Wall clock time and date at job start Sun Mar 29 2020 21:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48506 * 109.46985 * 359.97438 * 3 2 1 5 5 H 1.48494 * 109.47276 * 119.99911 * 3 2 1 6 6 H 1.48498 * 109.47150 * 240.00121 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99535 * 179.97438 * 7 2 1 9 9 C 1.50694 * 119.99902 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47066 * 180.02562 * 9 7 2 11 11 C 1.46898 * 110.99849 * 180.02562 * 10 9 7 12 12 H 1.08997 * 109.71181 * 34.41107 * 11 10 9 13 13 C 1.53292 * 109.70875 * 273.78283 * 11 10 9 14 14 C 1.52960 * 107.82281 * 175.59261 * 13 11 10 15 15 C 1.53051 * 110.25680 * 63.66548 * 14 13 11 16 16 H 1.08997 * 112.18482 * 70.76450 * 15 14 13 17 17 C 1.54709 * 106.97161 * 193.22518 * 15 14 13 18 18 C 1.54011 * 105.97392 * 90.07489 * 17 15 14 19 19 C 1.54618 * 106.58872 * 2.31072 * 18 17 15 20 20 C 1.53899 * 110.75248 * 304.99965 * 15 14 13 21 21 H 1.08996 * 109.17926 * 171.18366 * 20 15 14 22 22 C 1.50967 * 113.51492 * 49.06202 * 20 15 14 23 23 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 24 24 H 1.09007 * 109.47443 * 300.00164 * 9 7 2 25 25 H 1.09003 * 109.47615 * 60.00205 * 9 7 2 26 26 H 1.00895 * 111.00143 * 56.04990 * 10 9 7 27 27 H 1.09001 * 109.63208 * 296.34931 * 13 11 10 28 28 H 1.09002 * 109.62914 * 56.92706 * 13 11 10 29 29 H 1.09002 * 110.39001 * 302.92720 * 14 13 11 30 30 H 1.09003 * 108.61846 * 183.28409 * 14 13 11 31 31 H 1.08996 * 109.75782 * 331.22403 * 17 15 14 32 32 H 1.08995 * 110.78262 * 209.46345 * 17 15 14 33 33 H 1.08999 * 110.03454 * 243.03190 * 18 17 15 34 34 H 1.08998 * 110.07900 * 121.61474 * 18 17 15 35 35 H 1.08998 * 110.62574 * 264.57253 * 19 18 17 36 36 H 1.08991 * 110.62761 * 141.55457 * 19 18 17 37 37 H 1.09004 * 109.06869 * 187.85072 * 22 20 15 38 38 H 1.09003 * 109.07000 * 68.89754 * 22 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1030 1.6963 1.2125 6 1 3.1030 1.6963 -1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2057 -3.6158 -0.0005 11 6 1.5053 -4.9070 -0.0011 12 1 0.5861 -4.8264 -0.5813 13 6 1.1747 -5.3165 1.4386 14 6 0.3524 -6.6051 1.3818 15 6 1.1847 -7.7385 0.7776 16 1 1.9756 -8.0717 1.4496 17 6 0.2058 -8.8889 0.4432 18 6 -0.2675 -8.6365 -1.0005 19 6 0.4866 -7.3822 -1.4993 20 6 1.7366 -7.3347 -0.6011 21 1 2.4478 -8.0893 -0.9371 22 6 2.4061 -5.9817 -0.6092 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 0.8897 25 1 0.6240 -2.5568 -0.8903 26 1 2.8405 -3.5488 0.7808 27 1 2.0981 -5.4701 1.9969 28 1 0.5815 -4.5355 1.9144 29 1 -0.5435 -6.4576 0.7788 30 1 0.0601 -6.8764 2.3962 31 1 -0.6433 -8.8603 1.1261 32 1 0.7068 -9.8546 0.5095 33 1 -1.3424 -8.4562 -1.0149 34 1 -0.0243 -9.4930 -1.6291 35 1 -0.1208 -6.4880 -1.3594 36 1 0.7699 -7.4954 -2.5457 37 1 2.6432 -5.7078 -1.6373 38 1 3.3307 -6.0384 -0.0347 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591744939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:16 Heat of formation + Delta-G solvation = -36.011391 kcal Electronic energy + Delta-G solvation = -15781.811788 eV Core-core repulsion = 13429.137062 eV Total energy + Delta-G solvation = -2352.674726 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.90244 -35.89590 -33.07463 -31.67269 -31.06319 -28.09237 -26.99344 -25.11229 -22.25231 -21.79986 -20.96143 -19.94459 -18.28868 -16.53357 -15.75557 -14.91366 -14.58936 -14.37186 -13.91679 -13.84417 -13.18729 -12.91349 -12.51532 -12.17812 -11.83210 -11.63190 -11.38828 -11.19483 -11.12341 -10.85167 -10.74169 -10.69086 -10.53884 -10.42886 -10.12307 -9.91829 -9.74432 -9.57050 -9.10294 -8.44228 -7.16121 -5.99765 -4.01485 3.35653 3.39257 3.42612 4.45443 4.63094 4.64953 4.77464 5.22411 5.27532 5.33579 5.35937 5.41519 5.49594 5.61415 5.72099 5.75222 5.78929 5.87655 5.91799 5.97550 6.07323 6.12554 6.17812 6.23901 6.38491 6.41206 6.46879 6.51572 6.60978 6.79007 6.84533 7.33518 7.50475 7.83477 8.18725 8.47941 8.69605 9.08216 9.63246 11.11259 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.056750 B = 0.005480 C = 0.005453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.270965 B = 5107.811006 C = 5133.091174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.277 1.277 6 H -0.276 1.276 7 C -0.514 4.514 8 H 0.061 0.939 9 C 0.196 3.804 10 N -0.687 5.687 11 C 0.089 3.911 12 H 0.070 0.930 13 C -0.149 4.149 14 C -0.105 4.105 15 C -0.086 4.086 16 H 0.073 0.927 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.122 4.122 20 C -0.081 4.081 21 H 0.064 0.936 22 C -0.097 4.097 23 H 0.261 0.739 24 H -0.014 1.014 25 H 0.025 0.975 26 H 0.328 0.672 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -16.450 0.834 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.726 3.274 4 H -0.214 1.214 5 H -0.203 1.203 6 H -0.202 1.202 7 C -0.553 4.553 8 H 0.079 0.921 9 C 0.069 3.931 10 N -0.316 5.316 11 C -0.022 4.022 12 H 0.089 0.911 13 C -0.188 4.188 14 C -0.143 4.143 15 C -0.104 4.104 16 H 0.091 0.909 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.160 4.160 20 C -0.100 4.100 21 H 0.082 0.918 22 C -0.136 4.136 23 H 0.071 0.929 24 H 0.004 0.996 25 H 0.044 0.956 26 H 0.144 0.856 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.070 0.930 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.610 -16.296 0.126 16.308 hybrid contribution -0.016 0.879 0.949 1.293 sum 0.594 -15.418 1.075 15.466 Atomic orbital electron populations 1.69958 1.06075 1.26812 1.50995 1.24989 0.94863 0.99315 0.95403 0.86554 0.79428 0.82738 0.78630 1.21367 1.20297 1.20174 1.21183 0.93473 0.90385 1.50236 0.92090 1.19544 0.90622 0.87358 0.95582 1.60692 1.20924 1.01223 1.48732 1.21541 0.96549 0.90324 0.93749 0.91136 1.22344 0.99908 0.97193 0.99337 1.21547 0.98358 0.94625 0.99814 1.21900 0.96925 0.94922 0.96667 0.90876 1.22384 0.98968 0.98177 0.96584 1.22195 0.99832 0.98060 0.96120 1.22364 0.96814 0.97995 0.98791 1.21311 0.96576 0.97378 0.94767 0.91799 1.20974 0.98314 0.92702 1.01561 0.92917 0.99620 0.95646 0.85581 0.92142 0.92022 0.91807 0.93033 0.92061 0.92351 0.92245 0.92351 0.91013 0.91952 0.91673 0.92560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.21 13.29 55.43 0.74 -26.48 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 7 C -0.51 -14.82 9.32 -34.44 -0.32 -15.14 16 8 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 9 C 0.20 5.21 5.25 -4.98 -0.03 5.19 16 10 N -0.69 -14.99 6.26 -107.92 -0.68 -15.67 16 11 C 0.09 1.59 2.27 -67.64 -0.15 1.44 16 12 H 0.07 1.36 6.41 -51.93 -0.33 1.03 16 13 C -0.15 -2.38 5.23 -26.60 -0.14 -2.52 16 14 C -0.11 -1.41 4.62 -26.73 -0.12 -1.54 16 15 C -0.09 -1.02 3.39 -89.23 -0.30 -1.32 16 16 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 17 C -0.12 -1.29 6.18 -25.30 -0.16 -1.45 16 18 C -0.12 -1.32 6.69 -25.35 -0.17 -1.49 16 19 C -0.12 -1.50 5.72 -25.36 -0.15 -1.65 16 20 C -0.08 -1.03 2.75 -90.65 -0.25 -1.28 16 21 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 22 C -0.10 -1.47 5.00 -27.83 -0.14 -1.61 16 23 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 24 H -0.01 -0.39 7.51 -51.92 -0.39 -0.78 16 25 H 0.03 0.73 8.06 -51.93 -0.42 0.32 16 26 H 0.33 6.89 8.47 -39.29 -0.33 6.55 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 1.11 7.51 -51.93 -0.39 0.72 16 29 H 0.06 0.89 6.98 -51.93 -0.36 0.53 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 7.76 -51.93 -0.40 0.22 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.99 5.97 -51.93 -0.31 0.68 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 288.46 15.07 4.35 4.35 Total: -1.00 -29.43 288.46 -9.35 -38.78 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -6.71 Total: 1.92 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.02 Total: -19.84 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: 0.06 Total: -42.14 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.43 -9.35 -38.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591744939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.769 kcal (2) G-P(sol) polarization free energy of solvation -29.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds