 -14.64807 -14.43889 -13.75172 -13.65356 -13.41885 -13.34250 -12.99080 -12.86405 -12.62622 -12.36001 -11.87951 -11.74194 -11.60603 -11.37726 -11.30319 -10.74459 -10.33129 -9.31502 -9.23956 -8.27800 -6.31762 0.95997 1.38333 1.40826 1.54229 1.72845 1.84102 2.39013 3.08114 3.34520 3.71418 4.04362 4.23670 4.40741 4.42188 4.46574 4.53790 4.55640 4.70858 4.73743 4.87921 4.90374 5.00514 5.11089 5.16090 5.40482 5.45961 5.54631 5.67719 5.70897 6.14457 6.26014 6.32723 6.61129 6.76386 6.77779 7.33196 8.88902 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.045190 B = 0.005098 C = 0.004872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.462051 B = 5490.741684 C = 5745.723138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.164 3.836 3 H 0.046 0.954 4 N -0.685 5.685 5 C 0.089 3.911 6 C -0.005 4.005 7 C -0.532 4.532 8 H 0.033 0.967 9 C 0.006 3.994 10 N -0.952 5.952 11 Si 0.952 3.048 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.248 1.248 15 C -0.252 4.252 16 C 0.058 3.942 17 N -0.336 5.336 18 N -0.381 5.381 19 C 0.094 3.906 20 C 0.066 3.934 21 H 0.067 0.933 22 H 0.053 0.947 23 H 0.044 0.956 24 H 0.339 0.661 25 H 0.058 0.942 26 H 0.016 0.984 27 H 0.023 0.977 28 H 0.015 0.985 29 H 0.266 0.734 30 H 0.185 0.815 31 H 0.087 0.913 32 H 0.114 0.886 33 H 0.088 0.912 34 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.874 -2.893 -23.634 23.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.054 3.946 3 H 0.064 0.936 4 N -0.317 5.317 5 C -0.040 4.040 6 C -0.042 4.042 7 C -0.571 4.571 8 H 0.051 0.949 9 C -0.191 4.191 10 N -0.592 5.592 11 Si 0.776 3.224 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.171 1.171 15 C -0.264 4.264 16 C -0.127 4.127 17 N -0.158 5.158 18 N -0.163 5.163 19 C -0.046 4.046 20 C -0.082 4.082 21 H 0.086 0.914 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.157 0.843 25 H 0.076 0.924 26 H 0.034 0.966 27 H 0.041 0.959 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.202 0.798 31 H 0.105 0.895 32 H 0.132 0.868 33 H 0.107 0.893 34 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -1.038 -4.002 -24.322 24.671 hybrid contribution 0.745 0.740 1.101 1.522 sum -0.292 -3.263 -23.220 23.450 Atomic orbital electron populations 1.21715 0.93948 1.01865 1.01022 1.19682 0.95467 0.94290 0.85173 0.93594 1.60606 1.33350 1.33526 1.04216 1.21654 0.99258 0.93144 0.89975 1.19438 0.96034 0.95908 0.92868 1.21433 1.43634 0.97036 0.94956 0.94881 1.25983 0.95086 1.02703 0.95342 1.70065 1.49299 1.37864 1.02003 0.85622 0.79383 0.79760 0.77652 1.19242 1.20983 1.17114 1.20167 1.14528 0.93601 0.98074 1.23884 0.97966 0.96730 0.94130 1.77297 1.23916 1.05041 1.09574 1.48813 1.49493 1.03288 1.14688 1.22184 1.00306 1.05028 0.77093 1.22782 0.98646 0.96698 0.90055 0.91374 0.92790 0.93649 0.84264 0.92357 0.96623 0.95875 0.96625 0.92486 0.79799 0.89472 0.86799 0.89336 0.77794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.24 9.40 71.98 0.68 -2.57 16 2 C 0.16 4.42 3.05 44.16 0.13 4.56 16 3 H 0.05 1.22 7.79 -2.39 -0.02 1.20 16 4 N -0.69 -22.52 6.11 -495.44 -3.03 -25.54 16 5 C 0.09 3.57 5.42 86.30 0.47 4.04 16 6 C 0.00 -0.22 4.30 29.85 0.13 -0.10 16 7 C -0.53 -31.32 9.66 25.60 0.25 -31.07 16 8 H 0.03 2.12 7.99 -2.91 -0.02 2.10 16 9 C 0.01 0.33 5.47 84.66 0.46 0.79 16 10 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 11 Si 0.95 45.38 27.47 68.60 1.88 47.26 16 12 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.25 -11.13 6.54 99.48 0.65 -10.48 16 15 C -0.25 -6.16 4.81 -20.14 -0.10 -6.25 16 16 C 0.06 1.54 11.46 85.24 0.98 2.52 16 17 N -0.34 -8.98 12.58 -57.02 -0.72 -9.70 16 18 N -0.38 -7.68 4.01 -369.55 -1.48 -9.17 16 19 C 0.09 0.95 11.47 127.77 1.47 2.42 16 20 C 0.07 1.28 11.40 83.54 0.95 2.23 16 21 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 22 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 23 H 0.04 1.25 7.45 -2.39 -0.02 1.23 16 24 H 0.34 10.90 8.15 -89.69 -0.73 10.17 16 25 H 0.06 2.41 7.44 -2.39 -0.02 2.39 16 26 H 0.02 0.64 8.06 -2.39 -0.02 0.62 16 27 H 0.02 1.12 7.20 -2.39 -0.02 1.10 16 28 H 0.02 0.72 7.57 -2.39 -0.02 0.70 16 29 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 30 H 0.19 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.21 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -71.63 288.10 2.66 -68.97 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.29 Total: 11.85 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 5.42 Total: -23.43 kcal Atomic # 7 Polarization: -99.72 SS G_CDS: -4.93 Total: -104.65 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.88 Total: 47.26 kcal Total: -71.63 2.66 -68.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308507395.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.529 kcal (2) G-P(sol) polarization free energy of solvation -71.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds