Wall clock time and date at job start Sun Mar 29 2020 22:35:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08995 * 110.53039 * 2 1 4 4 C 1.54959 * 110.48307 * 237.39238 * 2 1 3 5 5 C 1.55074 * 102.85547 * 203.82913 * 4 2 1 6 6 C 1.53465 * 103.98448 * 37.24572 * 5 4 2 7 7 C 1.53451 * 110.78173 * 98.33365 * 6 5 4 8 8 C 1.54587 * 104.75322 * 120.37688 * 7 6 5 9 9 N 1.48634 * 104.62265 * 336.26974 * 8 7 6 10 10 C 1.46900 * 110.99807 * 158.60984 * 9 8 7 11 11 C 1.50700 * 109.47228 * 69.87783 * 10 9 8 12 12 H 1.08006 * 119.99856 * 359.97438 * 11 10 9 13 13 C 1.37870 * 120.00251 * 179.97438 * 11 10 9 14 14 N 1.31519 * 120.00197 * 0.02562 * 13 11 10 15 15 Si 1.86804 * 120.00168 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46767 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.47051 * 120.00118 * 15 13 11 18 18 H 1.48501 * 109.47483 * 240.00255 * 15 13 11 19 19 C 1.48754 * 104.34989 * 38.98179 * 9 8 7 20 20 C 1.53060 * 107.45640 * 336.90389 * 6 5 4 21 21 H 1.08996 * 109.47554 * 297.40558 * 1 2 3 22 22 H 1.09006 * 109.46782 * 57.40765 * 1 2 3 23 23 H 1.09000 * 109.46880 * 177.40008 * 1 2 3 24 24 H 1.09002 * 110.73893 * 322.17539 * 4 2 1 25 25 H 1.09001 * 110.73196 * 85.30840 * 4 2 1 26 26 H 1.09007 * 110.52927 * 278.61836 * 5 4 2 27 27 H 1.09004 * 110.52631 * 155.87498 * 5 4 2 28 28 H 1.09003 * 110.38454 * 1.56269 * 7 6 5 29 29 H 1.09000 * 110.47838 * 239.24277 * 7 6 5 30 30 H 1.08997 * 110.40623 * 95.06038 * 8 7 6 31 31 H 1.09005 * 110.40537 * 217.48686 * 8 7 6 32 32 H 1.09004 * 109.46922 * 189.87679 * 10 9 8 33 33 H 1.08997 * 109.47708 * 309.87791 * 10 9 8 34 34 H 0.96993 * 119.99821 * 179.97438 * 14 13 11 35 35 H 1.09004 * 110.44572 * 202.54471 * 19 9 8 36 36 H 1.08998 * 110.55510 * 80.06600 * 19 9 8 37 37 H 1.09000 * 110.09537 * 118.98658 * 20 6 5 38 38 H 1.08993 * 110.09854 * 240.52072 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 6 2.0723 -0.7823 -1.2228 5 6 3.4886 -1.2102 -0.7583 6 6 3.3078 -1.5365 0.7304 7 6 3.1471 -3.0480 0.9408 8 6 4.3184 -3.4430 1.8691 9 7 5.3410 -2.3862 1.6532 10 6 6.2724 -2.3155 2.7870 11 6 7.1438 -3.5450 2.7987 12 1 7.0180 -4.3033 2.0400 13 6 8.1016 -3.7019 3.7779 14 7 8.2545 -2.7788 4.7021 15 14 9.1812 -5.2263 3.7928 16 1 8.8117 -6.1056 2.6546 17 1 10.6055 -4.8254 3.6660 18 1 8.9851 -5.9594 5.0692 19 6 4.5533 -1.1303 1.5314 20 6 2.0706 -0.7796 1.2194 21 1 -0.3634 0.4730 0.9123 22 1 -0.3633 0.5536 -0.8659 23 1 -0.3633 -1.0266 -0.0466 24 1 1.4531 -1.6555 -1.4279 25 1 2.1292 -0.1369 -2.0994 26 1 4.1967 -0.3914 -0.8868 27 1 3.8200 -2.0927 -1.3056 28 1 3.2230 -3.5740 -0.0109 29 1 2.1927 -3.2670 1.4196 30 1 3.9930 -3.4503 2.9093 31 1 4.7146 -4.4185 1.5870 32 1 6.8976 -1.4280 2.6889 33 1 5.7082 -2.2613 3.7180 34 1 8.9281 -2.8894 5.3912 35 1 5.1233 -0.3741 0.9916 36 1 4.2686 -0.7601 2.5163 37 1 1.3187 -1.4828 1.5776 38 1 2.3452 -0.0878 2.0156 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336559931.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:35:21 Heat of formation + Delta-G solvation = -20.019714 kcal Electronic energy + Delta-G solvation = -15790.911881 eV Core-core repulsion = 13438.930605 eV Total energy + Delta-G solvation = -2351.981275 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.69403 -36.28076 -32.98518 -31.35298 -29.60667 -28.57167 -26.93173 -25.26111 -22.87873 -22.11495 -20.11130 -19.92438 -18.52587 -16.23982 -15.51741 -15.07444 -14.50185 -14.30887 -13.80108 -13.55576 -13.15638 -12.91354 -12.41812 -12.29227 -12.04915 -11.78117 -11.28173 -11.14606 -10.97445 -10.78771 -10.64441 -10.61870 -10.42937 -10.33344 -10.17436 -9.97829 -9.93925 -9.71105 -9.09661 -8.40643 -7.30404 -5.99900 -4.00897 3.32768 3.39870 3.45346 4.45517 4.60107 4.72701 4.77257 5.18913 5.20398 5.34722 5.35910 5.48388 5.55497 5.59713 5.66117 5.77953 5.79789 5.91402 5.97801 6.00799 6.12283 6.20984 6.21121 6.29031 6.33454 6.49464 6.49844 6.52958 6.64931 6.71273 6.78547 7.24276 7.35336 7.81857 8.04701 8.23553 8.56173 9.07512 9.63428 11.11395 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.063772 B = 0.005662 C = 0.005543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.956633 B = 4943.664166 C = 5049.758014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.103 4.103 6 C -0.066 4.066 7 C -0.113 4.113 8 C 0.046 3.954 9 N -0.508 5.508 10 C 0.181 3.819 11 C -0.504 4.504 12 H 0.063 0.937 13 C 0.054 3.946 14 N -0.900 5.900 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.285 1.285 19 C 0.042 3.958 20 C -0.109 4.109 21 H 0.051 0.949 22 H 0.050 0.950 23 H 0.053 0.947 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.034 0.966 31 H 0.074 0.926 32 H 0.029 0.971 33 H -0.008 1.008 34 H 0.260 0.740 35 H 0.069 0.931 36 H 0.033 0.967 37 H 0.064 0.936 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.743 4.030 -8.831 16.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.140 4.140 6 C -0.067 4.067 7 C -0.151 4.151 8 C -0.082 4.082 9 N -0.232 5.232 10 C 0.056 3.944 11 C -0.542 4.542 12 H 0.081 0.919 13 C -0.147 4.147 14 N -0.540 5.540 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.211 1.211 19 C -0.086 4.086 20 C -0.147 4.147 21 H 0.071 0.929 22 H 0.069 0.931 23 H 0.072 0.928 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.052 0.948 31 H 0.092 0.908 32 H 0.047 0.953 33 H 0.010 0.990 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -13.285 3.963 -9.132 16.601 hybrid contribution 0.278 -0.576 1.029 1.211 sum -13.008 3.387 -8.104 15.695 Atomic orbital electron populations 1.21801 0.95475 1.01559 1.01173 1.22027 0.94949 0.99236 0.95442 0.91084 1.22633 0.96905 0.99329 0.96944 1.22362 0.95968 1.01212 0.94470 1.21321 0.94531 0.95316 0.95490 1.22515 0.98102 0.94472 1.00034 1.22945 0.91133 0.97395 0.96766 1.65507 1.12939 1.01129 1.43611 1.19875 0.90694 0.98075 0.85789 1.21186 1.16934 1.04826 1.11301 0.91917 1.24998 0.97448 0.96739 0.95517 1.69974 1.34621 1.34041 1.15371 0.86448 0.80278 0.82951 0.77799 1.19654 1.21013 1.21133 1.23161 0.93039 0.94843 0.97580 1.22361 0.96491 0.98604 0.97196 0.92948 0.93062 0.92750 0.91794 0.92179 0.91632 0.91395 0.91645 0.92284 0.94783 0.90785 0.95294 0.99019 0.93034 0.91225 0.94869 0.91763 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.33 9.12 37.16 0.34 -0.99 16 2 C -0.10 -1.08 3.47 -88.80 -0.31 -1.38 16 3 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.12 -1.34 6.34 -24.60 -0.16 -1.49 16 5 C -0.10 -1.39 5.92 -25.39 -0.15 -1.54 16 6 C -0.07 -0.99 0.88 -153.71 -0.14 -1.13 16 7 C -0.11 -1.78 6.30 -25.66 -0.16 -1.94 16 8 C 0.05 0.92 5.99 -2.03 -0.01 0.91 16 9 N -0.51 -11.44 5.36 -231.57 -1.24 -12.68 16 10 C 0.18 4.91 4.57 -4.98 -0.02 4.89 16 11 C -0.50 -14.58 8.82 -34.44 -0.30 -14.89 16 12 H 0.06 1.81 7.62 -52.48 -0.40 1.41 16 13 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 14 N -0.90 -27.32 13.29 55.43 0.74 -26.58 16 15 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 16 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 19 C 0.04 0.79 5.55 -2.51 -0.01 0.78 16 20 C -0.11 -1.40 5.70 -25.92 -0.15 -1.55 16 21 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 22 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.05 0.50 8.12 -51.93 -0.42 0.08 16 24 H 0.06 0.69 8.03 -51.93 -0.42 0.27 16 25 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 0.90 7.45 -51.93 -0.39 0.51 16 27 H 0.07 0.95 7.37 -51.93 -0.38 0.57 16 28 H 0.06 0.98 7.28 -51.93 -0.38 0.60 16 29 H 0.06 0.83 7.16 -51.93 -0.37 0.46 16 30 H 0.03 0.71 7.81 -51.93 -0.41 0.31 16 31 H 0.07 1.53 7.96 -51.93 -0.41 1.12 16 32 H 0.03 0.84 8.13 -51.93 -0.42 0.41 16 33 H -0.01 -0.23 7.88 -51.93 -0.41 -0.64 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.07 1.28 7.42 -51.93 -0.39 0.89 16 36 H 0.03 0.64 7.35 -51.93 -0.38 0.26 16 37 H 0.06 0.80 6.84 -51.93 -0.36 0.44 16 38 H 0.06 0.84 7.36 -51.93 -0.38 0.45 16 LS Contribution 292.29 15.07 4.40 4.40 Total: -1.00 -30.04 292.29 -9.03 -39.07 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -6.74 Total: -4.35 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: -1.17 Total: -16.88 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: -0.51 Total: -39.26 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.04 -9.03 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336559931.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.047 kcal (2) G-P(sol) polarization free energy of solvation -30.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds