Wall clock time and date at job start Sun Mar 29 2020 21:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47398 * 2 1 4 4 C 1.53002 * 109.47233 * 120.00174 * 2 1 3 5 5 C 1.53003 * 109.46754 * 294.99635 * 4 2 1 6 6 C 1.50702 * 109.46809 * 179.97438 * 5 4 2 7 7 H 1.07997 * 120.00460 * 0.02562 * 6 5 4 8 8 C 1.37879 * 119.99585 * 180.02562 * 6 5 4 9 9 N 1.31515 * 120.00393 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99559 * 180.02562 * 8 6 5 11 11 H 1.48488 * 109.47268 * 359.97438 * 10 8 6 12 12 H 1.48503 * 109.46804 * 120.00303 * 10 8 6 13 13 H 1.48497 * 109.46914 * 239.99686 * 10 8 6 14 14 N 1.46499 * 109.46840 * 239.99674 * 2 1 3 15 15 C 1.36878 * 126.40235 * 299.69051 * 14 2 1 16 16 C 1.34669 * 106.82098 * 179.84253 * 15 14 2 17 17 N 1.34121 * 108.01705 * 0.42167 * 16 15 14 18 18 C 1.30499 * 109.26255 * 359.73528 * 17 16 15 19 19 C 1.50694 * 125.65513 * 179.97438 * 18 17 16 20 20 N 1.46903 * 109.46892 * 270.03830 * 19 18 17 21 21 H 1.09001 * 109.47194 * 59.99819 * 1 2 3 22 22 H 1.08992 * 109.47399 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.46724 * 300.00478 * 1 2 3 24 24 H 1.09000 * 109.47059 * 54.99596 * 4 2 1 25 25 H 1.08996 * 109.47073 * 174.99688 * 4 2 1 26 26 H 1.09000 * 109.47306 * 299.99810 * 5 4 2 27 27 H 1.09000 * 109.46927 * 59.99869 * 5 4 2 28 28 H 0.96996 * 119.99734 * 179.97438 * 9 8 6 29 29 H 1.08004 * 126.58883 * 359.97438 * 15 14 2 30 30 H 1.08002 * 125.98931 * 180.11818 * 16 15 14 31 31 H 1.09000 * 109.47587 * 30.03067 * 19 18 17 32 32 H 1.08992 * 109.47496 * 150.03767 * 19 18 17 33 33 H 1.00898 * 110.99966 * 180.02562 * 20 19 18 34 34 H 1.00907 * 110.99965 * 303.95476 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6353 0.0690 2.4953 6 6 2.1371 -0.6418 3.7258 7 1 2.6898 -1.5646 3.6288 8 6 1.8906 -0.1139 4.9754 9 7 1.2172 1.0095 5.0937 10 14 2.5133 -0.9946 6.5007 11 1 3.2361 -2.2281 6.0996 12 1 3.4349 -0.1006 7.2468 13 1 1.3632 -1.3552 7.3681 14 7 2.0183 -0.6907 -1.1961 15 6 1.7745 -1.9934 -1.5383 16 6 2.4053 -2.2138 -2.7076 17 7 3.0251 -1.0793 -3.0648 18 6 2.7979 -0.1626 -2.1642 19 6 3.3193 1.2508 -2.1986 20 7 4.6198 1.3096 -1.5177 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 1.6054 -1.7198 1.2951 25 1 3.1263 -0.7995 1.2055 26 1 2.0700 1.0675 2.4494 27 1 0.5490 0.1472 2.5389 28 1 1.0435 1.3806 5.9728 29 1 1.1872 -2.7068 -0.9792 30 1 2.4147 -3.1428 -3.2583 31 1 3.4368 1.5698 -3.2342 32 1 2.6144 1.9106 -1.6929 33 1 4.9906 2.2479 -1.5269 34 1 4.5504 0.9577 -0.5746 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172476712.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:24 Heat of formation + Delta-G solvation = 41.434988 kcal Electronic energy + Delta-G solvation = -15265.740824 eV Core-core repulsion = 12812.884081 eV Total energy + Delta-G solvation = -2452.856743 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 223.138 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88915 -36.30901 -34.68024 -33.19381 -31.07197 -29.27722 -28.77234 -25.55239 -24.86948 -23.01166 -21.39424 -19.97573 -19.04490 -17.15354 -16.25993 -15.78920 -15.22616 -14.69575 -14.56223 -14.13192 -13.90072 -13.36996 -12.91122 -12.80685 -12.47920 -12.28209 -12.07707 -11.56860 -11.36870 -10.98198 -10.75866 -10.68335 -10.00511 -9.90663 -9.57503 -9.36829 -9.03029 -8.79640 -8.48879 -8.14385 -6.14541 -4.17459 2.30698 3.05869 3.22845 3.31142 3.35402 3.37119 4.34978 4.51563 4.73812 4.84562 4.97529 5.21082 5.22566 5.32425 5.42183 5.54225 5.66924 5.84439 5.93865 6.01721 6.23563 6.28276 6.44488 6.63987 6.79214 6.99030 7.03149 7.35377 7.45585 7.50684 7.55995 7.83159 8.24628 8.38224 8.88764 9.47951 10.96631 Molecular weight = 223.14amu Principal moments of inertia in cm(-1) A = 0.035595 B = 0.006257 C = 0.006045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.436350 B = 4474.039852 C = 4630.884692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.123 3.877 3 H 0.092 0.908 4 C -0.115 4.115 5 C 0.025 3.975 6 C -0.523 4.523 7 H 0.056 0.944 8 C 0.059 3.941 9 N -0.895 5.895 10 Si 0.892 3.108 11 H -0.272 1.272 12 H -0.283 1.283 13 H -0.283 1.283 14 N -0.438 5.438 15 C -0.044 4.044 16 C -0.042 4.042 17 N -0.482 5.482 18 C 0.196 3.804 19 C 0.151 3.849 20 N -0.842 5.842 21 H 0.052 0.948 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.058 0.942 25 H 0.056 0.944 26 H 0.016 0.984 27 H 0.023 0.977 28 H 0.261 0.739 29 H 0.169 0.831 30 H 0.165 0.835 31 H 0.098 0.902 32 H 0.042 0.958 33 H 0.347 0.653 34 H 0.346 0.654 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.209 -0.124 -10.882 10.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.021 3.979 3 H 0.110 0.890 4 C -0.154 4.154 5 C -0.012 4.012 6 C -0.561 4.561 7 H 0.074 0.926 8 C -0.143 4.143 9 N -0.534 5.534 10 Si 0.720 3.280 11 H -0.197 1.197 12 H -0.209 1.209 13 H -0.209 1.209 14 N -0.120 5.120 15 C -0.179 4.179 16 C -0.191 4.191 17 N -0.202 5.202 18 C -0.066 4.066 19 C 0.019 3.981 20 N -0.373 5.373 21 H 0.071 0.929 22 H 0.080 0.920 23 H 0.107 0.893 24 H 0.077 0.923 25 H 0.075 0.925 26 H 0.035 0.965 27 H 0.041 0.959 28 H 0.071 0.929 29 H 0.186 0.814 30 H 0.182 0.818 31 H 0.117 0.883 32 H 0.060 0.940 33 H 0.160 0.840 34 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.380 -0.296 -11.903 11.913 hybrid contribution -0.725 -0.044 2.401 2.509 sum -0.345 -0.340 -9.502 9.515 Atomic orbital electron populations 1.22160 0.93396 1.03057 1.02934 1.21840 0.95696 0.96901 0.83445 0.88952 1.22050 1.00353 0.99733 0.93238 1.19126 0.97117 0.94973 0.89982 1.21212 1.35378 1.08605 0.90937 0.92562 1.25003 0.95080 0.94964 0.99226 1.69954 1.40197 1.19453 1.23763 0.86522 0.78688 0.79807 0.82963 1.19678 1.20892 1.20906 1.45825 1.37239 1.10244 1.18712 1.22619 1.08019 0.86956 1.00280 1.22197 1.02325 0.97890 0.96703 1.70144 1.22647 1.00002 1.27381 1.22925 0.98193 0.97448 0.88041 1.19935 0.89690 0.87410 1.01094 1.58620 1.25755 1.29087 1.23882 0.92936 0.91968 0.89318 0.92341 0.92534 0.96536 0.95864 0.92899 0.81352 0.81776 0.88338 0.94047 0.83969 0.84114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.28 9.01 37.16 0.33 -1.94 16 2 C 0.12 1.93 2.99 -67.93 -0.20 1.73 16 3 H 0.09 1.40 6.67 -51.93 -0.35 1.05 16 4 C -0.12 -2.19 4.62 -26.73 -0.12 -2.31 16 5 C 0.03 0.60 4.73 -27.88 -0.13 0.47 16 6 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 7 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 8 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 9 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 10 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 14 N -0.44 -6.85 2.61 -106.83 -0.28 -7.13 16 15 C -0.04 -0.66 10.70 -16.56 -0.18 -0.84 16 16 C -0.04 -0.65 11.87 -17.82 -0.21 -0.86 16 17 N -0.48 -8.40 11.25 -10.82 -0.12 -8.53 16 18 C 0.20 3.15 7.42 -155.41 -1.15 2.00 16 19 C 0.15 1.96 6.93 -4.98 -0.03 1.93 16 20 N -0.84 -10.66 9.61 -11.41 -0.11 -10.77 16 21 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.06 0.87 7.96 -51.93 -0.41 0.46 16 23 H 0.09 1.37 6.57 -51.93 -0.34 1.03 16 24 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 27 H 0.02 0.57 6.56 -51.93 -0.34 0.22 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.17 2.17 8.06 -52.48 -0.42 1.74 16 30 H 0.16 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 32 H 0.04 0.48 7.08 -51.93 -0.37 0.11 16 33 H 0.35 3.40 9.08 -39.29 -0.36 3.05 16 34 H 0.35 4.68 8.99 -39.29 -0.35 4.33 16 LS Contribution 286.16 15.07 4.31 4.31 Total: -1.00 -30.60 286.16 -7.61 -38.20 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.02 Total: 5.55 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -2.11 Total: -12.71 kcal Atomic # 7 Polarization: -51.56 SS G_CDS: 0.23 Total: -51.33 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -30.60 -7.61 -38.20 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172476712.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.639 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds