Wall clock time and date at job start Sun Mar 29 2020 22:21:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46763 * 2 1 4 4 H 1.09003 * 112.90819 * 43.84369 * 3 2 1 5 5 C 1.53781 * 113.61405 * 272.59120 * 3 2 1 6 6 C 1.53785 * 87.08277 * 220.01955 * 5 3 2 7 7 C 1.53783 * 87.07962 * 25.43229 * 6 5 3 8 8 H 1.09001 * 113.69391 * 220.00881 * 7 6 5 9 9 N 1.46899 * 113.61415 * 89.11397 * 7 6 5 10 10 C 1.46904 * 110.99822 * 109.57875 * 9 7 6 11 11 C 1.52998 * 109.47276 * 184.62669 * 10 9 7 12 12 C 1.50694 * 115.55096 * 294.95926 * 11 10 9 13 13 H 1.07997 * 120.00503 * 95.51584 * 12 11 10 14 14 C 1.37882 * 120.00078 * 275.51591 * 12 11 10 15 15 N 1.31513 * 119.99997 * 5.42248 * 14 12 11 16 16 Si 1.86805 * 120.00225 * 185.42064 * 14 12 11 17 17 H 1.48497 * 109.46735 * 89.99862 * 16 14 12 18 18 H 1.48500 * 109.47209 * 210.00158 * 16 14 12 19 19 H 1.48509 * 109.46871 * 330.00269 * 16 14 12 20 20 C 1.52995 * 117.49984 * 149.28734 * 11 10 9 21 21 C 1.52999 * 117.49771 * 80.62687 * 11 10 9 22 22 H 1.09005 * 109.46540 * 179.97438 * 1 2 3 23 23 H 1.08988 * 109.47509 * 300.00089 * 1 2 3 24 24 H 1.08997 * 109.46832 * 60.00327 * 1 2 3 25 25 H 1.08995 * 109.47446 * 240.00338 * 2 1 3 26 26 H 1.09001 * 109.47307 * 119.99581 * 2 1 3 27 27 H 1.08996 * 113.61506 * 334.56658 * 5 3 2 28 28 H 1.09004 * 113.61349 * 105.47092 * 5 3 2 29 29 H 1.08996 * 113.61175 * 270.88586 * 6 5 3 30 30 H 1.08989 * 113.69110 * 139.99020 * 6 5 3 31 31 H 1.00896 * 110.99884 * 345.63017 * 9 7 6 32 32 H 1.08996 * 109.47647 * 304.63007 * 10 9 7 33 33 H 1.09009 * 109.46862 * 64.62933 * 10 9 7 34 34 H 0.97000 * 119.99972 * 184.99726 * 15 14 12 35 35 H 1.08998 * 117.49966 * 0.02562 * 20 11 10 36 36 H 1.08996 * 117.50229 * 145.02282 * 20 11 10 37 37 H 1.08999 * 117.49774 * 214.97933 * 21 11 10 38 38 H 1.08999 * 117.49847 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.4986 2.0839 0.6955 5 6 2.1852 2.0446 -1.4076 6 6 3.4872 2.6941 -0.9099 7 6 3.5689 1.5555 0.1205 8 1 3.9066 1.8791 1.1051 9 7 4.2867 0.3704 -0.3677 10 6 5.5817 0.2231 0.3101 11 6 6.3479 -0.9505 -0.3035 12 6 5.7233 -2.3079 -0.1080 13 1 5.0917 -2.7276 -0.8769 14 6 5.9581 -3.0141 1.0528 15 7 6.6383 -2.4608 2.0329 16 14 5.3101 -4.7569 1.2331 17 1 6.3282 -5.7172 0.7368 18 1 5.0249 -5.0333 2.6640 19 1 4.0622 -4.9053 0.4419 20 6 7.8757 -0.8703 -0.3107 21 6 7.0938 -0.6986 -1.6154 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.3396 1.2990 -2.1875 28 1 1.4057 2.7645 -1.6571 29 1 3.3415 3.6776 -0.4632 30 1 4.2931 2.6776 -1.6436 31 1 4.4047 0.4062 -1.3691 32 1 6.1613 1.1382 0.1893 33 1 5.4171 0.0346 1.3710 34 1 6.8661 -2.9810 2.8193 35 1 8.3351 0.0183 0.1222 36 1 8.4291 -1.7994 -0.1743 37 1 7.1332 -1.5147 -2.3367 38 1 7.0391 0.3034 -2.0410 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308577824.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:59 Heat of formation + Delta-G solvation = 30.270186 kcal Electronic energy + Delta-G solvation = -15853.653034 eV Core-core repulsion = 13503.852492 eV Total energy + Delta-G solvation = -2349.800541 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.21818 -36.62144 -32.87721 -31.83588 -31.52687 -25.86667 -25.36316 -24.72396 -23.24458 -21.23170 -21.02088 -19.01886 -18.33120 -16.33720 -15.27601 -14.68966 -14.48560 -14.01846 -13.93757 -13.33851 -13.16642 -12.64883 -12.53255 -12.30520 -11.75365 -11.56272 -11.34478 -10.94651 -10.91945 -10.66718 -10.50456 -10.43450 -10.31255 -10.14988 -9.75824 -9.64094 -9.28979 -8.76253 -8.31954 -8.03673 -7.41844 -5.91201 -3.93618 3.37143 3.44139 3.48077 4.51378 4.72959 4.92870 5.00816 5.18054 5.35813 5.38776 5.50652 5.62668 5.65375 5.83028 5.89924 5.99048 6.10415 6.12163 6.20049 6.25937 6.38504 6.39417 6.51519 6.53970 6.61012 6.65891 6.75840 6.82520 6.96321 7.06294 7.15866 7.50478 7.64416 8.01002 8.06507 8.26548 8.58775 9.05406 9.69921 11.18448 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.009293 C = 0.007269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.238865 B = 3012.178879 C = 3851.283112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.102 4.102 4 H 0.079 0.921 5 C -0.132 4.132 6 C -0.174 4.174 7 C 0.073 3.927 8 H 0.072 0.928 9 N -0.645 5.645 10 C 0.109 3.891 11 C 0.050 3.950 12 C -0.468 4.468 13 H 0.058 0.942 14 C 0.068 3.932 15 N -0.885 5.885 16 Si 0.886 3.114 17 H -0.284 1.284 18 H -0.289 1.289 19 H -0.273 1.273 20 C -0.158 4.158 21 C -0.217 4.217 22 H 0.047 0.953 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.080 0.920 28 H 0.056 0.944 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.332 0.668 32 H -0.007 1.007 33 H 0.076 0.924 34 H 0.257 0.743 35 H 0.060 0.940 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.025 7.852 -4.102 11.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.134 4.134 3 C -0.121 4.121 4 H 0.098 0.902 5 C -0.170 4.170 6 C -0.213 4.213 7 C -0.039 4.039 8 H 0.090 0.910 9 N -0.273 5.273 10 C -0.020 4.020 11 C 0.049 3.951 12 C -0.506 4.506 13 H 0.077 0.923 14 C -0.134 4.134 15 N -0.523 5.523 16 Si 0.714 3.286 17 H -0.210 1.210 18 H -0.215 1.215 19 H -0.198 1.198 20 C -0.197 4.197 21 C -0.255 4.255 22 H 0.067 0.933 23 H 0.064 0.936 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.151 0.849 32 H 0.012 0.988 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.329 7.381 -3.449 10.959 hybrid contribution 0.329 -0.142 -0.213 0.417 sum -7.000 7.239 -3.662 10.716 Atomic orbital electron populations 1.21822 0.97614 1.00817 1.00615 1.21202 0.93087 0.95534 1.03626 1.22691 0.96147 0.96999 0.96286 0.90238 1.22917 0.96942 0.99560 0.97553 1.23605 0.98416 0.99100 1.00200 1.22673 0.94752 0.89145 0.97316 0.90979 1.60152 1.21959 1.36082 1.09141 1.21590 0.86921 0.94037 0.99424 1.18872 0.89416 0.94520 0.92250 1.20312 1.29107 0.99419 1.01750 0.92336 1.24916 0.95462 0.97646 0.95342 1.70012 1.39958 1.35337 1.06981 0.86687 0.79351 0.85455 0.77076 1.21037 1.21498 1.19821 1.22512 0.97661 1.00199 0.99281 1.22998 1.10947 0.99033 0.92472 0.93337 0.93622 0.93565 0.91134 0.91413 0.90140 0.92569 0.90708 0.91981 0.84918 0.98845 0.90540 0.93368 0.92181 0.90095 0.90525 0.92256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.90 37.16 0.37 -1.59 16 2 C -0.10 -1.51 5.09 -26.73 -0.14 -1.64 16 3 C -0.10 -1.47 3.63 -89.80 -0.33 -1.79 16 4 H 0.08 1.06 8.13 -51.93 -0.42 0.63 16 5 C -0.13 -1.73 7.41 -25.92 -0.19 -1.92 16 6 C -0.17 -2.37 7.60 -25.92 -0.20 -2.56 16 7 C 0.07 1.18 4.15 -66.90 -0.28 0.91 16 8 H 0.07 1.22 7.85 -51.93 -0.41 0.82 16 9 N -0.64 -12.42 5.50 -105.86 -0.58 -13.00 16 10 C 0.11 2.43 5.36 -3.82 -0.02 2.41 16 11 C 0.05 1.22 1.45 -155.67 -0.23 0.99 16 12 C -0.47 -12.68 8.74 -34.44 -0.30 -12.98 16 13 H 0.06 1.61 7.82 -52.49 -0.41 1.20 16 14 C 0.07 1.88 5.40 -17.82 -0.10 1.78 16 15 N -0.88 -25.22 12.92 55.43 0.72 -24.51 16 16 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 18 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 20 C -0.16 -3.74 9.44 -26.70 -0.25 -3.99 16 21 C -0.22 -4.71 9.96 -26.69 -0.27 -4.97 16 22 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.55 8.14 -51.94 -0.42 0.13 16 24 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.07 1.19 7.66 -51.93 -0.40 0.79 16 26 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 27 H 0.08 1.09 7.88 -51.93 -0.41 0.68 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.86 8.04 -51.93 -0.42 0.44 16 31 H 0.33 6.20 8.09 -39.29 -0.32 5.88 16 32 H -0.01 -0.14 8.08 -51.93 -0.42 -0.56 16 33 H 0.08 1.93 8.14 -51.92 -0.42 1.51 16 34 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 35 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.08 2.04 8.14 -51.93 -0.42 1.62 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 308.85 15.07 4.65 4.65 Total: -1.00 -27.28 308.85 -9.14 -36.42 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.99 Total: 5.31 kcal Atomic # 6 Polarization: -23.45 SS G_CDS: -1.92 Total: -25.37 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.13 Total: -37.51 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.28 -9.14 -36.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308577824.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.692 kcal (2) G-P(sol) polarization free energy of solvation -27.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.422 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds