Wall clock time and date at job start Sun Mar 29 2020 21:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.46828 * 270.00028 * 3 2 1 5 5 H 1.48494 * 109.47178 * 29.99723 * 3 2 1 6 6 H 1.48500 * 109.47075 * 149.99970 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00461 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99611 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46735 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 N 1.46894 * 109.47515 * 180.02562 * 11 10 9 13 13 C 1.47948 * 111.00229 * 290.81853 * 12 11 10 14 14 C 1.55124 * 104.96569 * 213.84688 * 13 12 11 15 15 C 1.53944 * 101.49834 * 35.80194 * 14 13 12 16 16 C 1.52517 * 115.76707 * 94.96121 * 15 14 13 17 17 C 1.54013 * 86.68516 * 93.30431 * 16 15 14 18 18 C 1.52511 * 115.78697 * 196.43388 * 15 14 13 19 19 C 1.47751 * 111.00467 * 169.99777 * 12 11 10 20 20 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 21 21 H 1.09001 * 109.46797 * 60.00256 * 9 7 2 22 22 H 1.08992 * 109.47518 * 300.00254 * 9 7 2 23 23 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 25 25 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 26 26 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 27 27 H 1.09000 * 110.34390 * 332.72119 * 13 12 11 28 28 H 1.09005 * 110.34339 * 94.97249 * 13 12 11 29 29 H 1.09004 * 111.02265 * 277.75119 * 14 13 12 30 30 H 1.09003 * 111.05860 * 153.87638 * 14 13 12 31 31 H 1.09002 * 113.68299 * 207.75258 * 16 15 14 32 32 H 1.09008 * 113.68180 * 338.86084 * 16 15 14 33 33 H 1.09000 * 113.58132 * 269.86510 * 17 16 15 34 34 H 1.08999 * 113.57476 * 139.08115 * 17 16 15 35 35 H 1.09002 * 113.67753 * 21.16836 * 18 15 14 36 36 H 1.09003 * 113.67566 * 152.25931 * 18 15 14 37 37 H 1.08994 * 109.98918 * 243.49616 * 19 12 11 38 38 H 1.09005 * 109.98066 * 4.79354 * 19 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0017 10 6 2.2453 -3.6620 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4349 -6.1036 0.0024 13 6 3.1526 -6.1882 -1.2886 14 6 3.3884 -7.7042 -1.5173 15 6 2.0992 -8.3072 -0.9308 16 6 0.9819 -8.5844 -1.9313 17 6 1.5521 -10.0112 -2.0370 18 6 2.1428 -9.8018 -0.6301 19 6 1.7466 -7.3888 0.2425 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5575 -0.8880 22 1 0.6247 -2.5564 0.8919 23 1 2.8714 -3.6047 -0.8890 24 1 2.8726 -3.6039 0.8910 25 1 0.8541 -5.0447 0.8922 26 1 0.8534 -5.0451 -0.8877 27 1 2.5405 -5.7747 -2.0902 28 1 4.1050 -5.6614 -1.2280 29 1 4.2657 -8.0503 -0.9708 30 1 3.4779 -7.9308 -2.5798 31 1 -0.0163 -8.5431 -1.4955 32 1 1.0674 -8.0095 -2.8535 33 1 2.3076 -10.1224 -2.8148 34 1 0.7857 -10.7852 -2.0770 35 1 3.1526 -10.1961 -0.5160 36 1 1.4742 -10.1060 0.1752 37 1 2.0940 -7.8285 1.1773 38 1 0.6686 -7.2322 0.2821 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388956040.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:41:55 Heat of formation + Delta-G solvation = 3.151398 kcal Electronic energy + Delta-G solvation = -15331.866226 eV Core-core repulsion = 12980.889725 eV Total energy + Delta-G solvation = -2350.976500 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.37213 -36.70120 -33.74909 -31.78599 -29.67479 -28.09800 -25.93877 -25.69974 -22.95183 -22.26168 -20.78167 -19.83843 -18.36813 -16.31111 -15.58977 -15.55483 -15.00663 -14.63152 -14.34813 -13.93298 -13.29275 -12.82441 -12.49725 -12.33725 -12.12295 -11.85066 -11.62326 -11.33874 -11.19390 -10.97675 -10.71731 -10.57423 -10.50643 -10.37449 -10.23834 -10.20847 -9.58569 -9.25799 -8.99863 -8.30087 -7.95150 -5.95407 -3.97191 3.35059 3.40961 3.45139 4.23246 4.38608 4.40505 4.50373 4.59961 4.69565 5.00540 5.22300 5.39681 5.40352 5.43203 5.57927 5.59786 5.67602 5.74536 5.79181 5.81524 5.90145 5.95417 6.06193 6.11532 6.21363 6.27868 6.33734 6.40117 6.76768 6.86104 7.17934 7.35480 7.49851 7.73928 7.89441 8.05558 8.49383 9.10106 9.66540 11.16140 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.066839 B = 0.004584 C = 0.004491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 418.816706 B = 6107.374955 C = 6232.962942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.103 4.103 11 C 0.052 3.948 12 N -0.530 5.530 13 C 0.046 3.954 14 C -0.106 4.106 15 C -0.102 4.102 16 C -0.130 4.130 17 C -0.140 4.140 18 C -0.125 4.125 19 C 0.055 3.945 20 H 0.260 0.740 21 H 0.013 0.987 22 H 0.015 0.985 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.067 0.933 26 H 0.028 0.972 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 -18.925 -3.177 19.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.141 4.141 11 C -0.075 4.075 12 N -0.254 5.254 13 C -0.082 4.082 14 C -0.144 4.144 15 C -0.103 4.103 16 C -0.167 4.167 17 C -0.177 4.177 18 C -0.163 4.163 19 C -0.073 4.073 20 H 0.069 0.931 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.085 0.915 26 H 0.047 0.953 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.094 0.906 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.728 -18.693 -2.761 19.260 hybrid contribution -0.258 0.892 -0.649 1.133 sum 3.470 -17.801 -3.410 18.454 Atomic orbital electron populations 1.69967 1.06066 1.26498 1.51174 1.25028 0.94835 0.99228 0.95431 0.86602 0.79895 0.83510 0.78050 1.20723 1.21253 1.19842 1.21266 0.93058 0.91064 1.50153 0.92687 1.19081 0.94067 0.91486 0.97008 1.21605 0.99077 0.92714 1.00708 1.22480 0.93647 0.91426 0.99961 1.63734 1.27476 1.02775 1.31416 1.23055 0.99336 0.95219 0.90577 1.22407 0.96284 0.95358 1.00356 1.22206 0.96358 0.95146 0.96566 1.22826 0.97903 0.96723 0.99279 1.22871 1.00275 0.97049 0.97502 1.22720 1.01272 0.95085 0.97189 1.22653 0.97508 0.89606 0.97533 0.93082 0.96910 0.96648 0.93634 0.92686 0.91484 0.95339 0.93540 0.90333 0.90615 0.91162 0.90070 0.91453 0.90373 0.91692 0.91364 0.90080 0.90798 0.92880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.29 55.43 0.74 -26.81 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -15.10 9.11 -34.44 -0.31 -15.41 16 8 H 0.05 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 10 C -0.10 -2.25 5.20 -26.73 -0.14 -2.39 16 11 C 0.05 0.97 4.57 -3.83 -0.02 0.95 16 12 N -0.53 -8.51 5.17 -231.54 -1.20 -9.71 16 13 C 0.05 0.66 5.80 -2.12 -0.01 0.65 16 14 C -0.11 -1.21 6.24 -25.12 -0.16 -1.37 16 15 C -0.10 -1.13 0.94 -154.48 -0.14 -1.28 16 16 C -0.13 -1.35 7.31 -26.45 -0.19 -1.55 16 17 C -0.14 -1.21 7.96 -25.70 -0.20 -1.42 16 18 C -0.12 -1.15 7.39 -26.45 -0.20 -1.34 16 19 C 0.05 0.73 6.35 -3.30 -0.02 0.71 16 20 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 21 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 22 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 23 H 0.04 0.98 7.49 -51.93 -0.39 0.59 16 24 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 25 H 0.07 1.24 8.04 -51.93 -0.42 0.82 16 26 H 0.03 0.53 7.85 -51.93 -0.41 0.12 16 27 H 0.05 0.70 7.62 -51.93 -0.40 0.31 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.72 8.06 -51.93 -0.42 0.30 16 31 H 0.08 0.84 8.01 -51.93 -0.42 0.42 16 32 H 0.07 0.73 8.12 -51.92 -0.42 0.31 16 33 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.95 8.09 -51.93 -0.42 0.53 16 38 H 0.05 0.72 7.29 -51.93 -0.38 0.34 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -30.40 300.50 -9.60 -40.00 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -7.01 Total: -4.60 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -1.63 Total: -20.48 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: -0.46 Total: -36.52 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -30.40 -9.60 -40.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388956040.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.152 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds