Wall clock time and date at job start Sun Mar 29 2020 21:30:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46895 * 2 1 4 4 N 1.46897 * 109.47355 * 119.99775 * 2 1 3 5 5 C 1.46901 * 111.00443 * 275.00558 * 4 2 1 6 6 C 1.53003 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47350 * 179.97438 * 6 5 4 8 8 H 1.08004 * 119.99385 * 359.97438 * 7 6 5 9 9 C 1.37866 * 120.00022 * 179.97438 * 7 6 5 10 10 N 1.31522 * 120.00128 * 179.97438 * 9 7 6 11 11 Si 1.86797 * 120.00246 * 359.97438 * 9 7 6 12 12 H 1.48503 * 109.47187 * 89.99902 * 11 9 7 13 13 H 1.48500 * 109.47517 * 210.00094 * 11 9 7 14 14 H 1.48500 * 109.47124 * 330.00031 * 11 9 7 15 15 C 1.50692 * 109.47289 * 240.00232 * 2 1 3 16 16 N 1.30501 * 125.64779 * 285.02345 * 15 2 1 17 17 C 1.34134 * 109.25535 * 179.97438 * 16 15 2 18 18 C 1.34668 * 108.01972 * 0.02562 * 17 16 15 19 19 N 1.35044 * 125.65329 * 105.02330 * 15 2 1 20 20 C 1.46498 * 126.39523 * 359.97438 * 19 15 2 21 21 H 1.08999 * 109.46895 * 179.97438 * 1 2 3 22 22 H 1.09003 * 109.46877 * 299.99694 * 1 2 3 23 23 H 1.08995 * 109.47344 * 60.00223 * 1 2 3 24 24 H 1.00905 * 111.00192 * 38.95400 * 4 2 1 25 25 H 1.09000 * 109.46529 * 299.99891 * 5 4 2 26 26 H 1.09001 * 109.47183 * 59.99581 * 5 4 2 27 27 H 1.09001 * 109.46481 * 299.99836 * 6 5 4 28 28 H 1.08994 * 109.47030 * 59.99372 * 6 5 4 29 29 H 0.96998 * 120.00340 * 180.02562 * 10 9 7 30 30 H 1.08001 * 125.98356 * 179.97438 * 17 16 15 31 31 H 1.08003 * 126.59021 * 180.02562 * 18 17 16 32 32 H 1.09000 * 109.47175 * 269.97755 * 20 19 15 33 33 H 1.09000 * 109.46887 * 29.98127 * 20 19 15 34 34 H 1.08998 * 109.47088 * 149.97524 * 20 19 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.0824 0.2226 2.3469 6 6 2.5963 -0.5328 3.5742 7 6 2.6612 0.4060 4.7512 8 1 2.3659 1.4384 4.6353 9 6 3.0975 -0.0529 5.9759 10 7 3.1547 0.7665 7.0030 11 14 3.6076 -1.8387 6.1764 12 1 5.0578 -1.9748 5.8874 13 1 3.3372 -2.2774 7.5691 14 1 2.8332 -2.6837 5.2322 15 6 2.0323 -0.7103 -1.2304 16 7 2.0267 -2.0017 -1.4187 17 6 2.5477 -2.2752 -2.6241 18 6 2.8896 -1.1091 -3.2045 19 7 2.5629 -0.1161 -2.3209 20 6 2.7525 1.3227 -2.5211 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.4496 -1.4979 1.4101 25 1 2.7588 1.0462 2.1182 26 1 1.0870 0.6163 2.5526 27 1 1.9202 -1.3567 3.8030 28 1 3.5917 -0.9262 3.3683 29 1 3.4620 0.4438 7.8645 30 1 2.6720 -3.2584 -3.0534 31 1 3.3353 -0.9819 -4.1800 32 1 1.8640 1.7443 -2.9910 33 1 2.9176 1.8049 -1.5576 34 1 3.6171 1.4893 -3.1635 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308651296.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:48 Heat of formation + Delta-G solvation = 32.714321 kcal Electronic energy + Delta-G solvation = -14970.646520 eV Core-core repulsion = 12517.411621 eV Total energy + Delta-G solvation = -2453.234899 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.94160 -38.19345 -35.28819 -34.84781 -33.23299 -30.35958 -29.29597 -27.76067 -26.03874 -24.03765 -22.49877 -21.92156 -20.37492 -18.93943 -18.07409 -16.71997 -16.40293 -16.27348 -15.82151 -15.50666 -14.85740 -14.62457 -14.40259 -14.12281 -13.98156 -13.56595 -13.44241 -13.22974 -12.99237 -12.88804 -12.23013 -12.06118 -11.79283 -11.61930 -11.40461 -10.81130 -10.76696 -10.45954 -9.38888 -9.19029 -8.29836 -6.33497 1.16466 1.37217 1.38073 1.51280 1.94393 2.26779 2.36725 3.06137 3.31609 3.54885 3.87217 3.98644 4.17730 4.20786 4.41896 4.46135 4.53631 4.58103 4.68064 4.70893 4.81005 4.88236 4.97912 5.14491 5.29893 5.44126 5.49408 5.63009 5.94017 6.07920 6.24343 6.35686 6.47200 6.74467 7.29266 7.31701 8.86516 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.041253 B = 0.005600 C = 0.005338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.576809 B = 4998.393871 C = 5244.535950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.170 3.830 3 H 0.098 0.902 4 N -0.686 5.686 5 C 0.090 3.910 6 C -0.006 4.006 7 C -0.530 4.530 8 H 0.038 0.962 9 C 0.009 3.991 10 N -0.949 5.949 11 Si 0.948 3.052 12 H -0.270 1.270 13 H -0.282 1.282 14 H -0.251 1.251 15 C 0.206 3.794 16 N -0.519 5.519 17 C -0.064 4.064 18 C -0.052 4.052 19 N -0.461 5.461 20 C 0.061 3.939 21 H 0.056 0.944 22 H 0.067 0.933 23 H 0.074 0.926 24 H 0.346 0.654 25 H 0.061 0.939 26 H 0.029 0.971 27 H 0.017 0.983 28 H 0.016 0.984 29 H 0.267 0.733 30 H 0.181 0.819 31 H 0.210 0.790 32 H 0.095 0.905 33 H 0.086 0.914 34 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.433 -0.647 -22.749 22.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.058 3.942 3 H 0.116 0.884 4 N -0.318 5.318 5 C -0.038 4.038 6 C -0.044 4.044 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.188 4.188 10 N -0.590 5.590 11 Si 0.772 3.228 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.175 1.175 15 C -0.058 4.058 16 N -0.238 5.238 17 C -0.212 4.212 18 C -0.185 4.185 19 N -0.143 5.143 20 C -0.080 4.080 21 H 0.075 0.925 22 H 0.086 0.914 23 H 0.093 0.907 24 H 0.165 0.835 25 H 0.079 0.921 26 H 0.047 0.953 27 H 0.035 0.965 28 H 0.034 0.966 29 H 0.076 0.924 30 H 0.198 0.802 31 H 0.227 0.773 32 H 0.114 0.886 33 H 0.105 0.895 34 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.985 -0.958 -22.209 22.318 hybrid contribution -0.249 0.066 0.250 0.359 sum -2.234 -0.892 -21.959 22.090 Atomic orbital electron populations 1.22338 0.94291 1.02747 1.03056 1.19745 0.93776 0.95884 0.84827 0.88418 1.60300 1.58040 1.09998 1.03438 1.21679 0.98680 0.94556 0.88890 1.19436 0.96437 0.95730 0.92761 1.21380 1.43665 0.97127 0.94636 0.94321 1.25901 0.95071 1.02349 0.95448 1.70049 1.49198 1.37696 1.02012 0.85687 0.79377 0.80155 0.77588 1.19534 1.20753 1.17492 1.23183 1.02417 0.88938 0.91265 1.70116 1.21673 1.13453 1.18558 1.22740 1.05996 0.99721 0.92713 1.23210 1.08792 0.87496 0.99003 1.45536 1.45537 1.09177 1.14050 1.22367 1.05096 0.75678 1.04836 0.92487 0.91397 0.90706 0.83537 0.92082 0.95327 0.96458 0.96603 0.92435 0.80221 0.77292 0.88633 0.89505 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.00 9.14 71.98 0.66 -3.34 16 2 C 0.17 4.76 2.95 44.17 0.13 4.89 16 3 H 0.10 2.45 6.40 -2.39 -0.02 2.44 16 4 N -0.69 -24.11 6.22 -495.46 -3.08 -27.19 16 5 C 0.09 3.60 5.42 86.30 0.47 4.07 16 6 C -0.01 -0.28 4.30 29.85 0.13 -0.15 16 7 C -0.53 -30.91 9.66 25.60 0.25 -30.67 16 8 H 0.04 2.43 7.99 -2.91 -0.02 2.41 16 9 C 0.01 0.56 5.47 84.65 0.46 1.02 16 10 N -0.95 -59.98 13.96 21.44 0.30 -59.68 16 11 Si 0.95 45.91 27.47 68.60 1.88 47.80 16 12 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 13 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 14 H -0.25 -11.56 6.54 99.48 0.65 -10.91 16 15 C 0.21 5.93 6.75 138.12 0.93 6.86 16 16 N -0.52 -16.95 11.24 -188.13 -2.11 -19.06 16 17 C -0.06 -1.66 11.87 83.52 0.99 -0.67 16 18 C -0.05 -1.04 11.58 83.09 0.96 -0.08 16 19 N -0.46 -10.05 3.15 -537.62 -1.69 -11.74 16 20 C 0.06 0.77 10.93 127.77 1.40 2.16 16 21 H 0.06 1.50 8.13 -2.39 -0.02 1.48 16 22 H 0.07 1.64 7.45 -2.39 -0.02 1.62 16 23 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 24 H 0.35 12.31 8.47 -89.69 -0.76 11.55 16 25 H 0.06 2.43 8.06 -2.39 -0.02 2.41 16 26 H 0.03 1.11 7.44 -2.39 -0.02 1.09 16 27 H 0.02 0.83 7.20 -2.39 -0.02 0.81 16 28 H 0.02 0.78 7.57 -2.39 -0.02 0.76 16 29 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 30 H 0.18 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.21 2.30 8.06 -2.91 -0.02 2.28 16 32 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.09 1.14 6.91 -2.39 -0.02 1.12 16 34 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 Total: -1.00 -73.42 285.33 1.94 -71.49 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: 0.26 Total: 14.30 kcal Atomic # 6 Polarization: -22.29 SS G_CDS: 6.38 Total: -15.91 kcal Atomic # 7 Polarization: -111.08 SS G_CDS: -6.59 Total: -117.67 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.88 Total: 47.80 kcal Total: -73.42 1.94 -71.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308651296.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.204 kcal (2) G-P(sol) polarization free energy of solvation -73.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds