Wall clock time and date at job start Sun Mar 29 2020 21:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 N 1.46897 * 109.47355 * 119.99775 * 2 1 3 5 5 C 1.46901 * 111.00443 * 275.00558 * 4 2 1 6 6 C 1.53003 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47350 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99385 * 359.97438 * 7 6 5 9 9 C 1.37866 * 120.00022 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00128 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00246 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47187 * 89.99902 * 11 9 7 13 13 H 1.48500 * 109.47517 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.47124 * 330.00031 * 11 9 7 15 15 C 1.50692 * 109.47289 * 240.00232 * 2 1 3 16 16 N 1.30501 * 125.64779 * 285.02345 * 15 2 1 17 17 C 1.34134 * 109.25535 * 179.97438 * 16 15 2 18 18 C 1.34668 * 108.01972 * 0.02562 * 17 16 15 19 19 N 1.35044 * 125.65329 * 105.02330 * 15 2 1 20 20 C 1.46498 * 126.39523 * 359.97438 * 19 15 2 21 21 H 1.08999 * 109.46895 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46877 * 299.99694 * 1 2 3 23 23 H 1.08995 * 109.47344 * 60.00223 * 1 2 3 24 24 H 1.00905 * 111.00192 * 38.95400 * 4 2 1 25 25 H 1.09000 * 109.46529 * 299.99891 * 5 4 2 26 26 H 1.09001 * 109.47183 * 59.99581 * 5 4 2 27 27 H 1.09001 * 109.46481 * 299.99836 * 6 5 4 28 28 H 1.08994 * 109.47030 * 59.99372 * 6 5 4 29 29 H 0.96998 * 120.00340 * 180.02562 * 10 9 7 30 30 H 1.08001 * 125.98356 * 179.97438 * 17 16 15 31 31 H 1.08003 * 126.59021 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47175 * 269.97755 * 20 19 15 33 33 H 1.09000 * 109.46887 * 29.98127 * 20 19 15 34 34 H 1.08998 * 109.47088 * 149.97524 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5963 -0.5328 3.5742 7 6 2.6612 0.4060 4.7512 8 1 2.3659 1.4384 4.6353 9 6 3.0975 -0.0529 5.9759 10 7 3.1547 0.7665 7.0030 11 14 3.6076 -1.8387 6.1764 12 1 5.0578 -1.9748 5.8874 13 1 3.3372 -2.2774 7.5691 14 1 2.8332 -2.6837 5.2322 15 6 2.0323 -0.7103 -1.2304 16 7 2.0267 -2.0017 -1.4187 17 6 2.5477 -2.2752 -2.6241 18 6 2.8896 -1.1091 -3.2045 19 7 2.5629 -0.1161 -2.3209 20 6 2.7525 1.3227 -2.5211 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.4496 -1.4979 1.4101 25 1 2.7588 1.0462 2.1182 26 1 1.0870 0.6163 2.5526 27 1 1.9202 -1.3567 3.8030 28 1 3.5917 -0.9262 3.3683 29 1 3.4620 0.4438 7.8645 30 1 2.6720 -3.2584 -3.0534 31 1 3.3353 -0.9819 -4.1800 32 1 1.8640 1.7443 -2.9910 33 1 2.9176 1.8049 -1.5576 34 1 3.6171 1.4893 -3.1635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308651296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:48 Heat of formation + Delta-G solvation = 56.582413 kcal Electronic energy + Delta-G solvation = -14969.611522 eV Core-core repulsion = 12517.411621 eV Total energy + Delta-G solvation = -2452.199901 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.98489 -36.82494 -33.97890 -33.29398 -31.46781 -28.93300 -28.06666 -27.01232 -24.32302 -22.77929 -21.23271 -20.40386 -19.30541 -17.12811 -16.74472 -15.77839 -15.02981 -14.73877 -14.49308 -13.96003 -13.63515 -13.41654 -13.11397 -12.84568 -12.72419 -12.52685 -12.39536 -11.88588 -11.36145 -11.11160 -11.00282 -10.20505 -9.82686 -9.75978 -9.73912 -9.51946 -9.20444 -8.50896 -8.29974 -7.90878 -6.02239 -4.00605 2.10210 2.77864 3.29986 3.36964 3.43617 3.50306 4.45650 4.49836 4.60738 4.65657 4.85503 4.98679 5.07467 5.22025 5.29560 5.32959 5.45685 5.65241 5.76501 5.85539 6.12650 6.17816 6.27280 6.38352 6.78033 6.84555 7.10913 7.24479 7.42610 7.61655 7.77792 7.94259 8.28564 8.54704 9.01223 9.60624 11.10973 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.041253 B = 0.005600 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.576809 B = 4998.393871 C = 5244.535950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.169 3.831 3 H 0.086 0.914 4 N -0.679 5.679 5 C 0.075 3.925 6 C -0.010 4.010 7 C -0.521 4.521 8 H 0.071 0.929 9 C 0.068 3.932 10 N -0.905 5.905 11 Si 0.881 3.119 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.264 1.264 15 C 0.232 3.768 16 N -0.478 5.478 17 C -0.030 4.030 18 C -0.071 4.071 19 N -0.462 5.462 20 C 0.070 3.930 21 H 0.067 0.933 22 H 0.068 0.932 23 H 0.054 0.946 24 H 0.348 0.652 25 H 0.062 0.938 26 H 0.025 0.975 27 H 0.015 0.985 28 H 0.021 0.979 29 H 0.263 0.737 30 H 0.166 0.834 31 H 0.170 0.830 32 H 0.075 0.925 33 H 0.089 0.911 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.734 -0.203 -20.631 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.056 3.944 3 H 0.104 0.896 4 N -0.310 5.310 5 C -0.053 4.053 6 C -0.048 4.048 7 C -0.559 4.559 8 H 0.089 0.911 9 C -0.134 4.134 10 N -0.544 5.544 11 Si 0.709 3.291 12 H -0.203 1.203 13 H -0.215 1.215 14 H -0.188 1.188 15 C -0.032 4.032 16 N -0.196 5.196 17 C -0.178 4.178 18 C -0.203 4.203 19 N -0.145 5.145 20 C -0.073 4.073 21 H 0.086 0.914 22 H 0.087 0.913 23 H 0.073 0.927 24 H 0.167 0.833 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.073 0.927 30 H 0.183 0.817 31 H 0.187 0.813 32 H 0.093 0.907 33 H 0.107 0.893 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.279 -0.539 -20.066 20.202 hybrid contribution -0.161 -0.156 -0.316 0.387 sum -2.439 -0.694 -20.382 20.539 Atomic orbital electron populations 1.22446 0.95566 1.03175 1.02181 1.19697 0.92736 0.95724 0.86264 0.89597 1.60409 1.57136 1.10214 1.03270 1.22021 0.98843 0.94950 0.89517 1.19542 0.96549 0.96276 0.92434 1.21056 1.44315 0.97676 0.92871 0.91122 1.24990 0.94963 0.97622 0.95780 1.69916 1.47822 1.35373 1.01281 0.86747 0.79463 0.85766 0.77150 1.20273 1.21512 1.18818 1.23307 1.00695 0.88908 0.90243 1.70217 1.20443 1.12144 1.16760 1.22297 1.04696 0.97909 0.92914 1.22587 1.11076 0.88462 0.98218 1.45285 1.46840 1.07457 1.14909 1.22039 1.02966 0.78110 1.04144 0.91431 0.91290 0.92681 0.83278 0.91916 0.95657 0.96628 0.96047 0.92744 0.81683 0.81275 0.90686 0.89280 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.22 9.14 37.16 0.34 -1.88 16 2 C 0.17 2.46 2.95 -68.87 -0.20 2.26 16 3 H 0.09 1.15 6.40 -51.93 -0.33 0.81 16 4 N -0.68 -12.16 6.22 -107.96 -0.67 -12.83 16 5 C 0.07 1.50 5.42 -3.82 -0.02 1.48 16 6 C -0.01 -0.25 4.30 -27.88 -0.12 -0.37 16 7 C -0.52 -14.98 9.66 -34.44 -0.33 -15.32 16 8 H 0.07 2.16 7.99 -52.48 -0.42 1.74 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -28.16 13.96 55.43 0.77 -27.39 16 11 Si 0.88 22.34 27.47 -169.99 -4.67 17.67 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 13 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 14 H -0.26 -6.49 6.54 56.52 0.37 -6.12 16 15 C 0.23 3.51 6.75 -155.42 -1.05 2.46 16 16 N -0.48 -7.98 11.24 -10.82 -0.12 -8.10 16 17 C -0.03 -0.41 11.87 -17.81 -0.21 -0.62 16 18 C -0.07 -0.82 11.58 -16.56 -0.19 -1.01 16 19 N -0.46 -5.64 3.15 -121.28 -0.38 -6.02 16 20 C 0.07 0.55 10.93 59.85 0.65 1.21 16 21 H 0.07 0.91 8.13 -51.93 -0.42 0.49 16 22 H 0.07 0.87 7.45 -51.93 -0.39 0.49 16 23 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.35 6.26 8.47 -39.29 -0.33 5.93 16 25 H 0.06 1.26 8.06 -51.93 -0.42 0.84 16 26 H 0.03 0.49 7.44 -51.93 -0.39 0.11 16 27 H 0.02 0.38 7.20 -51.93 -0.37 0.01 16 28 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 29 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 30 H 0.17 1.81 8.06 -52.49 -0.42 1.39 16 31 H 0.17 1.31 8.06 -52.48 -0.42 0.89 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.70 6.91 -51.93 -0.36 0.34 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 285.33 15.07 4.30 4.30 Total: -1.00 -33.84 285.33 -7.11 -40.94 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: -5.10 Total: 1.31 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -1.23 Total: -9.89 kcal Atomic # 7 Polarization: -53.94 SS G_CDS: -0.40 Total: -54.34 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.67 Total: 17.67 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.84 -7.11 -40.94 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308651296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.527 kcal (2) G-P(sol) polarization free energy of solvation -33.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds