Wall clock time and date at job start Sun Mar 29 2020 21:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.59298 * 2 1 4 4 C 1.54166 * 110.65761 * 122.99157 * 2 1 3 5 5 N 1.47335 * 103.82431 * 118.65375 * 4 2 1 6 6 C 1.29314 * 110.12588 * 359.86264 * 5 4 2 7 7 N 1.37487 * 122.86673 * 180.02562 * 6 5 4 8 8 C 1.46499 * 120.00359 * 0.02562 * 7 6 5 9 9 C 1.52999 * 109.47229 * 182.83473 * 8 7 6 10 10 C 1.50694 * 115.54871 * 39.68358 * 9 8 7 11 11 H 1.08006 * 120.00126 * 264.47384 * 10 9 8 12 12 C 1.37879 * 119.99960 * 84.47896 * 10 9 8 13 13 N 1.31514 * 120.00104 * 353.09736 * 12 10 9 14 14 Si 1.86804 * 119.99988 * 173.09731 * 12 10 9 15 15 H 1.48508 * 109.47092 * 89.99650 * 14 12 10 16 16 H 1.48499 * 109.47128 * 209.99983 * 14 12 10 17 17 H 1.48496 * 109.46954 * 329.99902 * 14 12 10 18 18 C 1.53000 * 117.49732 * 253.97719 * 9 8 7 19 19 C 1.52995 * 117.49749 * 185.35639 * 9 8 7 20 20 N 1.36784 * 114.26394 * 0.08768 * 6 5 4 21 21 H 1.08993 * 109.47451 * 179.29612 * 1 2 3 22 22 H 1.09008 * 109.46633 * 299.29757 * 1 2 3 23 23 H 1.09002 * 109.47303 * 59.29373 * 1 2 3 24 24 H 1.09002 * 110.52121 * 237.23713 * 4 2 1 25 25 H 1.09000 * 110.52881 * 359.97438 * 4 2 1 26 26 H 0.96997 * 119.99562 * 180.02562 * 7 6 5 27 27 H 1.08996 * 109.46836 * 302.83597 * 8 7 6 28 28 H 1.08996 * 109.46892 * 62.83188 * 8 7 6 29 29 H 0.97003 * 119.99822 * 185.04453 * 13 12 10 30 30 H 1.09004 * 117.49780 * 359.97438 * 18 9 8 31 31 H 1.08995 * 117.49859 * 145.01761 * 18 9 8 32 32 H 1.09000 * 117.50066 * 214.97969 * 19 9 8 33 33 H 1.09001 * 117.50114 * 359.97438 * 19 9 8 34 34 H 0.96997 * 125.82136 * 179.97438 * 20 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9134 1.0203 0.0000 4 6 2.0739 -0.7855 1.2099 5 7 2.8400 -1.8861 0.5996 6 6 2.7832 -1.8062 -0.6898 7 7 3.4081 -2.7053 -1.5213 8 6 4.1795 -3.8141 -0.9539 9 6 4.8248 -4.6177 -2.0848 10 6 5.3729 -3.8047 -3.2291 11 1 4.7727 -3.6421 -4.1122 12 6 6.6406 -3.2685 -3.1488 13 7 7.3189 -3.3496 -2.0250 14 14 7.3947 -2.4269 -4.6363 15 1 7.0514 -0.9822 -4.6146 16 1 8.8707 -2.5856 -4.5994 17 1 6.8614 -3.0437 -5.8773 18 6 4.2207 -5.9843 -2.4140 19 6 5.5734 -5.8966 -1.7045 20 7 2.0494 -0.7501 -1.1558 21 1 -0.3634 -1.0275 -0.0126 22 1 -0.3633 0.5029 0.8963 23 1 -0.3634 0.5248 -0.8836 24 1 2.7256 -0.1540 1.8138 25 1 1.2536 -1.1759 1.8122 26 1 3.3382 -2.6055 -2.4836 27 1 4.9566 -3.4187 -0.2999 28 1 3.5166 -4.4617 -0.3803 29 1 8.1797 -2.9094 -1.9452 30 1 3.3639 -6.3110 -1.8247 31 1 4.2196 -6.2955 -3.4586 32 1 6.4622 -6.1503 -2.2822 33 1 5.6066 -6.1653 -0.6486 34 1 1.8975 -0.5321 -2.0887 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849025949.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:30:23 Heat of formation + Delta-G solvation = 40.569067 kcal Electronic energy + Delta-G solvation = -15367.999877 eV Core-core repulsion = 12915.105585 eV Total energy + Delta-G solvation = -2452.894292 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.89788 -38.70503 -35.64833 -33.97902 -32.51515 -31.61202 -27.89139 -27.01009 -26.10599 -22.89705 -22.20308 -21.09923 -20.75656 -18.81903 -17.94925 -16.77001 -16.61219 -16.06725 -15.47361 -15.10734 -14.93010 -14.39048 -14.05713 -13.77213 -13.42634 -13.21754 -12.97492 -12.85793 -12.61473 -12.58826 -12.34437 -12.28050 -11.95153 -11.39246 -10.80895 -10.43364 -10.31734 -9.99267 -9.41018 -8.54790 -8.07402 -6.20574 1.41054 1.44852 1.52756 2.07693 2.19004 2.43005 3.17791 3.32564 3.55118 3.74611 4.16866 4.27571 4.33701 4.57679 4.63084 4.75340 4.78586 4.81187 4.86705 4.99018 5.04678 5.08753 5.20415 5.32566 5.35133 5.58219 5.60401 5.65886 5.79106 6.28448 6.42176 6.47055 6.86690 7.36837 7.48784 7.71997 8.99869 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.028522 B = 0.007996 C = 0.006980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.454108 B = 3501.082220 C = 4010.291018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.114 3.886 3 H 0.089 0.911 4 C 0.045 3.955 5 N -0.695 5.695 6 C 0.594 3.406 7 N -0.699 5.699 8 C 0.215 3.785 9 C 0.003 3.997 10 C -0.503 4.503 11 H 0.062 0.938 12 C 0.030 3.970 13 N -0.903 5.903 14 Si 0.947 3.053 15 H -0.279 1.279 16 H -0.291 1.291 17 H -0.265 1.265 18 C -0.182 4.182 19 C -0.161 4.161 20 N -0.761 5.761 21 H 0.044 0.956 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.408 0.592 27 H 0.022 0.978 28 H 0.032 0.968 29 H 0.257 0.743 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.444 5.809 0.648 12.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.008 3.992 3 H 0.107 0.893 4 C -0.086 4.086 5 N -0.442 5.442 6 C 0.230 3.770 7 N -0.339 5.339 8 C 0.089 3.911 9 C 0.002 3.998 10 C -0.541 4.541 11 H 0.080 0.920 12 C -0.171 4.171 13 N -0.540 5.540 14 Si 0.774 3.226 15 H -0.205 1.205 16 H -0.217 1.217 17 H -0.189 1.189 18 C -0.219 4.219 19 C -0.199 4.199 20 N -0.411 5.411 21 H 0.063 0.937 22 H 0.105 0.895 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.096 0.904 26 H 0.245 0.755 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -10.841 5.226 1.637 12.146 hybrid contribution 0.514 1.071 -1.715 2.086 sum -10.327 6.297 -0.079 12.096 Atomic orbital electron populations 1.22046 0.92686 1.01936 1.03602 1.22168 0.95656 0.95674 0.85722 0.89308 1.22958 0.96987 0.92082 0.96575 1.74581 1.36601 1.29539 1.03500 1.19783 0.85384 0.83203 0.88674 1.43650 1.54633 1.28139 1.07447 1.20220 0.91019 0.86037 0.93790 1.19180 0.98565 0.86456 0.95576 1.20537 0.99201 1.33324 1.01035 0.91991 1.25654 0.97296 0.96478 0.97661 1.70117 1.14302 1.43091 1.26499 0.85727 0.77400 0.78718 0.80782 1.20518 1.21728 1.18918 1.23070 0.95607 1.03157 1.00085 1.22416 0.94401 1.04895 0.98211 1.45880 1.56961 1.28968 1.09252 0.93676 0.89450 0.91212 0.91450 0.90413 0.75497 0.95920 0.94946 0.93357 0.89370 0.89874 0.91933 0.91078 0.74562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.63 9.42 71.98 0.68 -1.95 16 2 C 0.11 2.81 4.41 45.24 0.20 3.01 16 3 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 4 C 0.05 1.39 7.72 86.61 0.67 2.06 16 5 N -0.69 -28.67 11.03 -346.93 -3.83 -32.50 16 6 C 0.59 23.06 8.63 261.32 2.25 25.31 16 7 N -0.70 -29.14 5.43 -350.78 -1.90 -31.05 16 8 C 0.21 10.05 5.90 86.38 0.51 10.56 16 9 C 0.00 0.14 1.70 -52.93 -0.09 0.05 16 10 C -0.50 -25.62 7.46 25.60 0.19 -25.43 16 11 H 0.06 3.05 7.82 -2.91 -0.02 3.02 16 12 C 0.03 1.61 5.39 84.66 0.46 2.07 16 13 N -0.90 -51.34 12.97 21.45 0.28 -51.07 16 14 Si 0.95 42.08 29.55 68.60 2.03 44.10 16 15 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 16 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 17 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 18 C -0.18 -7.49 9.88 30.59 0.30 -7.19 16 19 C -0.16 -7.48 9.51 30.59 0.29 -7.19 16 20 N -0.76 -22.32 6.22 -326.78 -2.03 -24.35 16 21 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 23 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 25 H 0.08 2.17 7.74 -2.39 -0.02 2.15 16 26 H 0.41 16.26 7.61 -92.71 -0.71 15.55 16 27 H 0.02 1.24 8.14 -2.39 -0.02 1.22 16 28 H 0.03 1.48 7.94 -2.39 -0.02 1.46 16 29 H 0.26 14.19 8.32 -92.71 -0.77 13.42 16 30 H 0.09 3.24 8.08 -2.38 -0.02 3.22 16 31 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 32 H 0.06 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 34 H 0.42 10.17 8.96 -92.71 -0.83 9.34 16 Total: -1.00 -61.59 286.28 -0.44 -62.02 By element: Atomic # 1 Polarization: 31.98 SS G_CDS: -0.44 Total: 31.53 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 5.46 Total: 1.30 kcal Atomic # 7 Polarization: -131.47 SS G_CDS: -7.48 Total: -138.96 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.10 kcal Total: -61.59 -0.44 -62.02 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849025949.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.593 kcal (2) G-P(sol) polarization free energy of solvation -61.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds