Wall clock time and date at job start Sun Mar 29 2020 21:47:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.47479 * 110.99807 * 74.03005 * 10 9 7 12 12 C 1.53513 * 87.93098 * 138.70399 * 11 10 9 13 13 C 1.53001 * 114.16836 * 220.32563 * 12 11 10 14 14 C 1.53005 * 109.47455 * 273.84031 * 13 12 11 15 15 C 1.52997 * 109.47054 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47636 * 59.99965 * 15 14 13 17 17 C 1.53005 * 109.46928 * 300.00112 * 16 15 14 18 18 C 1.53001 * 109.46794 * 153.84042 * 13 12 11 19 19 C 1.47483 * 110.99717 * 169.99804 * 10 9 7 20 20 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 21 21 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 22 22 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 23 23 H 1.09005 * 113.47355 * 253.46796 * 11 10 9 24 24 H 1.09001 * 113.48166 * 23.93656 * 11 10 9 25 25 H 1.09004 * 114.34366 * 87.63509 * 12 11 10 26 26 H 1.09003 * 109.47223 * 33.84110 * 13 12 11 27 27 H 1.09003 * 109.46970 * 300.00234 * 14 13 12 28 28 H 1.09003 * 109.46694 * 60.00120 * 14 13 12 29 29 H 1.09003 * 109.47145 * 299.99786 * 15 14 13 30 30 H 1.09007 * 109.46822 * 180.02562 * 15 14 13 31 31 H 1.08988 * 109.47189 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47000 * 59.99732 * 16 15 14 33 33 H 1.09003 * 109.46970 * 299.99638 * 17 16 15 34 34 H 1.09003 * 109.46694 * 179.97438 * 17 16 15 35 35 H 1.09002 * 109.47517 * 299.99724 * 18 13 12 36 36 H 1.08997 * 109.47137 * 60.00511 * 18 13 12 37 37 H 1.08998 * 113.47981 * 336.06662 * 19 10 9 38 38 H 1.09002 * 113.47449 * 106.53233 * 19 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 2.8370 -3.7713 1.3232 12 6 2.6863 -5.2897 1.1549 13 6 2.2639 -6.0224 2.4299 14 6 3.5047 -6.3595 3.2593 15 6 3.0823 -7.0927 4.5340 16 6 2.3518 -8.3843 4.1613 17 6 1.1110 -8.0472 3.3319 18 6 1.5331 -7.3139 2.0576 19 6 1.5184 -4.8986 0.2386 20 1 -0.4850 0.8401 0.0004 21 1 0.6247 -2.5571 0.8897 22 1 0.6240 -2.5568 -0.8903 23 1 3.8746 -3.4384 1.3512 24 1 2.2406 -3.3635 2.1394 25 1 3.5177 -5.7693 0.6383 26 1 1.5998 -5.3841 3.0127 27 1 4.1689 -6.9978 2.6765 28 1 4.0254 -5.4393 3.5246 29 1 2.4180 -6.4548 5.1169 30 1 3.9663 -7.3325 5.1251 31 1 2.0513 -8.9068 5.0693 32 1 3.0161 -9.0222 3.5783 33 1 0.4466 -7.4092 3.9148 34 1 0.5908 -8.9674 3.0660 35 1 0.6491 -7.0738 1.4668 36 1 2.1972 -7.9522 1.4749 37 1 0.5701 -4.7916 0.7653 38 1 1.4384 -5.5211 -0.6526 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334528604.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:47:04 Heat of formation + Delta-G solvation = -19.172954 kcal Electronic energy + Delta-G solvation = -15582.389712 eV Core-core repulsion = 13230.445156 eV Total energy + Delta-G solvation = -2351.944557 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.28090 -38.73670 -35.15484 -32.91687 -31.58401 -30.27833 -27.21015 -26.55471 -24.18156 -23.23672 -22.12359 -20.64927 -20.30840 -18.56073 -16.98372 -16.66135 -16.20011 -15.64463 -15.31340 -14.97013 -14.82996 -14.30089 -14.13259 -13.71798 -13.53785 -13.11275 -12.97113 -12.84148 -12.71494 -12.43102 -12.26305 -11.93573 -11.86924 -11.59323 -11.48012 -11.26603 -11.18241 -10.73356 -10.68995 -10.65291 -9.58366 -8.26855 -6.38213 1.37211 1.39367 1.51374 2.36712 3.05707 3.38630 3.45381 3.73569 3.97712 4.06526 4.15190 4.44099 4.47650 4.49449 4.59792 4.67737 4.70314 4.72178 4.75442 4.80008 4.84035 4.87770 4.97422 4.99892 5.08795 5.22600 5.26514 5.32803 5.36359 5.44945 5.47679 5.52352 5.56158 5.68948 5.75446 6.11590 6.44147 6.77084 7.32042 8.85138 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.049229 B = 0.005463 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.637909 B = 5124.618155 C = 5303.230771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.002 3.998 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.265 1.265 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.058 0.942 9 C 0.176 3.824 10 N -0.494 5.494 11 C 0.018 3.982 12 C -0.085 4.085 13 C -0.071 4.071 14 C -0.109 4.109 15 C -0.119 4.119 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.110 4.110 19 C -0.001 4.001 20 H 0.266 0.734 21 H -0.028 1.028 22 H -0.001 1.001 23 H 0.071 0.929 24 H 0.045 0.955 25 H 0.109 0.891 26 H 0.050 0.950 27 H 0.071 0.929 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.405 -16.240 8.310 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.574 5.574 2 C -0.196 4.196 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.190 1.190 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.076 0.924 9 C 0.049 3.951 10 N -0.216 5.216 11 C -0.112 4.112 12 C -0.104 4.104 13 C -0.090 4.090 14 C -0.147 4.147 15 C -0.157 4.157 16 C -0.153 4.153 17 C -0.157 4.157 18 C -0.147 4.147 19 C -0.130 4.130 20 H 0.075 0.925 21 H -0.010 1.010 22 H 0.017 0.983 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.637 -15.984 7.680 18.608 hybrid contribution -0.752 1.314 0.459 1.582 sum 4.885 -14.670 8.138 17.473 Atomic orbital electron populations 1.70088 1.07804 1.28097 1.51408 1.25974 0.95819 1.03414 0.94426 0.85329 0.78501 0.77866 0.78618 1.19504 1.18976 1.20339 1.21400 0.93445 0.91314 1.50775 0.92368 1.19863 0.91052 0.90591 0.93604 1.68824 1.22041 1.02265 1.28483 1.23585 1.00024 0.96206 0.91354 1.22749 0.97873 0.93616 0.96143 1.21084 0.97383 0.96346 0.94189 1.21520 0.96533 1.00186 0.96423 1.21538 1.00357 0.96833 0.96923 1.21522 0.96767 0.97105 0.99905 1.21535 0.97871 1.00114 0.96141 1.21504 0.99802 0.95578 0.97822 1.23790 0.96619 0.93037 0.99536 0.92499 1.01014 0.98336 0.91073 0.93680 0.87313 0.93161 0.90999 0.92658 0.92925 0.91015 0.91328 0.91358 0.92970 0.91080 0.92820 0.91011 0.93219 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.84 13.29 21.45 0.28 -57.56 16 2 C 0.00 0.11 5.46 84.66 0.46 0.57 16 3 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.53 -31.76 8.95 25.60 0.23 -31.53 16 8 H 0.06 3.43 7.81 -2.91 -0.02 3.41 16 9 C 0.18 9.99 4.59 85.55 0.39 10.39 16 10 N -0.49 -23.01 6.40 -932.46 -5.97 -28.98 16 11 C 0.02 0.70 6.88 83.57 0.57 1.27 16 12 C -0.09 -2.59 3.45 -10.45 -0.04 -2.63 16 13 C -0.07 -1.78 2.00 -10.79 -0.02 -1.80 16 14 C -0.11 -2.29 5.20 30.59 0.16 -2.13 16 15 C -0.12 -2.13 5.92 30.59 0.18 -1.95 16 16 C -0.12 -1.84 5.92 30.60 0.18 -1.66 16 17 C -0.12 -2.17 5.92 30.58 0.18 -1.99 16 18 C -0.11 -2.34 5.01 30.58 0.15 -2.19 16 19 C 0.00 -0.03 6.36 83.57 0.53 0.51 16 20 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 21 H -0.03 -1.68 7.56 -2.38 -0.02 -1.70 16 22 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 23 H 0.07 2.75 8.14 -2.38 -0.02 2.73 16 24 H 0.04 1.94 7.49 -2.39 -0.02 1.92 16 25 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 26 H 0.05 1.46 7.90 -2.39 -0.02 1.44 16 27 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.11 8.14 -2.38 -0.02 1.09 16 31 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.05 1.25 7.48 -2.39 -0.02 1.23 16 36 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.92 7.73 -2.39 -0.02 1.91 16 38 H 0.08 2.82 8.14 -2.39 -0.02 2.80 16 Total: -1.00 -65.75 296.35 0.31 -65.44 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: 0.98 Total: 6.76 kcal Atomic # 6 Polarization: -36.13 SS G_CDS: 2.99 Total: -33.14 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: -5.69 Total: -86.54 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -65.75 0.31 -65.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334528604.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.269 kcal (2) G-P(sol) polarization free energy of solvation -65.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.442 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds