Wall clock time and date at job start Sun Mar 29 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08996 * 109.47500 * 2 1 4 4 N 1.46903 * 109.46776 * 120.00370 * 2 1 3 5 5 C 1.46902 * 110.99636 * 274.99682 * 4 2 1 6 6 C 1.52996 * 109.47316 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47260 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.46971 * 180.02562 * 7 6 5 9 9 H 1.07992 * 120.00369 * 359.97438 * 8 7 6 10 10 C 1.37881 * 119.99980 * 180.02562 * 8 7 6 11 11 N 1.31517 * 119.99976 * 0.02562 * 10 8 7 12 12 Si 1.86799 * 120.00150 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46993 * 0.02562 * 12 10 8 14 14 H 1.48496 * 109.47160 * 120.00120 * 12 10 8 15 15 H 1.48498 * 109.46964 * 240.00309 * 12 10 8 16 16 C 1.50704 * 109.46901 * 239.99546 * 2 1 3 17 17 N 1.30498 * 125.64969 * 264.97694 * 16 2 1 18 18 C 1.34129 * 109.25189 * 180.02562 * 17 16 2 19 19 C 1.34665 * 108.02445 * 359.97438 * 18 17 16 20 20 N 1.35038 * 125.64689 * 85.00420 * 16 2 1 21 21 H 0.97000 * 126.40248 * 359.97438 * 20 16 2 22 22 H 1.08998 * 109.46870 * 300.00508 * 1 2 3 23 23 H 1.09005 * 109.46416 * 60.00013 * 1 2 3 24 24 H 1.08996 * 109.47500 * 179.97438 * 1 2 3 25 25 H 1.00897 * 111.00153 * 151.04569 * 4 2 1 26 26 H 1.09007 * 109.46802 * 299.99814 * 5 4 2 27 27 H 1.09001 * 109.47354 * 59.99814 * 5 4 2 28 28 H 1.09002 * 109.47218 * 300.00264 * 6 5 4 29 29 H 1.09009 * 109.47257 * 59.99936 * 6 5 4 30 30 H 1.09001 * 109.47316 * 299.99471 * 7 6 5 31 31 H 1.09001 * 109.47250 * 60.00384 * 7 6 5 32 32 H 0.96994 * 119.99949 * 179.97438 * 11 10 8 33 33 H 1.08008 * 125.98816 * 180.02562 * 18 17 16 34 34 H 1.07999 * 126.59397 * 180.25953 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5961 -0.5329 3.5742 7 6 2.6621 0.4203 4.7691 8 6 3.1687 -0.3237 5.9778 9 1 3.4182 -1.3716 5.9015 10 6 3.3127 0.3334 7.1814 11 7 3.0074 1.6092 7.2748 12 14 3.9399 -0.5890 8.6798 13 1 4.2093 -2.0027 8.3139 14 1 5.1934 0.0445 9.1621 15 1 2.9161 -0.5418 9.7545 16 6 2.0324 -0.7105 -1.2305 17 7 2.3734 -1.9684 -1.2964 18 6 2.7715 -2.2538 -2.5450 19 6 2.6730 -1.1303 -3.2809 20 7 2.2046 -0.1508 -2.4473 21 1 2.0288 0.7727 -2.6862 22 1 -0.3633 0.5139 0.8899 23 1 -0.3632 0.5139 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 2.9173 -1.1206 1.0288 26 1 2.7590 1.0461 2.1182 27 1 1.0871 0.6163 2.5525 28 1 1.9201 -1.3567 3.8030 29 1 3.5917 -0.9264 3.3684 30 1 3.3385 1.2438 4.5401 31 1 1.6668 0.8141 4.9752 32 1 3.1084 2.0713 8.1216 33 1 3.1109 -3.2163 -2.8986 34 1 2.9135 -1.0236 -4.3283 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308662021.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:54 Heat of formation + Delta-G solvation = 18.757919 kcal Electronic energy + Delta-G solvation = -14568.678625 eV Core-core repulsion = 12114.838531 eV Total energy + Delta-G solvation = -2453.840094 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.97587 -38.20972 -35.77081 -33.84147 -33.43590 -31.16017 -29.45686 -27.80065 -24.95183 -23.39892 -22.47710 -21.90190 -20.99991 -18.93444 -18.42057 -16.92786 -16.54324 -16.12753 -15.88713 -15.59971 -14.68051 -14.62820 -14.41630 -14.30202 -13.72094 -13.42905 -13.21919 -12.86119 -12.76305 -12.46245 -12.23513 -12.15782 -11.50788 -11.37144 -11.10072 -10.98827 -10.91771 -10.54268 -9.42207 -9.30446 -8.19279 -6.29686 1.11933 1.40797 1.41104 1.55058 2.15848 2.20482 2.42467 3.13832 3.17480 3.47465 4.00578 4.21465 4.27327 4.36152 4.46859 4.53100 4.69785 4.71070 4.77505 4.91400 4.99920 5.13059 5.18029 5.24142 5.32937 5.54137 5.77091 5.84163 5.87541 6.04616 6.28979 6.40799 6.52849 6.86962 7.21584 7.39324 8.92824 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.058570 B = 0.004238 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 477.945689 B = 6605.629712 C = 6857.682334 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.170 3.830 3 H 0.070 0.930 4 N -0.677 5.677 5 C 0.073 3.927 6 C -0.093 4.093 7 C 0.026 3.974 8 C -0.543 4.543 9 H 0.057 0.943 10 C 0.000 4.000 11 N -0.933 5.933 12 Si 0.965 3.035 13 H -0.264 1.264 14 H -0.277 1.277 15 H -0.277 1.277 16 C 0.188 3.812 17 N -0.513 5.513 18 C -0.066 4.066 19 C -0.035 4.035 20 N -0.554 5.554 21 H 0.434 0.566 22 H 0.064 0.936 23 H 0.076 0.924 24 H 0.050 0.950 25 H 0.345 0.655 26 H 0.027 0.973 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.045 0.955 30 H -0.007 1.007 31 H -0.005 1.005 32 H 0.264 0.736 33 H 0.182 0.818 34 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.284 -1.263 -22.199 22.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.058 3.942 3 H 0.087 0.913 4 N -0.310 5.310 5 C -0.056 4.056 6 C -0.131 4.131 7 C -0.011 4.011 8 C -0.581 4.581 9 H 0.075 0.925 10 C -0.198 4.198 11 N -0.573 5.573 12 Si 0.789 3.211 13 H -0.188 1.188 14 H -0.202 1.202 15 H -0.202 1.202 16 C -0.077 4.077 17 N -0.233 5.233 18 C -0.214 4.214 19 C -0.169 4.169 20 N -0.159 5.159 21 H 0.274 0.726 22 H 0.083 0.917 23 H 0.095 0.905 24 H 0.070 0.930 25 H 0.164 0.836 26 H 0.045 0.955 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.011 0.989 31 H 0.014 0.986 32 H 0.073 0.927 33 H 0.199 0.801 34 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -2.920 -1.971 -21.282 21.572 hybrid contribution 1.055 1.162 -0.020 1.570 sum -1.865 -0.809 -21.303 21.399 Atomic orbital electron populations 1.21765 0.92259 1.02369 1.02517 1.19868 0.96652 0.94231 0.83423 0.91274 1.60440 1.34490 1.32682 1.03357 1.21943 1.00387 0.93292 0.89978 1.21367 0.99530 0.98390 0.93817 1.18968 0.95061 0.94363 0.92755 1.21736 1.43652 0.96823 0.95928 0.92518 1.25968 0.95679 0.95801 1.02341 1.70095 1.49907 1.10635 1.26691 0.85398 0.78042 0.78949 0.78663 1.18835 1.20228 1.20210 1.23199 1.05349 0.90456 0.88715 1.70188 1.17285 1.13178 1.22654 1.22862 1.07932 1.00771 0.89813 1.23360 1.06050 0.88434 0.99093 1.43225 1.50130 1.13607 1.08953 0.72556 0.91659 0.90512 0.93035 0.83581 0.95500 0.91037 0.93042 0.93643 0.98867 0.98629 0.92749 0.80118 0.76541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 9.40 71.98 0.68 -2.24 16 2 C 0.17 4.20 3.16 44.17 0.14 4.34 16 3 H 0.07 1.50 7.80 -2.39 -0.02 1.48 16 4 N -0.68 -21.40 6.20 -495.42 -3.07 -24.47 16 5 C 0.07 2.57 5.48 86.30 0.47 3.04 16 6 C -0.09 -4.06 5.41 30.59 0.17 -3.89 16 7 C 0.03 1.42 4.97 29.85 0.15 1.57 16 8 C -0.54 -32.05 9.11 25.60 0.23 -31.81 16 9 H 0.06 3.26 7.74 -2.91 -0.02 3.23 16 10 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 11 N -0.93 -57.56 13.29 21.45 0.28 -57.27 16 12 Si 0.96 45.35 29.54 68.60 2.03 47.37 16 13 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 14 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 15 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 16 C 0.19 4.54 6.90 138.13 0.95 5.49 16 17 N -0.51 -14.83 10.70 -188.13 -2.01 -16.84 16 18 C -0.07 -1.45 11.87 83.52 0.99 -0.46 16 19 C -0.03 -0.52 12.04 83.08 1.00 0.48 16 20 N -0.55 -8.82 6.15 -186.27 -1.15 -9.96 16 21 H 0.43 3.78 8.96 -92.71 -0.83 2.95 16 22 H 0.06 1.50 7.45 -2.39 -0.02 1.48 16 23 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 24 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 25 H 0.35 11.46 8.05 -89.70 -0.72 10.74 16 26 H 0.03 0.92 8.06 -2.38 -0.02 0.90 16 27 H 0.07 2.48 7.44 -2.39 -0.02 2.47 16 28 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.04 1.96 8.14 -2.38 -0.02 1.94 16 30 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 31 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 32 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 33 H 0.18 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.22 1.21 8.06 -2.91 -0.02 1.19 16 Total: -1.00 -72.06 289.76 0.86 -71.19 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -0.46 Total: 13.02 kcal Atomic # 6 Polarization: -28.28 SS G_CDS: 5.24 Total: -23.04 kcal Atomic # 7 Polarization: -102.60 SS G_CDS: -5.94 Total: -108.55 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.37 kcal Total: -72.06 0.86 -71.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308662021.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.950 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds