Wall clock time and date at job start Sun Mar 29 2020 21:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.35046 * 126.39446 * 2 1 4 4 N 1.30499 * 108.69457 * 180.02562 * 3 2 1 5 5 C 1.34128 * 109.26095 * 0.02562 * 4 3 2 6 6 C 1.50697 * 125.99126 * 180.26420 * 5 4 3 7 7 N 1.46901 * 109.47142 * 274.68617 * 6 5 4 8 8 C 1.46901 * 110.99744 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.46850 * 180.02562 * 8 7 6 10 10 C 1.53001 * 109.47031 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.47383 * 179.97438 * 10 9 8 12 12 H 1.08011 * 119.99624 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00304 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99943 * 180.02562 * 13 11 10 15 15 Si 1.86791 * 119.99971 * 0.02562 * 13 11 10 16 16 H 1.48500 * 109.47120 * 89.99854 * 15 13 11 17 17 H 1.48498 * 109.47390 * 209.99905 * 15 13 11 18 18 H 1.48502 * 109.47301 * 329.99913 * 15 13 11 19 19 C 1.34675 * 108.01655 * 0.02562 * 5 4 3 20 20 H 1.09006 * 109.46843 * 270.00040 * 1 2 3 21 21 H 1.09001 * 109.46928 * 29.99320 * 1 2 3 22 22 H 1.08996 * 109.47351 * 149.99542 * 1 2 3 23 23 H 1.08000 * 125.65569 * 359.97438 * 3 2 1 24 24 H 1.09003 * 109.47361 * 34.69044 * 6 5 4 25 25 H 1.08999 * 109.46998 * 154.68800 * 6 5 4 26 26 H 1.00902 * 110.99470 * 56.04838 * 7 6 5 27 27 H 1.09002 * 109.47407 * 299.99943 * 8 7 6 28 28 H 1.08999 * 109.47391 * 60.00639 * 8 7 6 29 29 H 1.08994 * 109.47224 * 300.00040 * 9 8 7 30 30 H 1.09008 * 109.47235 * 60.00387 * 9 8 7 31 31 H 1.08994 * 109.47280 * 300.00166 * 10 9 8 32 32 H 1.08999 * 109.47169 * 60.00499 * 10 9 8 33 33 H 0.96999 * 120.00160 * 179.97438 * 14 13 11 34 34 H 1.07999 * 126.58816 * 179.97438 * 19 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2663 1.0871 0.0000 4 7 3.5095 0.6903 -0.0006 5 6 3.5461 -0.6505 -0.0015 6 6 4.7890 -1.5025 0.0033 7 7 5.2630 -1.6849 -1.3752 8 6 6.4765 -2.5121 -1.4095 9 6 6.9392 -2.6788 -2.8583 10 6 8.2035 -3.5397 -2.8940 11 6 8.6590 -3.7045 -4.3210 12 1 8.1025 -3.2410 -5.1224 13 6 9.7860 -4.4468 -4.6037 14 7 10.1837 -4.5901 -5.8491 15 14 10.7479 -5.2488 -3.2178 16 1 10.2147 -6.6124 -2.9698 17 1 12.1807 -5.3390 -3.5973 18 1 10.6130 -4.4326 -1.9846 19 6 2.2772 -1.1018 -0.0021 20 1 -0.3633 0.0000 1.0277 21 1 -0.3633 0.8901 -0.5137 22 1 -0.3634 -0.8899 -0.5139 23 1 1.9335 2.1145 -0.0004 24 1 5.5639 -1.0115 0.5920 25 1 4.5615 -2.4746 0.4409 26 1 5.4194 -0.7951 -1.8244 27 1 7.2629 -2.0276 -0.8308 28 1 6.2611 -3.4912 -0.9816 29 1 6.1530 -3.1630 -3.4374 30 1 7.1548 -1.6995 -3.2859 31 1 8.9896 -3.0551 -2.3150 32 1 7.9885 -4.5190 -2.4664 33 1 10.9767 -5.1120 -6.0479 34 1 1.9612 -2.1345 -0.0033 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389283647.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:38 Heat of formation + Delta-G solvation = 51.234562 kcal Electronic energy + Delta-G solvation = -14265.842161 eV Core-core repulsion = 11813.410360 eV Total energy + Delta-G solvation = -2452.431801 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.13770 -36.49291 -34.36251 -33.28275 -31.56945 -29.78854 -27.88171 -26.47247 -24.27436 -21.90700 -21.33110 -20.42233 -19.77323 -17.23131 -16.61592 -15.91777 -15.56243 -14.57134 -14.41235 -14.27252 -13.97212 -13.77037 -13.11033 -13.03945 -12.89004 -12.50299 -11.86615 -11.71331 -11.51133 -10.85010 -10.71775 -10.06183 -9.87740 -9.75076 -9.62908 -9.50391 -9.09389 -8.52178 -8.46603 -8.05736 -5.97138 -3.94405 1.92594 2.61748 3.00628 3.36203 3.43060 3.47766 4.35984 4.44087 4.51918 4.71978 4.72931 4.80194 4.98363 5.17150 5.30754 5.36948 5.70512 5.80812 5.83394 6.00028 6.09118 6.28995 6.59702 6.66923 6.68377 7.01514 7.04207 7.34346 7.45581 7.54060 7.71600 7.88320 8.00538 8.63028 9.08883 9.65725 11.16585 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.068811 B = 0.003853 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 406.816462 B = 7266.226665 C = 7390.581460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.468 5.468 3 C 0.177 3.823 4 N -0.489 5.489 5 C 0.008 3.992 6 C 0.142 3.858 7 N -0.686 5.686 8 C 0.056 3.944 9 C -0.099 4.099 10 C -0.013 4.013 11 C -0.517 4.517 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.906 5.906 15 Si 0.881 3.119 16 H -0.277 1.277 17 H -0.289 1.289 18 H -0.266 1.266 19 C -0.039 4.039 20 H 0.075 0.925 21 H 0.086 0.914 22 H 0.085 0.915 23 H 0.203 0.797 24 H 0.039 0.961 25 H 0.080 0.920 26 H 0.343 0.657 27 H 0.024 0.976 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.051 0.949 31 H 0.014 0.986 32 H 0.011 0.989 33 H 0.262 0.738 34 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.815 8.667 14.686 26.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.151 5.151 3 C -0.105 4.105 4 N -0.208 5.208 5 C -0.120 4.120 6 C 0.012 3.988 7 N -0.318 5.318 8 C -0.072 4.072 9 C -0.137 4.137 10 C -0.051 4.051 11 C -0.555 4.555 12 H 0.090 0.910 13 C -0.137 4.137 14 N -0.546 5.546 15 Si 0.709 3.291 16 H -0.203 1.203 17 H -0.215 1.215 18 H -0.190 1.190 19 C -0.172 4.172 20 H 0.093 0.907 21 H 0.105 0.895 22 H 0.104 0.896 23 H 0.219 0.781 24 H 0.057 0.943 25 H 0.098 0.902 26 H 0.161 0.839 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.070 0.930 31 H 0.032 0.968 32 H 0.030 0.970 33 H 0.072 0.928 34 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -19.566 8.560 14.458 25.790 hybrid contribution 0.383 -0.324 0.905 1.034 sum -19.183 8.236 15.363 25.920 Atomic orbital electron populations 1.22022 0.76727 1.04729 1.03389 1.45402 1.07576 1.07160 1.54984 1.24927 0.85502 0.93548 1.06555 1.70155 1.19497 1.11816 1.19324 1.20591 0.94099 0.90245 1.07111 1.20081 0.91264 0.96576 0.90872 1.60589 1.34259 1.21356 1.15559 1.22156 0.88997 0.96828 0.99236 1.21437 0.98782 1.00467 0.93034 1.19546 0.93077 0.94671 0.97808 1.21179 1.10668 1.31898 0.91785 0.91045 1.25049 0.97188 0.96072 0.95374 1.69925 1.25225 1.41304 1.18112 0.86752 0.79099 0.80090 0.83183 1.20332 1.21492 1.19020 1.22491 0.90736 0.92540 1.11446 0.90681 0.89503 0.89612 0.78052 0.94264 0.90179 0.83931 0.95724 0.91500 0.92035 0.93032 0.96802 0.97049 0.92835 0.80838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.31 11.18 59.85 0.67 0.98 16 2 N -0.47 -4.23 3.15 -125.99 -0.40 -4.62 16 3 C 0.18 1.84 12.56 -90.37 -1.14 0.70 16 4 N -0.49 -6.91 11.25 -10.87 -0.12 -7.04 16 5 C 0.01 0.11 6.60 -82.85 -0.55 -0.43 16 6 C 0.14 1.98 6.22 -4.98 -0.03 1.95 16 7 N -0.69 -10.96 6.49 -115.06 -0.75 -11.71 16 8 C 0.06 0.99 5.68 -3.82 -0.02 0.96 16 9 C -0.10 -2.09 5.41 -26.73 -0.14 -2.23 16 10 C -0.01 -0.33 4.04 -27.88 -0.11 -0.44 16 11 C -0.52 -15.34 9.66 -34.44 -0.33 -15.68 16 12 H 0.07 2.28 7.99 -52.48 -0.42 1.86 16 13 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.91 -28.77 13.96 55.43 0.77 -27.99 16 15 Si 0.88 22.36 27.47 -169.99 -4.67 17.70 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 18 H -0.27 -6.48 6.54 56.52 0.37 -6.11 16 19 C -0.04 -0.43 11.49 -16.56 -0.19 -0.62 16 20 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 21 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 22 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 23 H 0.20 1.29 8.06 -52.49 -0.42 0.87 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.34 5.64 8.72 -39.29 -0.34 5.30 16 27 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 30 H 0.05 1.09 8.14 -51.92 -0.42 0.67 16 31 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 32 H 0.01 0.27 7.57 -51.93 -0.39 -0.12 16 33 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 34 H 0.17 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 290.59 15.07 4.38 4.38 Total: -1.00 -34.77 290.59 -8.07 -42.84 By element: Atomic # 1 Polarization: 4.77 SS G_CDS: -5.35 Total: -0.57 kcal Atomic # 6 Polarization: -11.04 SS G_CDS: -1.94 Total: -12.99 kcal Atomic # 7 Polarization: -50.87 SS G_CDS: -0.49 Total: -51.36 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.70 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -34.77 -8.07 -42.84 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389283647.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.079 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds