Wall clock time and date at job start Sun Mar 29 2020 21:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46505 * 119.99899 * 2 1 4 4 C 1.52997 * 109.47212 * 270.00188 * 3 2 1 5 5 C 1.52992 * 109.47482 * 179.97438 * 4 3 2 6 6 C 1.50698 * 109.47592 * 179.97438 * 5 4 3 7 7 H 1.08003 * 120.00057 * 0.02562 * 6 5 4 8 8 C 1.37876 * 120.00356 * 179.97438 * 6 5 4 9 9 N 1.31519 * 119.99989 * 0.02562 * 8 6 5 10 10 Si 1.86801 * 120.00117 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46778 * 60.00380 * 10 8 6 12 12 H 1.48503 * 109.47134 * 180.02562 * 10 8 6 13 13 H 1.48496 * 109.47402 * 300.00322 * 10 8 6 14 14 C 1.39991 * 120.00386 * 180.02562 * 2 1 3 15 15 C 1.40423 * 125.97713 * 184.71731 * 14 2 1 16 16 C 1.35248 * 107.86372 * 179.82451 * 15 14 2 17 17 N 1.34962 * 107.85971 * 0.42813 * 16 15 14 18 18 C 1.46497 * 125.97030 * 179.72814 * 17 16 15 19 19 N 1.31223 * 125.97167 * 5.01852 * 14 2 1 20 20 H 1.08994 * 109.47405 * 90.00269 * 1 2 3 21 21 H 1.09006 * 109.46911 * 209.99921 * 1 2 3 22 22 H 1.08996 * 109.47170 * 329.99434 * 1 2 3 23 23 H 1.09002 * 109.47068 * 30.00248 * 3 2 1 24 24 H 1.09001 * 109.47372 * 150.00336 * 3 2 1 25 25 H 1.09002 * 109.47153 * 300.00008 * 4 3 2 26 26 H 1.08998 * 109.47533 * 59.99637 * 4 3 2 27 27 H 1.09002 * 109.47103 * 300.00247 * 5 4 3 28 28 H 1.09001 * 109.47066 * 60.00169 * 5 4 3 29 29 H 0.96996 * 119.99885 * 179.97438 * 9 8 6 30 30 H 1.08005 * 126.06959 * 359.95918 * 15 14 2 31 31 H 1.07998 * 126.07201 * 180.13093 * 16 15 14 32 32 H 1.09008 * 109.47245 * 269.97559 * 18 17 16 33 33 H 1.08995 * 109.47458 * 29.97306 * 18 17 16 34 34 H 1.09001 * 109.47131 * 149.97961 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 6 3.2168 3.0358 -1.4425 6 6 3.4685 3.4706 -2.8633 7 1 3.1179 2.8626 -3.6843 8 6 4.1454 4.6450 -3.1153 9 7 4.5719 5.3856 -2.1157 10 14 4.4580 5.1835 -4.8765 11 1 3.1609 5.3595 -5.5778 12 1 5.1998 6.4700 -4.8765 13 1 5.2621 4.1490 -5.5752 14 6 2.1650 -1.2123 -0.0005 15 6 3.5582 -1.3604 0.0928 16 6 3.8379 -2.6833 0.0616 17 7 2.6706 -3.3504 -0.0568 18 6 2.5148 -4.8050 -0.1332 19 7 1.6342 -2.4088 -0.0940 20 1 -0.3634 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5139 22 1 -0.3633 0.8899 0.5139 23 1 1.6083 2.0284 0.5139 24 1 3.1499 1.1385 0.5138 25 1 3.0415 0.9509 -1.9563 26 1 1.5000 1.8408 -1.9563 27 1 2.6273 3.7952 -0.9288 28 1 4.1692 2.9059 -0.9286 29 1 5.0484 6.2116 -2.2929 30 1 4.2786 -0.5601 0.1771 31 1 4.8210 -3.1269 0.1164 32 1 2.5537 -5.1204 -1.1759 33 1 3.3198 -5.2864 0.4221 34 1 1.5550 -5.0907 0.2972 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000614236414.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:32 Heat of formation + Delta-G solvation = 57.637547 kcal Electronic energy + Delta-G solvation = -14819.294393 eV Core-core repulsion = 12367.140246 eV Total energy + Delta-G solvation = -2452.154147 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.89753 -38.12791 -35.64590 -33.76739 -32.82347 -30.89660 -28.95599 -27.90027 -26.03468 -24.39158 -22.21127 -21.63720 -20.41393 -18.51190 -18.09227 -16.60837 -16.52974 -16.31967 -15.78548 -15.38637 -15.14326 -14.51862 -14.29346 -13.79685 -13.65007 -13.38249 -13.17280 -13.06022 -12.90166 -12.59256 -12.53804 -12.43702 -11.53631 -11.50740 -11.32180 -11.26929 -10.78553 -10.52759 -9.59241 -8.37647 -8.16472 -6.28764 1.12239 1.40211 1.42987 1.51023 1.59015 2.11212 2.41844 2.54728 3.14546 3.84847 4.04977 4.19017 4.37505 4.42934 4.53439 4.64277 4.69392 4.74368 4.76355 4.85481 4.91923 4.94556 4.95471 5.15001 5.23697 5.41318 5.53241 5.76396 5.87427 6.12263 6.29433 6.37194 6.66631 6.86564 7.08679 7.39822 8.93067 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.038931 B = 0.005247 C = 0.004972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 719.045096 B = 5335.264667 C = 5630.513614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.614 5.614 3 C 0.148 3.852 4 C -0.107 4.107 5 C 0.029 3.971 6 C -0.545 4.545 7 H 0.051 0.949 8 C 0.004 3.996 9 N -0.930 5.930 10 Si 0.961 3.039 11 H -0.269 1.269 12 H -0.279 1.279 13 H -0.269 1.269 14 C 0.324 3.676 15 C -0.338 4.338 16 C 0.091 3.909 17 N -0.388 5.388 18 C 0.102 3.898 19 N -0.393 5.393 20 H 0.035 0.965 21 H 0.064 0.936 22 H 0.081 0.919 23 H 0.084 0.916 24 H 0.070 0.930 25 H 0.036 0.964 26 H 0.043 0.957 27 H 0.000 1.000 28 H -0.002 1.002 29 H 0.264 0.736 30 H 0.140 0.860 31 H 0.216 0.784 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -17.839 5.657 18.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.335 5.335 3 C 0.025 3.975 4 C -0.146 4.146 5 C -0.009 4.009 6 C -0.583 4.583 7 H 0.070 0.930 8 C -0.194 4.194 9 N -0.570 5.570 10 Si 0.786 3.214 11 H -0.194 1.194 12 H -0.205 1.205 13 H -0.194 1.194 14 C 0.068 3.932 15 C -0.370 4.370 16 C -0.056 4.056 17 N -0.170 5.170 18 C -0.038 4.038 19 N -0.227 5.227 20 H 0.053 0.947 21 H 0.083 0.917 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.089 0.911 25 H 0.055 0.945 26 H 0.062 0.938 27 H 0.018 0.982 28 H 0.016 0.984 29 H 0.073 0.927 30 H 0.158 0.842 31 H 0.233 0.767 32 H 0.097 0.903 33 H 0.136 0.864 34 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -4.095 -18.418 5.598 19.680 hybrid contribution 0.956 1.147 -0.860 1.723 sum -3.138 -17.271 4.738 18.182 Atomic orbital electron populations 1.21519 0.78496 1.02734 1.00675 1.45883 1.05149 1.00736 1.81769 1.21388 0.96730 0.83179 0.96211 1.21796 0.99017 0.97117 0.96657 1.18920 0.94290 0.92129 0.95512 1.21626 1.36183 1.06733 0.93775 0.93042 1.25904 0.95329 0.96585 1.01599 1.70070 1.39277 1.14680 1.32970 0.85564 0.78582 0.77616 0.79665 1.19378 1.20457 1.19447 1.19560 0.91256 0.86948 0.95422 1.21363 0.94171 0.97791 1.23694 1.22933 0.93098 0.91527 0.98052 1.48382 1.03218 1.07203 1.58247 1.22082 1.05474 0.72196 1.04039 1.77257 1.12204 0.96576 1.36623 0.94661 0.91707 0.90035 0.89772 0.91120 0.94521 0.93846 0.98210 0.98403 0.92687 0.84191 0.76738 0.90343 0.86355 0.89707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 3.15 10.62 127.77 1.36 4.50 16 2 N -0.61 -21.14 3.02 -727.51 -2.19 -23.33 16 3 C 0.15 5.35 5.52 86.38 0.48 5.82 16 4 C -0.11 -4.67 5.48 30.59 0.17 -4.50 16 5 C 0.03 1.56 4.97 29.84 0.15 1.71 16 6 C -0.55 -31.92 9.11 25.60 0.23 -31.69 16 7 H 0.05 2.95 7.74 -2.91 -0.02 2.93 16 8 C 0.00 0.22 5.46 84.65 0.46 0.69 16 9 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 10 Si 0.96 44.98 29.54 68.60 2.03 47.01 16 11 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 12 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 C 0.32 11.40 7.59 133.39 1.01 12.41 16 15 C -0.34 -10.68 9.94 22.11 0.22 -10.46 16 16 C 0.09 2.17 11.48 83.52 0.96 3.13 16 17 N -0.39 -9.80 4.01 -369.62 -1.48 -11.28 16 18 C 0.10 1.40 11.47 127.77 1.46 2.86 16 19 N -0.39 -13.19 12.00 -54.55 -0.65 -13.84 16 20 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.06 1.81 7.75 -2.38 -0.02 1.79 16 22 H 0.08 2.01 7.89 -2.39 -0.02 1.99 16 23 H 0.08 2.80 7.89 -2.39 -0.02 2.78 16 24 H 0.07 2.52 6.77 -2.39 -0.02 2.51 16 25 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 28 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 29 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 30 H 0.14 4.46 7.22 -2.91 -0.02 4.44 16 31 H 0.22 2.87 8.06 -2.91 -0.02 2.84 16 32 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.03 291.57 5.54 -67.49 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.06 Total: 5.95 kcal Atomic # 6 Polarization: -22.02 SS G_CDS: 6.50 Total: -15.52 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -4.05 Total: -104.92 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -73.03 5.54 -67.49 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000614236414.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.131 kcal (2) G-P(sol) polarization free energy of solvation -73.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds