Wall clock time and date at job start Sun Mar 29 2020 22:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47060 * 2 1 4 4 H 1.08997 * 110.43909 * 56.08656 * 3 2 1 5 5 C 1.54266 * 110.48454 * 293.54147 * 3 2 1 6 6 C 1.53870 * 106.59995 * 217.71281 * 5 3 2 7 7 C 1.54267 * 106.59832 * 0.02562 * 6 5 3 8 8 H 1.09002 * 110.48206 * 264.92752 * 7 6 5 9 9 N 1.46904 * 110.48671 * 142.28926 * 7 6 5 10 10 C 1.47476 * 111.00056 * 157.42475 * 9 7 6 11 11 C 1.53513 * 87.93394 * 221.29268 * 10 9 7 12 12 C 1.50697 * 114.34537 * 139.68174 * 11 10 9 13 13 H 1.08004 * 119.99977 * 266.08417 * 12 11 10 14 14 C 1.37874 * 120.00040 * 86.07450 * 12 11 10 15 15 N 1.31514 * 119.99769 * 0.02562 * 14 12 11 16 16 Si 1.86804 * 120.00144 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.46940 * 0.02562 * 16 14 12 18 18 H 1.48497 * 109.46965 * 120.00394 * 16 14 12 19 19 H 1.48500 * 109.46948 * 240.00706 * 16 14 12 20 20 C 1.47473 * 111.00224 * 61.44889 * 9 7 6 21 21 C 1.54881 * 104.19534 * 23.60738 * 7 6 5 22 22 H 1.09002 * 109.47153 * 300.00319 * 1 2 3 23 23 H 1.08998 * 109.47533 * 59.99948 * 1 2 3 24 24 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47153 * 239.99681 * 2 1 3 26 26 H 1.09001 * 109.46832 * 119.99872 * 2 1 3 27 27 H 1.08996 * 110.03361 * 337.00404 * 5 3 2 28 28 H 1.09003 * 110.03246 * 98.38279 * 5 3 2 29 29 H 1.09008 * 110.03284 * 119.28691 * 6 5 3 30 30 H 1.09005 * 110.03334 * 240.71695 * 6 5 3 31 31 H 1.09000 * 113.47409 * 336.05997 * 10 9 7 32 32 H 1.09002 * 113.47797 * 106.52925 * 10 9 7 33 33 H 1.09000 * 114.17332 * 272.38148 * 11 10 9 34 34 H 0.97006 * 119.99741 * 179.97438 * 15 14 12 35 35 H 1.09001 * 113.48141 * 253.47186 * 20 9 7 36 36 H 1.09007 * 113.47747 * 23.94393 * 20 9 7 37 37 H 1.09002 * 110.75677 * 203.74035 * 21 7 6 38 38 H 1.09006 * 110.75763 * 80.37501 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6296 1.9913 0.8476 5 6 1.6757 2.1439 -1.3248 6 6 2.8695 3.0440 -1.6884 7 6 3.9179 2.8578 -0.5721 8 1 3.8129 3.6363 0.1835 9 7 5.2749 2.8653 -1.1347 10 6 6.2706 3.2257 -0.1083 11 6 6.9697 4.0880 -1.1687 12 6 7.4794 5.4104 -0.6567 13 1 6.8679 6.2961 -0.7461 14 6 8.7264 5.4896 -0.0739 15 7 9.4712 4.4112 0.0347 16 14 9.3580 7.1288 0.5615 17 1 8.3362 8.1795 0.3220 18 1 9.6279 7.0243 2.0180 19 1 10.6117 7.4856 -0.1499 20 6 5.5678 4.1530 -1.7911 21 6 3.5885 1.4695 0.0305 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3635 -1.0276 0.0005 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5148 1.4028 -2.1077 28 1 0.7782 2.7481 -1.1929 29 1 3.2881 2.7397 -2.6478 30 1 2.5518 4.0858 -1.7327 31 1 5.8543 3.8043 0.7163 32 1 6.8713 2.3812 0.2294 33 1 7.7008 3.5490 -1.7712 34 1 10.3487 4.4670 0.4445 35 1 5.5728 4.0944 -2.8796 36 1 4.9639 4.9791 -1.4155 37 1 3.9560 1.3956 1.0540 38 1 4.0014 0.6722 -0.5877 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173276422.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:22:41 Heat of formation + Delta-G solvation = -10.689327 kcal Electronic energy + Delta-G solvation = -15546.496881 eV Core-core repulsion = 13194.920202 eV Total energy + Delta-G solvation = -2351.576679 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.07192 -38.68205 -34.84146 -33.74086 -30.47265 -29.49854 -27.64770 -26.45944 -25.00095 -23.40280 -21.18228 -20.74044 -20.09302 -18.52585 -17.15747 -16.74292 -16.22929 -15.99882 -15.17438 -14.72202 -14.60246 -14.29294 -13.99033 -13.87292 -13.23492 -13.06123 -12.87974 -12.79046 -12.67318 -12.27790 -12.10589 -11.94129 -11.70228 -11.60466 -11.30008 -11.28525 -11.18576 -11.03387 -10.79373 -10.50768 -9.66864 -8.16592 -6.28333 1.40737 1.42149 1.54208 2.41360 3.12351 3.28820 3.55954 3.75095 3.96060 4.23635 4.28162 4.29340 4.44407 4.49882 4.55900 4.58669 4.67617 4.70033 4.77518 4.85849 4.87871 4.93524 5.07516 5.07802 5.13228 5.18014 5.21458 5.25486 5.31949 5.37764 5.47878 5.57430 5.61260 5.63254 5.83865 6.28853 6.46262 6.81178 7.40369 8.93546 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.061111 B = 0.005286 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.071811 B = 5296.028404 C = 5403.270524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.086 4.086 4 H 0.075 0.925 5 C -0.106 4.106 6 C -0.114 4.114 7 C 0.037 3.963 8 H 0.036 0.964 9 N -0.475 5.475 10 C 0.019 3.981 11 C 0.019 3.981 12 C -0.531 4.531 13 H 0.058 0.942 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.959 3.041 17 H -0.264 1.264 18 H -0.280 1.280 19 H -0.278 1.278 20 C 0.015 3.985 21 C -0.103 4.103 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.030 0.970 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.052 0.948 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.391 -5.422 -0.191 17.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.151 4.151 3 C -0.104 4.104 4 H 0.093 0.907 5 C -0.144 4.144 6 C -0.152 4.152 7 C -0.072 4.072 8 H 0.054 0.946 9 N -0.197 5.197 10 C -0.111 4.111 11 C 0.000 4.000 12 C -0.569 4.569 13 H 0.076 0.924 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.784 3.216 17 H -0.188 1.188 18 H -0.206 1.206 19 H -0.204 1.204 20 C -0.114 4.114 21 C -0.141 4.141 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.048 0.952 34 H 0.072 0.928 35 H 0.089 0.911 36 H 0.075 0.925 37 H 0.071 0.929 38 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -16.222 -6.130 -0.500 17.349 hybrid contribution 0.795 1.458 0.937 1.907 sum -15.428 -4.672 0.438 16.125 Atomic orbital electron populations 1.21761 0.94750 1.01976 1.02111 1.21523 0.96667 0.94976 1.01918 1.21974 0.93463 0.96906 0.98101 0.90682 1.22123 0.96967 0.98234 0.97095 1.22137 0.95071 1.00036 0.97947 1.23168 0.90111 0.97657 0.96303 0.94592 1.68902 1.03486 1.30456 1.16889 1.23722 0.94416 0.97615 0.95329 1.20083 0.91617 0.94746 0.93567 1.21398 1.01809 0.94726 1.39001 0.92371 1.25849 0.96823 0.99933 0.95877 1.70108 1.11222 1.30015 1.44766 0.85488 0.78350 0.79806 0.77911 1.18820 1.20556 1.20395 1.23708 0.97664 0.90805 0.99240 1.22456 0.96298 0.95769 0.99563 0.92629 0.92280 0.92169 0.92102 0.92132 0.90957 0.90618 0.91916 0.92024 0.93643 0.93688 0.95186 0.92807 0.91092 0.92543 0.92893 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 9.76 71.98 0.70 -1.53 16 2 C -0.11 -2.11 5.32 30.59 0.16 -1.95 16 3 C -0.09 -1.90 2.90 -9.71 -0.03 -1.93 16 4 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 5 C -0.11 -2.29 5.50 31.32 0.17 -2.12 16 6 C -0.11 -3.18 5.73 31.32 0.18 -3.00 16 7 C 0.04 1.25 2.25 45.99 0.10 1.35 16 8 H 0.04 1.30 7.55 -2.39 -0.02 1.28 16 9 N -0.48 -19.71 6.14 -896.14 -5.50 -25.21 16 10 C 0.02 0.90 7.25 83.57 0.61 1.50 16 11 C 0.02 1.00 3.76 -11.19 -0.04 0.95 16 12 C -0.53 -29.73 8.83 25.60 0.23 -29.50 16 13 H 0.06 3.17 7.81 -2.91 -0.02 3.14 16 14 C 0.01 0.81 5.46 84.65 0.46 1.28 16 15 N -0.92 -54.89 13.26 21.45 0.28 -54.60 16 16 Si 0.96 43.66 29.54 68.60 2.03 45.69 16 17 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 20 C 0.01 0.63 6.51 83.58 0.54 1.17 16 21 C -0.10 -3.01 5.97 31.89 0.19 -2.82 16 22 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 23 H 0.06 0.84 7.48 -2.39 -0.02 0.83 16 24 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 25 H 0.06 1.16 8.05 -2.39 -0.02 1.14 16 26 H 0.06 1.12 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.45 7.77 -2.39 -0.02 1.43 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.86 8.00 -2.38 -0.02 1.84 16 30 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.05 2.21 7.52 -2.39 -0.02 2.19 16 32 H 0.04 2.28 8.14 -2.39 -0.02 2.26 16 33 H 0.03 1.76 8.11 -2.39 -0.02 1.74 16 34 H 0.26 14.73 8.31 -92.70 -0.77 13.96 16 35 H 0.07 2.88 8.14 -2.39 -0.02 2.86 16 36 H 0.06 2.38 7.87 -2.38 -0.02 2.36 16 37 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.07 2.06 8.06 -2.38 -0.02 2.04 16 Total: -1.00 -60.16 299.33 1.07 -59.09 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: 0.98 Total: 11.64 kcal Atomic # 6 Polarization: -39.88 SS G_CDS: 3.28 Total: -36.60 kcal Atomic # 7 Polarization: -74.59 SS G_CDS: -5.22 Total: -79.81 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -60.16 1.07 -59.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173276422.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.400 kcal (2) G-P(sol) polarization free energy of solvation -60.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds