Wall clock time and date at job start Sun Mar 29 2020 21:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.46996 * 2 1 4 4 H 1.08997 * 109.47049 * 54.49928 * 3 2 1 5 5 C 1.50694 * 109.46899 * 174.49718 * 3 2 1 6 6 H 1.08007 * 119.99517 * 119.99787 * 5 3 2 7 7 C 1.37880 * 120.00555 * 300.00075 * 5 3 2 8 8 N 1.31508 * 119.99449 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00260 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47296 * 59.99349 * 9 7 5 11 11 H 1.48497 * 109.47280 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47117 * 299.99839 * 9 7 5 13 13 N 1.46901 * 109.46947 * 294.50089 * 3 2 1 14 14 C 1.46899 * 110.99773 * 154.42520 * 13 3 2 15 15 C 1.53007 * 109.46771 * 174.78734 * 14 13 3 16 16 C 1.50698 * 109.46955 * 180.02562 * 15 14 13 17 17 C 1.39874 * 126.03763 * 269.68759 * 16 15 14 18 18 N 1.30845 * 108.20060 * 179.81804 * 17 16 15 19 19 N 1.40088 * 108.20085 * 0.44119 * 18 17 16 20 20 H 0.97008 * 126.03069 * 179.70128 * 19 18 17 21 21 C 1.34940 * 107.92888 * 359.71581 * 19 18 17 22 22 H 1.09004 * 109.47272 * 186.00965 * 1 2 3 23 23 H 1.08994 * 109.47705 * 306.01021 * 1 2 3 24 24 H 1.09002 * 109.47151 * 66.01294 * 1 2 3 25 25 H 1.08997 * 109.47643 * 239.99691 * 2 1 3 26 26 H 1.09006 * 109.46830 * 119.99632 * 2 1 3 27 27 H 0.97000 * 119.99681 * 179.97438 * 8 7 5 28 28 H 1.00899 * 110.99930 * 30.46795 * 13 3 2 29 29 H 1.08997 * 109.47066 * 294.78003 * 14 13 3 30 30 H 1.08996 * 109.47387 * 54.78582 * 14 13 3 31 31 H 1.09006 * 109.46512 * 299.99493 * 15 14 13 32 32 H 1.08996 * 109.47290 * 59.99787 * 15 14 13 33 33 H 1.07992 * 125.89867 * 0.02562 * 17 16 15 34 34 H 1.08006 * 126.12522 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5984 1.9840 0.8366 5 6 3.5407 1.4447 0.1362 6 1 4.1524 1.8870 -0.6363 7 6 4.1330 0.8820 1.2469 8 7 3.3882 0.3439 2.1877 9 14 5.9933 0.8854 1.4161 10 1 6.4879 2.2856 1.4163 11 1 6.3757 0.2256 2.6903 12 1 6.5954 0.1481 0.2762 13 7 1.6616 2.0956 -1.2603 14 6 1.5681 3.5518 -1.0912 15 6 1.3010 4.2067 -2.4480 16 6 1.2057 5.7006 -2.2747 17 6 0.0390 6.4257 -2.0109 18 7 0.3558 7.6922 -1.9237 19 7 1.7346 7.8142 -2.1395 20 1 2.2416 8.6412 -2.1367 21 6 2.2327 6.5783 -2.3524 22 1 -0.3634 -1.0220 0.1076 23 1 -0.3634 0.6041 0.8312 24 1 -0.3633 0.4178 -0.9389 25 1 1.8934 -0.5138 -0.8899 26 1 1.8933 -0.5138 0.8901 27 1 3.8049 -0.0523 2.9689 28 1 0.7978 1.7169 -1.6187 29 1 0.7522 3.7866 -0.4077 30 1 2.5048 3.9311 -0.6828 31 1 2.1170 3.9719 -3.1316 32 1 0.3643 3.8274 -2.8564 33 1 -0.9516 6.0113 -1.8956 34 1 3.2660 6.3334 -2.5493 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594006886.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:27:08 Heat of formation + Delta-G solvation = 60.303130 kcal Electronic energy + Delta-G solvation = -14959.042616 eV Core-core repulsion = 12507.004057 eV Total energy + Delta-G solvation = -2452.038559 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.03470 -36.47157 -33.67783 -31.85633 -31.21716 -30.34161 -27.43583 -25.76223 -22.94607 -21.96478 -21.44116 -19.87339 -19.38777 -17.54354 -16.24555 -14.83775 -14.79483 -14.47807 -14.26949 -13.89513 -13.43239 -12.93728 -12.70127 -12.52616 -11.80977 -11.70334 -11.48200 -11.07703 -10.78681 -10.67403 -10.61201 -10.26304 -9.91384 -9.66032 -9.59134 -9.53704 -9.01845 -8.31851 -8.27003 -7.13785 -5.92408 -3.96220 1.98630 2.90602 2.98417 3.35639 3.39979 3.42984 4.47760 4.89150 5.03476 5.32280 5.39786 5.57149 5.66325 5.95277 6.08849 6.16947 6.21068 6.21892 6.26280 6.46415 6.63702 6.82656 6.83855 6.89622 7.14312 7.25802 7.32834 7.56927 7.72084 7.83614 7.96636 8.38479 8.46228 8.84294 9.11497 9.68319 11.13055 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.026238 B = 0.006727 C = 0.005657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.881175 B = 4161.244903 C = 4948.142590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C 0.218 3.782 4 H 0.000 1.000 5 C -0.491 4.491 6 H 0.060 0.940 7 C 0.054 3.946 8 N -0.897 5.897 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.689 5.689 14 C 0.075 3.925 15 C -0.040 4.040 16 C -0.222 4.222 17 C 0.053 3.947 18 N -0.305 5.305 19 N -0.483 5.483 20 H 0.436 0.564 21 C 0.057 3.943 22 H 0.036 0.964 23 H 0.041 0.959 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.098 0.902 27 H 0.259 0.741 28 H 0.315 0.685 29 H 0.012 0.988 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.180 0.820 34 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.851 8.778 -7.726 12.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C 0.111 3.889 4 H 0.018 0.982 5 C -0.530 4.530 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.537 5.537 9 Si 0.723 3.277 10 H -0.205 1.205 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.320 5.320 14 C -0.055 4.055 15 C -0.079 4.079 16 C -0.234 4.234 17 C -0.133 4.133 18 N -0.128 5.128 19 N -0.191 5.191 20 H 0.279 0.721 21 C -0.090 4.090 22 H 0.056 0.944 23 H 0.061 0.939 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.116 0.884 27 H 0.069 0.931 28 H 0.132 0.868 29 H 0.030 0.970 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.197 0.803 34 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -3.618 9.862 -7.570 12.948 hybrid contribution 0.784 -0.369 0.638 1.077 sum -2.834 9.493 -6.931 12.091 Atomic orbital electron populations 1.21878 0.99618 0.99653 0.99568 1.21767 0.91229 1.00426 1.03007 1.19135 0.95354 0.89925 0.84480 0.98189 1.21186 0.91353 1.36303 1.04166 0.92164 1.24964 0.98009 0.95769 0.95898 1.69864 1.34713 1.39568 1.09603 0.86621 0.85927 0.78049 0.77112 1.20534 1.21498 1.20310 1.60678 1.36052 1.02338 1.32928 1.21790 1.00085 0.89581 0.94092 1.19925 1.01918 0.87513 0.98523 1.20266 0.92200 0.97343 1.13592 1.23832 0.99844 0.90363 0.99275 1.77251 0.91239 1.19925 1.24340 1.46243 1.06866 1.08115 1.57922 0.72086 1.22455 1.00048 0.84922 1.01543 0.94450 0.93944 0.94535 0.94049 0.88351 0.93088 0.86789 0.96978 0.91113 0.90855 0.91983 0.80273 0.80658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.90 9.64 37.16 0.36 -2.55 16 2 C -0.13 -2.97 5.36 -26.73 -0.14 -3.12 16 3 C 0.22 5.46 2.02 -68.86 -0.14 5.32 16 4 H 0.00 0.01 7.85 -51.93 -0.41 -0.39 16 5 C -0.49 -13.58 8.57 -34.44 -0.30 -13.87 16 6 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 7 C 0.05 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -25.71 11.29 55.43 0.63 -25.08 16 9 Si 0.89 21.51 29.54 -169.99 -5.02 16.49 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 13 N -0.69 -14.47 6.27 -107.95 -0.68 -15.14 16 14 C 0.07 1.40 5.44 -3.82 -0.02 1.37 16 15 C -0.04 -0.58 6.00 -27.88 -0.17 -0.75 16 16 C -0.22 -3.08 5.35 -105.05 -0.56 -3.64 16 17 C 0.05 0.73 11.96 -17.36 -0.21 0.52 16 18 N -0.30 -4.31 12.70 30.63 0.39 -3.92 16 19 N -0.48 -5.61 7.36 30.44 0.22 -5.39 16 20 H 0.44 3.52 8.96 -182.60 -1.64 1.88 16 21 C 0.06 0.70 11.90 -17.23 -0.21 0.49 16 22 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 24 H 0.04 0.63 6.66 -51.93 -0.35 0.28 16 25 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 26 H 0.10 2.62 5.94 -51.93 -0.31 2.31 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.32 6.01 6.64 -39.29 -0.26 5.74 16 29 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 1.47 7.94 -51.93 -0.41 1.06 16 31 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.18 2.01 8.06 -52.49 -0.42 1.58 16 34 H 0.18 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 285.09 15.07 4.30 4.30 Total: -1.00 -30.74 285.09 -7.94 -38.68 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -6.30 Total: 4.89 kcal Atomic # 6 Polarization: -13.34 SS G_CDS: -1.48 Total: -14.82 kcal Atomic # 7 Polarization: -50.10 SS G_CDS: 0.56 Total: -49.54 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.49 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -30.74 -7.94 -38.68 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594006886.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.984 kcal (2) G-P(sol) polarization free energy of solvation -30.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds