Wall clock time and date at job start Sun Mar 29 2020 22:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50697 * 119.99877 * 2 1 4 4 N 1.46902 * 109.46717 * 124.87774 * 3 2 1 5 5 C 1.46896 * 111.00237 * 66.99300 * 4 3 2 6 6 C 1.50700 * 109.47439 * 66.04259 * 5 4 3 7 7 H 1.08005 * 120.00067 * 0.02562 * 6 5 4 8 8 C 1.37878 * 120.00527 * 179.97438 * 6 5 4 9 9 N 1.31517 * 119.99416 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00374 * 180.02562 * 8 6 5 11 11 H 1.48504 * 109.47248 * 0.02562 * 10 8 6 12 12 H 1.48497 * 109.47057 * 120.00342 * 10 8 6 13 13 H 1.48497 * 109.47201 * 240.00459 * 10 8 6 14 14 C 1.46897 * 110.99686 * 303.03597 * 4 3 2 15 15 C 1.52998 * 109.47334 * 287.80276 * 14 4 3 16 16 C 1.54265 * 110.03756 * 292.85412 * 15 14 4 17 17 C 1.54964 * 104.15828 * 217.13346 * 16 15 14 18 18 C 1.54888 * 102.77904 * 37.88991 * 17 16 15 19 19 C 1.53871 * 110.03420 * 175.63095 * 15 14 4 20 20 H 1.08004 * 120.00252 * 180.02562 * 1 2 3 21 21 H 1.08001 * 120.00392 * 359.97438 * 1 2 3 22 22 H 1.07998 * 119.99861 * 180.02562 * 2 1 3 23 23 H 1.08996 * 109.47190 * 4.87821 * 3 2 1 24 24 H 1.09006 * 109.47016 * 244.87314 * 3 2 1 25 25 H 1.08997 * 109.47102 * 186.04674 * 5 4 3 26 26 H 1.09004 * 109.47078 * 306.04677 * 5 4 3 27 27 H 0.97005 * 119.99338 * 179.97438 * 9 8 6 28 28 H 1.08993 * 109.47638 * 47.81144 * 14 4 3 29 29 H 1.09007 * 109.46838 * 167.80849 * 14 4 3 30 30 H 1.09007 * 110.01155 * 54.24785 * 15 14 4 31 31 H 1.09002 * 110.48151 * 335.78144 * 16 15 14 32 32 H 1.08996 * 110.48638 * 98.42336 * 16 15 14 33 33 H 1.08993 * 110.71919 * 279.57221 * 17 16 15 34 34 H 1.09001 * 110.91739 * 156.29263 * 17 16 15 35 35 H 1.09001 * 110.48787 * 203.40639 * 18 17 16 36 36 H 1.08993 * 110.60202 * 80.81399 * 18 17 16 37 37 H 1.09000 * 110.03803 * 238.57738 * 19 15 14 38 38 H 1.09000 * 110.03310 * 0.02562 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9941 1.3331 1.1363 5 6 4.0603 0.3367 0.9682 6 6 4.9208 0.7154 -0.2095 7 1 4.6983 1.6074 -0.7763 8 6 5.9930 -0.0762 -0.5630 9 7 6.2643 -1.1622 0.1275 10 14 7.0600 0.3937 -2.0223 11 1 6.5479 1.6501 -2.6259 12 1 8.4588 0.5978 -1.5674 13 1 7.0221 -0.6931 -3.0336 14 6 2.2817 1.1330 2.4052 15 6 1.4737 2.3884 2.7400 16 6 2.4253 3.5626 3.0491 17 6 1.7184 4.3323 4.1933 18 6 1.1090 3.1928 5.0473 19 6 0.6368 2.1535 4.0097 20 1 -0.5401 -0.9353 0.0004 21 1 -0.5401 0.9353 0.0004 22 1 1.8499 -0.9353 -0.0004 23 1 1.3584 2.1317 0.0874 24 1 2.6230 1.4016 -0.9305 25 1 4.6721 0.3037 1.8696 26 1 3.6171 -0.6438 0.7939 27 1 7.0184 -1.7193 -0.1214 28 1 1.6081 0.2811 2.3134 29 1 3.0025 0.9421 3.2004 30 1 0.8216 2.6459 1.9053 31 1 3.3945 3.1907 3.3815 32 1 2.5406 4.2009 2.1731 33 1 0.9357 4.9789 3.7969 34 1 2.4365 4.9097 4.7755 35 1 0.2644 3.5620 5.6291 36 1 1.8636 2.7603 5.7042 37 1 -0.4214 2.2979 3.7915 38 1 0.8065 1.1453 4.3876 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610079993.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:31:53 Heat of formation + Delta-G solvation = 1.933119 kcal Electronic energy + Delta-G solvation = -15761.026986 eV Core-core repulsion = 13409.997657 eV Total energy + Delta-G solvation = -2351.029329 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.56093 -36.50234 -32.92601 -32.07008 -29.66699 -28.37198 -26.72159 -25.44559 -23.02694 -20.99709 -20.35927 -19.48434 -18.45137 -16.32760 -15.68297 -15.04901 -14.73544 -14.50594 -14.23803 -13.53506 -13.12205 -13.01245 -12.84660 -12.08946 -11.38497 -11.22134 -11.06770 -10.94141 -10.84692 -10.82730 -10.73210 -10.60715 -10.49226 -10.39294 -10.19362 -10.01245 -9.64467 -9.18421 -8.80468 -8.41875 -7.14919 -6.00938 -4.01645 2.76450 3.31835 3.39391 3.44156 4.44123 4.80230 4.93479 4.99048 5.23743 5.35053 5.48810 5.56900 5.69272 5.72263 5.86289 5.86690 5.94264 5.98397 6.07808 6.12511 6.14486 6.29717 6.38351 6.44982 6.46478 6.55510 6.69986 6.72470 6.86568 7.10369 7.15697 7.40037 7.42016 7.84020 8.13836 8.24928 8.59754 9.06448 9.62447 11.09931 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.028955 B = 0.007258 C = 0.006424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 966.772341 B = 3856.886668 C = 4357.417062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.157 4.157 3 C 0.085 3.915 4 N -0.527 5.527 5 C 0.190 3.810 6 C -0.504 4.504 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.895 3.105 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.286 1.286 14 C 0.060 3.940 15 C -0.084 4.084 16 C -0.103 4.103 17 C -0.129 4.129 18 C -0.123 4.123 19 C -0.120 4.120 20 H 0.086 0.914 21 H 0.089 0.911 22 H 0.108 0.892 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.028 0.972 26 H -0.006 1.006 27 H 0.260 0.740 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.649 6.348 5.645 13.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.177 4.177 3 C -0.043 4.043 4 N -0.249 5.249 5 C 0.065 3.935 6 C -0.542 4.542 7 H 0.081 0.919 8 C -0.147 4.147 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.197 1.197 12 H -0.211 1.211 13 H -0.212 1.212 14 C -0.069 4.069 15 C -0.103 4.103 16 C -0.140 4.140 17 C -0.166 4.166 18 C -0.161 4.161 19 C -0.158 4.158 20 H 0.104 0.896 21 H 0.107 0.893 22 H 0.126 0.874 23 H 0.077 0.923 24 H 0.108 0.892 25 H 0.046 0.954 26 H 0.012 0.988 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.266 6.673 5.672 13.494 hybrid contribution 0.267 -0.869 -0.805 1.214 sum -9.999 5.804 4.867 12.544 Atomic orbital electron populations 1.23634 0.95929 1.00681 1.05102 1.23897 0.96231 1.01523 0.96028 1.21321 0.94017 0.92179 0.96809 1.62347 1.10867 1.52126 0.99570 1.19757 0.88013 0.88286 0.97475 1.21208 1.11321 1.08940 1.12751 0.91865 1.24983 0.97606 0.95048 0.97023 1.69975 1.29237 1.14671 1.40055 0.86477 0.80320 0.78401 0.82444 1.19666 1.21067 1.21182 1.22204 0.96188 0.94954 0.93527 1.21723 0.96236 0.95895 0.96438 1.22250 0.98510 0.95993 0.97270 1.22562 0.99398 0.97237 0.97435 1.22335 0.99824 0.96364 0.97545 1.22184 0.99035 0.99055 0.95556 0.89605 0.89280 0.87357 0.92312 0.89172 0.95442 0.98801 0.93060 0.95491 0.91807 0.91624 0.91275 0.91782 0.92190 0.92174 0.92492 0.91883 0.92468 0.92039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.31 14.32 29.02 0.42 -2.89 16 2 C -0.16 -2.87 7.34 -36.03 -0.26 -3.13 16 3 C 0.08 1.64 5.47 -4.98 -0.03 1.61 16 4 N -0.53 -11.16 4.46 -237.52 -1.06 -12.22 16 5 C 0.19 4.89 4.58 -4.98 -0.02 4.87 16 6 C -0.50 -14.02 8.41 -34.44 -0.29 -14.31 16 7 H 0.06 1.75 7.15 -52.48 -0.38 1.37 16 8 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.75 13.29 55.43 0.74 -26.02 16 10 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 11 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 C 0.06 1.09 3.86 -3.83 -0.01 1.07 16 15 C -0.08 -1.27 2.95 -89.50 -0.26 -1.53 16 16 C -0.10 -1.52 6.18 -25.03 -0.15 -1.68 16 17 C -0.13 -1.56 6.91 -24.70 -0.17 -1.73 16 18 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 19 C -0.12 -1.54 6.46 -25.61 -0.17 -1.71 16 20 H 0.09 1.20 8.06 -52.48 -0.42 0.78 16 21 H 0.09 1.25 7.84 -52.49 -0.41 0.84 16 22 H 0.11 2.21 6.88 -52.49 -0.36 1.85 16 23 H 0.06 1.02 6.39 -51.93 -0.33 0.69 16 24 H 0.09 1.91 6.70 -51.93 -0.35 1.57 16 25 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 26 H -0.01 -0.16 6.48 -51.93 -0.34 -0.49 16 27 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 28 H 0.03 0.50 6.59 -51.93 -0.34 0.15 16 29 H 0.06 1.21 7.68 -51.93 -0.40 0.81 16 30 H 0.07 1.01 6.67 -51.92 -0.35 0.66 16 31 H 0.07 1.14 7.77 -51.93 -0.40 0.73 16 32 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.80 7.67 -51.93 -0.40 0.40 16 LS Contribution 298.27 15.07 4.49 4.49 Total: -1.00 -28.54 298.27 -8.63 -37.17 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -6.56 Total: -0.49 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: -1.23 Total: -19.59 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.32 Total: -38.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -28.54 -8.63 -37.17 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610079993.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.101 kcal (2) G-P(sol) polarization free energy of solvation -28.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds