Wall clock time and date at job start Sun Mar 29 2020 21:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00347 * 2 1 4 4 H 1.48501 * 109.47324 * 239.99917 * 3 2 1 5 5 H 1.48506 * 109.47169 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47397 * 119.99545 * 3 2 1 7 7 C 1.37883 * 119.99521 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99302 * 180.02562 * 7 2 1 9 9 C 1.50692 * 120.00311 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47240 * 179.97438 * 9 7 2 11 11 N 1.46893 * 109.47146 * 174.39742 * 10 9 7 12 12 C 1.46904 * 111.00625 * 76.14015 * 11 10 9 13 13 C 1.53785 * 113.61323 * 279.16191 * 12 11 10 14 14 C 1.53954 * 87.01794 * 220.04174 * 13 12 11 15 15 C 1.53775 * 113.61606 * 181.55529 * 12 11 10 16 16 C 1.46902 * 110.99886 * 200.09482 * 11 10 9 17 17 C 1.53785 * 113.61400 * 155.18221 * 16 11 10 18 18 C 1.53954 * 87.01893 * 220.04630 * 17 16 11 19 19 C 1.53779 * 113.61559 * 57.57466 * 16 11 10 20 20 H 0.97002 * 120.00158 * 0.02562 * 1 2 3 21 21 H 1.08996 * 109.47559 * 300.00173 * 9 7 2 22 22 H 1.09005 * 109.46728 * 60.00195 * 9 7 2 23 23 H 1.08999 * 109.46654 * 294.39192 * 10 9 7 24 24 H 1.08996 * 109.46938 * 54.39464 * 10 9 7 25 25 H 1.08997 * 112.84866 * 50.35392 * 12 11 10 26 26 H 1.08996 * 113.61160 * 334.56854 * 13 12 11 27 27 H 1.08997 * 113.61301 * 105.46617 * 13 12 11 28 28 H 1.08995 * 113.54264 * 270.80897 * 14 13 12 29 29 H 1.09000 * 113.73719 * 139.94065 * 14 13 12 30 30 H 1.09006 * 113.61276 * 254.52728 * 15 12 11 31 31 H 1.08998 * 113.61947 * 25.43237 * 15 12 11 32 32 H 1.08996 * 112.85072 * 286.37089 * 16 11 10 33 33 H 1.09002 * 113.61357 * 334.56731 * 17 16 11 34 34 H 1.09002 * 113.61568 * 105.46887 * 17 16 11 35 35 H 1.08999 * 113.54220 * 270.80899 * 18 17 16 36 36 H 1.09006 * 113.74368 * 139.93920 * 18 17 16 37 37 H 1.09000 * 113.61076 * 254.53058 * 19 16 11 38 38 H 1.09006 * 113.61451 * 25.43132 * 19 16 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0044 -1.1942 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 7 1.5156 -4.9300 0.1357 12 6 0.8712 -5.3043 -1.1302 13 6 -0.4607 -4.5779 -1.3818 14 6 -0.9936 -5.9144 -1.9296 15 6 0.0575 -6.6064 -1.0458 16 6 2.4030 -5.9998 0.6112 17 6 1.6637 -7.1362 1.3372 18 6 2.8384 -7.1564 2.3321 19 6 3.0817 -5.6855 1.9549 20 1 -0.4850 0.8400 -0.0004 21 1 0.6239 -2.5567 0.8902 22 1 0.6246 -2.5570 -0.8898 23 1 2.8038 -3.6625 -0.9354 24 1 2.9360 -3.5495 0.8360 25 1 1.5542 -5.2704 -1.9790 26 1 -0.9586 -4.2504 -0.4692 27 1 -0.3941 -3.7921 -2.1342 28 1 -0.8216 -6.0467 -2.9977 29 1 -2.0210 -6.1304 -1.6364 30 1 0.5419 -7.4559 -1.5275 31 1 -0.2985 -6.8346 -0.0412 32 1 3.0941 -6.3488 -0.1560 33 1 0.7186 -6.8270 1.7837 34 1 1.5755 -8.0475 0.7458 35 1 3.6484 -7.8229 2.0359 36 1 2.5330 -7.2964 3.3691 37 1 4.1366 -5.4275 1.8614 38 1 2.5250 -4.9790 2.5706 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590025613.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:22 Heat of formation + Delta-G solvation = 32.899170 kcal Electronic energy + Delta-G solvation = -15929.408280 eV Core-core repulsion = 13579.721740 eV Total energy + Delta-G solvation = -2349.686540 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.56069 -37.39546 -34.23970 -32.48031 -29.22869 -26.02245 -25.25353 -24.36148 -24.22879 -22.35528 -20.07675 -19.20305 -18.64816 -16.38648 -15.89520 -15.38151 -14.75346 -14.62860 -14.38883 -13.32191 -12.75828 -12.57518 -12.24216 -12.10465 -11.86006 -11.65390 -11.36641 -11.20359 -10.98092 -10.81527 -10.60206 -10.50962 -10.30017 -10.09811 -9.97136 -9.62438 -9.48928 -9.24952 -8.94289 -8.25432 -7.64526 -5.93475 -3.94996 3.36140 3.40481 3.42870 4.43404 4.59322 4.85517 4.97399 5.03160 5.10980 5.16074 5.21108 5.37598 5.39366 5.43412 5.75714 5.86717 5.92627 5.99489 6.06316 6.09795 6.16223 6.21613 6.31151 6.33712 6.49155 6.50917 6.60210 6.70328 6.76437 6.91864 7.13052 7.65282 7.74296 7.89210 8.06105 8.19154 8.52337 9.12636 9.67739 11.17695 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.027370 B = 0.007782 C = 0.006367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.786089 B = 3597.016452 C = 4396.469473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.051 0.949 9 C 0.029 3.971 10 C 0.062 3.938 11 N -0.516 5.516 12 C 0.061 3.939 13 C -0.114 4.114 14 C -0.149 4.149 15 C -0.130 4.130 16 C 0.056 3.944 17 C -0.123 4.123 18 C -0.145 4.145 19 C -0.130 4.130 20 H 0.260 0.740 21 H 0.022 0.978 22 H 0.023 0.977 23 H 0.016 0.984 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.054 0.946 31 H 0.089 0.911 32 H 0.053 0.947 33 H 0.088 0.912 34 H 0.058 0.942 35 H 0.072 0.928 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 -13.946 0.103 14.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.560 4.560 8 H 0.069 0.931 9 C -0.008 4.008 10 C -0.065 4.065 11 N -0.240 5.240 12 C -0.048 4.048 13 C -0.152 4.152 14 C -0.187 4.187 15 C -0.168 4.168 16 C -0.053 4.053 17 C -0.161 4.161 18 C -0.183 4.183 19 C -0.167 4.167 20 H 0.069 0.931 21 H 0.040 0.960 22 H 0.042 0.958 23 H 0.034 0.966 24 H 0.078 0.922 25 H 0.071 0.929 26 H 0.111 0.889 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.070 0.930 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.332 -13.750 0.451 13.822 hybrid contribution 1.232 0.931 -0.709 1.700 sum 2.564 -12.819 -0.258 13.076 Atomic orbital electron populations 1.69960 1.05929 1.26491 1.50844 1.24966 0.94804 0.98973 0.95485 0.86711 0.79618 0.83432 0.78518 1.20391 1.21310 1.20323 1.21211 0.92862 0.91330 1.50621 0.93115 1.19125 0.94015 0.89673 0.98011 1.22339 0.96951 0.88883 0.98329 1.62623 1.31152 1.02614 1.27617 1.23036 0.94820 0.96103 0.90819 1.22962 0.95311 0.95326 1.01611 1.22836 0.98564 0.98378 0.98883 1.23058 0.97327 0.95931 1.00471 1.23026 0.94164 0.93128 0.94969 1.23033 0.98139 0.97450 0.97447 1.22788 0.98816 0.97276 0.99434 1.22972 1.00102 0.96561 0.97090 0.93067 0.95960 0.95828 0.96616 0.92157 0.92857 0.88934 0.91529 0.91012 0.91714 0.92732 0.89277 0.92962 0.89356 0.92326 0.90902 0.91570 0.92162 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.30 16 2 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -14.98 9.11 -34.44 -0.31 -15.30 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.03 0.77 4.60 -27.89 -0.13 0.64 16 10 C 0.06 1.34 4.85 -3.83 -0.02 1.32 16 11 N -0.52 -9.49 4.41 -216.79 -0.96 -10.45 16 12 C 0.06 1.04 3.14 -66.90 -0.21 0.83 16 13 C -0.11 -2.02 5.69 -25.83 -0.15 -2.17 16 14 C -0.15 -2.07 8.09 -25.83 -0.21 -2.28 16 15 C -0.13 -1.82 6.19 -25.92 -0.16 -1.98 16 16 C 0.06 0.86 3.04 -66.90 -0.20 0.66 16 17 C -0.12 -1.59 5.60 -25.83 -0.14 -1.74 16 18 C -0.15 -1.73 8.09 -25.83 -0.21 -1.94 16 19 C -0.13 -1.88 6.32 -25.92 -0.16 -2.04 16 20 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 21 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.02 0.64 5.74 -51.93 -0.30 0.34 16 23 H 0.02 0.34 7.90 -51.93 -0.41 -0.07 16 24 H 0.06 1.30 6.64 -51.93 -0.34 0.95 16 25 H 0.05 0.94 8.01 -51.93 -0.42 0.52 16 26 H 0.09 1.81 8.12 -51.93 -0.42 1.39 16 27 H 0.07 1.27 7.53 -51.93 -0.39 0.88 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.09 1.24 6.38 -51.93 -0.33 0.91 16 32 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.22 7.62 -51.93 -0.40 0.83 16 34 H 0.06 0.68 7.97 -51.93 -0.41 0.27 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.09 1.49 8.10 -51.93 -0.42 1.07 16 LS Contribution 293.93 15.07 4.43 4.43 Total: -1.00 -29.43 293.93 -9.58 -39.02 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -6.77 Total: -1.24 kcal Atomic # 6 Polarization: -20.38 SS G_CDS: -2.00 Total: -22.38 kcal Atomic # 7 Polarization: -36.53 SS G_CDS: -0.22 Total: -36.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -29.43 -9.58 -39.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590025613.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.915 kcal (2) G-P(sol) polarization free energy of solvation -29.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds