Wall clock time and date at job start Sun Mar 29 2020 22:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50702 * 119.99947 * 2 1 4 4 C 1.53002 * 109.46861 * 124.99992 * 3 2 1 5 5 H 1.09002 * 109.50270 * 55.00225 * 4 3 2 6 6 C 1.53114 * 109.50418 * 294.92284 * 4 3 2 7 7 C 1.53206 * 109.11920 * 182.40625 * 6 4 3 8 8 C 1.53041 * 109.29832 * 57.62704 * 7 6 4 9 9 N 1.46852 * 109.52177 * 300.82357 * 8 7 6 10 10 C 1.46898 * 110.99441 * 185.83916 * 9 8 7 11 11 C 1.53001 * 109.47560 * 45.79120 * 10 9 8 12 12 C 1.50699 * 109.47374 * 179.97438 * 11 10 9 13 13 H 1.08008 * 119.99786 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00106 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99649 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99947 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47099 * 359.97438 * 16 14 12 18 18 H 1.48494 * 109.46839 * 120.00018 * 16 14 12 19 19 H 1.48504 * 109.46714 * 239.99765 * 16 14 12 20 20 C 1.46845 * 111.19769 * 61.74302 * 9 8 7 21 21 H 1.08004 * 119.99574 * 180.02562 * 1 2 3 22 22 H 1.07994 * 120.00118 * 359.97438 * 1 2 3 23 23 H 1.08004 * 120.00185 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.47034 * 5.00238 * 3 2 1 25 25 H 1.08997 * 109.47347 * 245.00185 * 3 2 1 26 26 H 1.09006 * 109.52545 * 302.27190 * 6 4 3 27 27 H 1.09002 * 109.52724 * 62.45938 * 6 4 3 28 28 H 1.09006 * 109.48756 * 297.68305 * 7 6 4 29 29 H 1.08992 * 109.49859 * 177.57827 * 7 6 4 30 30 H 1.08998 * 109.46136 * 180.81288 * 8 7 6 31 31 H 1.08997 * 109.45119 * 60.83467 * 8 7 6 32 32 H 1.09005 * 109.47106 * 165.79443 * 10 9 8 33 33 H 1.09002 * 109.47539 * 285.79020 * 10 9 8 34 34 H 1.08994 * 109.46793 * 300.00035 * 11 10 9 35 35 H 1.09000 * 109.46766 * 59.99980 * 11 10 9 36 36 H 0.97002 * 119.99814 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.46233 * 178.23546 * 20 9 8 38 38 H 1.09007 * 109.46116 * 58.26999 * 20 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1817 5 1 3.6829 0.4575 1.1408 6 6 2.2451 1.3237 2.4933 7 6 3.2234 1.4126 3.6689 8 6 4.0697 2.6799 3.5280 9 7 4.8055 2.6398 2.2578 10 6 5.7338 3.7734 2.1513 11 6 6.5016 3.9291 3.4655 12 6 7.4543 5.0916 3.3560 13 1 7.5066 5.6626 2.4407 14 6 8.2592 5.4263 4.4243 15 7 8.1951 4.7313 5.5389 16 14 9.4396 6.8677 4.2887 17 1 9.3198 7.4806 2.9415 18 1 9.1071 7.8787 5.3243 19 1 10.8305 6.3892 4.4926 20 6 3.8868 2.6026 1.1129 21 1 -0.5399 -0.9354 0.0004 22 1 -0.5400 0.9352 0.0004 23 1 1.8500 -0.9353 -0.0004 24 1 1.3585 2.1316 0.0896 25 1 2.6212 1.4027 -0.9314 26 1 1.5686 2.1782 2.5172 27 1 1.6700 0.4006 2.5657 28 1 3.8743 0.5382 3.6672 29 1 2.6655 1.4497 4.6045 30 1 4.7767 2.7383 4.3555 31 1 3.4192 3.5543 3.5435 32 1 6.4373 3.5918 1.3387 33 1 5.1721 4.6852 1.9485 34 1 5.7981 4.1107 4.2779 35 1 7.0634 3.0173 3.6682 36 1 8.7611 4.9670 6.2906 37 1 4.4608 2.6051 0.1863 38 1 3.2373 3.4776 1.1398 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595657900.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:49 Heat of formation + Delta-G solvation = -20.519392 kcal Electronic energy + Delta-G solvation = -15364.818277 eV Core-core repulsion = 13012.815334 eV Total energy + Delta-G solvation = -2352.002943 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.28029 -37.00101 -35.27419 -33.90229 -32.13949 -30.96021 -27.16232 -26.87460 -24.40510 -23.47260 -21.44760 -20.68214 -20.34736 -18.64175 -16.72164 -16.57490 -16.00646 -15.83371 -15.75994 -15.18988 -14.72703 -14.36724 -14.19192 -14.03301 -13.75100 -13.09773 -13.01301 -12.85941 -12.59612 -12.40544 -12.03216 -12.00583 -11.81664 -11.70927 -11.47893 -11.33871 -11.07331 -10.91882 -10.55027 -10.07588 -9.16739 -8.21529 -6.32954 1.39457 1.40022 1.49172 1.53471 2.39512 3.07847 3.11785 3.81275 3.90300 3.96625 4.14240 4.34264 4.39226 4.48358 4.50037 4.55991 4.63536 4.69124 4.76066 4.86740 4.88476 5.00005 5.05278 5.08178 5.12685 5.19096 5.24474 5.36923 5.43446 5.54446 5.65334 5.77354 5.83765 5.98327 6.09076 6.33169 6.36370 6.83582 7.36147 8.90700 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.067980 B = 0.004875 C = 0.004641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.785452 B = 5742.337582 C = 6032.297394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.154 4.154 3 C -0.084 4.084 4 C -0.072 4.072 5 H 0.073 0.927 6 C -0.105 4.105 7 C -0.111 4.111 8 C 0.052 3.948 9 N -0.548 5.548 10 C 0.077 3.923 11 C 0.030 3.970 12 C -0.546 4.546 13 H 0.059 0.941 14 C 0.001 3.999 15 N -0.931 5.931 16 Si 0.968 3.032 17 H -0.262 1.262 18 H -0.277 1.277 19 H -0.277 1.277 20 C 0.059 3.941 21 H 0.106 0.894 22 H 0.097 0.903 23 H 0.112 0.888 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.057 0.943 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.057 0.943 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.017 0.983 34 H 0.000 1.000 35 H -0.007 1.007 36 H 0.264 0.736 37 H 0.074 0.926 38 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.139 -7.689 -9.405 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.172 4.172 3 C -0.122 4.122 4 C -0.091 4.091 5 H 0.092 0.908 6 C -0.142 4.142 7 C -0.149 4.149 8 C -0.076 4.076 9 N -0.272 5.272 10 C -0.050 4.050 11 C -0.007 4.007 12 C -0.584 4.584 13 H 0.077 0.923 14 C -0.197 4.197 15 N -0.571 5.571 16 Si 0.792 3.208 17 H -0.186 1.186 18 H -0.203 1.203 19 H -0.203 1.203 20 C -0.069 4.069 21 H 0.124 0.876 22 H 0.115 0.885 23 H 0.130 0.870 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.076 0.924 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.081 0.919 33 H 0.035 0.965 34 H 0.019 0.981 35 H 0.011 0.989 36 H 0.073 0.927 37 H 0.093 0.907 38 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -13.797 -8.124 -9.252 18.492 hybrid contribution 0.459 1.507 0.411 1.628 sum -13.338 -6.617 -8.841 17.317 Atomic orbital electron populations 1.23960 0.95810 1.02333 1.01326 1.22956 0.96227 0.98281 0.99692 1.20735 0.97694 0.95960 0.97774 1.21086 0.95799 0.97197 0.95017 0.90838 1.21598 0.96973 1.02225 0.93425 1.21597 0.97399 0.96717 0.99197 1.22134 0.95686 0.97413 0.92388 1.61998 1.19019 1.43504 1.02710 1.21983 0.94030 0.89862 0.99165 1.19062 0.94069 0.95131 0.92442 1.21656 1.22017 1.14978 0.99750 0.92274 1.25971 0.99077 0.99772 0.94849 1.70112 1.40843 1.41698 1.04445 0.85361 0.78271 0.78624 0.78548 1.18611 1.20276 1.20250 1.22209 0.93816 0.97380 0.93495 0.87595 0.88511 0.87010 0.91448 0.90409 0.92444 0.90314 0.91805 0.90614 0.92498 0.96251 0.91864 0.96470 0.98133 0.98899 0.92713 0.90713 0.95615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.96 14.32 67.78 0.97 -1.99 16 2 C -0.15 -2.57 8.55 25.65 0.22 -2.35 16 3 C -0.08 -1.57 5.14 29.85 0.15 -1.42 16 4 C -0.07 -1.72 2.34 -10.74 -0.03 -1.74 16 5 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 6 C -0.10 -2.45 5.07 30.70 0.16 -2.30 16 7 C -0.11 -3.17 6.09 30.68 0.19 -2.98 16 8 C 0.05 1.92 4.85 86.33 0.42 2.34 16 9 N -0.55 -20.86 4.81 -896.35 -4.31 -25.17 16 10 C 0.08 3.43 5.21 86.30 0.45 3.88 16 11 C 0.03 1.66 4.22 29.85 0.13 1.78 16 12 C -0.55 -31.88 9.11 25.60 0.23 -31.64 16 13 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 14 C 0.00 0.07 5.46 84.65 0.46 0.54 16 15 N -0.93 -57.45 13.29 21.45 0.28 -57.17 16 16 Si 0.97 44.84 29.54 68.60 2.03 46.87 16 17 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 20 C 0.06 1.75 4.71 86.33 0.41 2.15 16 21 H 0.11 1.32 8.06 -2.91 -0.02 1.30 16 22 H 0.10 1.39 7.84 -2.91 -0.02 1.37 16 23 H 0.11 1.76 8.06 -2.91 -0.02 1.74 16 24 H 0.07 1.24 7.79 -2.39 -0.02 1.22 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 27 H 0.08 1.59 7.47 -2.39 -0.02 1.57 16 28 H 0.06 1.87 8.14 -2.38 -0.02 1.86 16 29 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.06 2.49 5.81 -2.39 -0.01 2.48 16 31 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 2.77 8.14 -2.38 -0.02 2.75 16 33 H 0.02 0.76 8.08 -2.39 -0.02 0.74 16 34 H 0.00 0.03 6.21 -2.39 -0.01 0.01 16 35 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 36 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 37 H 0.07 2.12 8.12 -2.39 -0.02 2.10 16 38 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -64.08 300.78 2.74 -61.34 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: 0.98 Total: 7.85 kcal Atomic # 6 Polarization: -37.48 SS G_CDS: 3.76 Total: -33.73 kcal Atomic # 7 Polarization: -78.31 SS G_CDS: -4.02 Total: -82.34 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -64.08 2.74 -61.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595657900.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.825 kcal (2) G-P(sol) polarization free energy of solvation -64.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds