Wall clock time and date at job start Sun Mar 29 2020 21:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 120.00320 * 2 1 4 4 H 1.48507 * 109.47192 * 274.91830 * 3 2 1 5 5 H 1.48506 * 109.46958 * 34.91576 * 3 2 1 6 6 H 1.48501 * 109.47463 * 154.91699 * 3 2 1 7 7 C 1.38813 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99824 * 339.73278 * 7 2 1 9 9 N 1.36940 * 120.00290 * 159.73817 * 7 2 1 10 10 C 1.46929 * 120.63074 * 152.71655 * 9 7 2 11 11 C 1.53197 * 108.76960 * 126.41597 * 10 9 7 12 12 C 1.53039 * 109.31212 * 54.63660 * 11 10 9 13 13 C 1.53032 * 109.53799 * 298.63095 * 12 11 10 14 14 H 1.09003 * 109.50202 * 301.41507 * 13 12 11 15 15 C 1.52998 * 109.52670 * 181.33476 * 13 12 11 16 16 C 1.54263 * 110.03699 * 178.05121 * 15 13 12 17 17 C 1.54965 * 104.16322 * 217.13506 * 16 15 13 18 18 C 1.54889 * 102.77565 * 37.89125 * 17 16 15 19 19 C 1.53883 * 110.03151 * 60.83275 * 15 13 12 20 20 C 1.46926 * 120.62715 * 332.74631 * 9 7 2 21 21 H 0.96997 * 119.99652 * 0.02562 * 1 2 3 22 22 H 1.08999 * 109.58949 * 6.63241 * 10 9 7 23 23 H 1.09001 * 109.58593 * 246.20251 * 10 9 7 24 24 H 1.09004 * 109.49251 * 174.58522 * 11 10 9 25 25 H 1.08991 * 109.49663 * 294.68180 * 11 10 9 26 26 H 1.08997 * 109.45965 * 58.65238 * 12 11 10 27 27 H 1.09005 * 109.45901 * 178.61184 * 12 11 10 28 28 H 1.08998 * 110.01522 * 299.44667 * 15 13 12 29 29 H 1.08992 * 110.48779 * 335.78789 * 16 15 13 30 30 H 1.09011 * 110.48272 * 98.42854 * 16 15 13 31 31 H 1.08996 * 110.72356 * 279.57486 * 17 16 15 32 32 H 1.09001 * 110.92109 * 156.29269 * 17 16 15 33 33 H 1.08998 * 110.48595 * 203.40661 * 18 17 16 34 34 H 1.09003 * 110.60231 * 80.81319 * 18 17 16 35 35 H 1.08994 * 110.03196 * 238.56989 * 19 15 13 36 36 H 1.09002 * 110.03091 * 359.95966 * 19 15 13 37 37 H 1.09000 * 109.58534 * 353.36970 * 20 9 7 38 38 H 1.08997 * 109.58750 * 113.65377 * 20 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.3939 2.1064 -1.3950 5 1 1.5035 2.6204 0.8014 6 1 3.5959 1.4123 0.5935 7 6 2.0102 -1.2022 -0.0005 8 1 1.5203 -2.1087 0.3231 9 7 3.3161 -1.2388 -0.4112 10 6 4.2338 -2.2650 0.1020 11 6 4.8807 -2.9860 -1.0849 12 6 5.5405 -1.9557 -2.0043 13 6 4.4777 -0.9957 -2.5433 14 1 3.7179 -1.5604 -3.0838 15 6 5.1324 0.0136 -3.4885 16 6 4.0633 0.9572 -4.0771 17 6 4.5270 1.1920 -5.5369 18 6 5.0756 -0.1965 -5.9496 19 6 5.7763 -0.7194 -4.6785 20 6 3.8262 -0.2521 -1.3731 21 1 -0.4849 0.8400 -0.0004 22 1 3.6787 -2.9822 0.7067 23 1 5.0069 -1.7934 0.7086 24 1 5.6345 -3.6835 -0.7198 25 1 4.1171 -3.5318 -1.6389 26 1 6.2867 -1.3934 -1.4430 27 1 6.0228 -2.4682 -2.8368 28 1 5.8863 0.5911 -2.9535 29 1 3.0831 0.4807 -4.0603 30 1 4.0406 1.8981 -3.5271 31 1 5.3139 1.9452 -5.5752 32 1 3.6879 1.4796 -6.1704 33 1 5.7911 -0.0967 -6.7658 34 1 4.2607 -0.8610 -6.2367 35 1 6.8424 -0.4970 -4.7215 36 1 5.6229 -1.7943 -4.5822 37 1 3.0021 0.3588 -1.7416 38 1 4.5642 0.3852 -0.8861 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001176932789.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:53 Heat of formation + Delta-G solvation = -6.059144 kcal Electronic energy + Delta-G solvation = -16407.793922 eV Core-core repulsion = 14056.418023 eV Total energy + Delta-G solvation = -2351.375899 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 223.163 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.04195 -36.67550 -33.09545 -31.35518 -30.61378 -28.50416 -26.89441 -25.12459 -22.59354 -21.78976 -20.30154 -19.38713 -19.06250 -16.71560 -15.87969 -15.15178 -14.71154 -14.08677 -13.73633 -13.31024 -13.26310 -13.00153 -12.80938 -12.31929 -12.16969 -11.65614 -11.08344 -10.97989 -10.91001 -10.78268 -10.77187 -10.52345 -10.39414 -10.22161 -10.14214 -9.90205 -9.62584 -9.46871 -9.30945 -8.55252 -6.89042 -5.90157 -3.24763 3.35606 3.51306 3.55060 4.57495 4.77572 4.86241 4.87096 5.11254 5.35557 5.40872 5.53997 5.57246 5.64747 5.71919 5.81848 5.83881 5.91581 5.96486 6.04750 6.08687 6.17480 6.24112 6.26844 6.31478 6.39868 6.46013 6.51883 6.53839 6.63196 6.73106 6.75362 6.85495 6.90418 7.11969 8.03002 8.38013 9.01020 9.78241 10.17682 11.26050 Molecular weight = 223.16amu Principal moments of inertia in cm(-1) A = 0.024855 B = 0.011410 C = 0.008751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.265737 B = 2453.495274 C = 3199.000255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.022 3.978 3 Si 0.880 3.120 4 H -0.286 1.286 5 H -0.305 1.305 6 H -0.271 1.271 7 C -0.257 4.257 8 H 0.085 0.915 9 N -0.608 5.608 10 C 0.147 3.853 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.096 4.096 14 H 0.071 0.929 15 C -0.086 4.086 16 C -0.123 4.123 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.134 3.866 21 H 0.261 0.739 22 H 0.060 0.940 23 H 0.020 0.980 24 H 0.051 0.949 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.931 -0.679 -8.962 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.176 4.176 3 Si 0.711 3.289 4 H -0.214 1.214 5 H -0.233 1.233 6 H -0.196 1.196 7 C -0.385 4.385 8 H 0.102 0.898 9 N -0.331 5.331 10 C 0.022 3.978 11 C -0.175 4.175 12 C -0.143 4.143 13 C -0.116 4.116 14 H 0.090 0.910 15 C -0.105 4.105 16 C -0.161 4.161 17 C -0.162 4.162 18 C -0.161 4.161 19 C -0.156 4.156 20 C 0.009 3.991 21 H 0.071 0.929 22 H 0.078 0.922 23 H 0.038 0.962 24 H 0.070 0.930 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.085 0.915 37 H 0.089 0.911 38 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 11.761 -0.603 -8.914 14.770 hybrid contribution 0.402 1.029 0.036 1.105 sum 12.163 0.426 -8.877 15.064 Atomic orbital electron populations 1.69837 1.05696 1.26414 1.53459 1.25263 0.95215 0.97512 0.99658 0.86973 0.80116 0.84785 0.77070 1.21409 1.23316 1.19558 1.18949 0.84897 0.94671 1.40016 0.89786 1.44367 1.08437 1.33102 1.47193 1.20929 0.92353 0.91252 0.93309 1.22009 0.99283 0.97611 0.98606 1.21491 0.97430 0.97084 0.98284 1.21764 0.97166 0.96155 0.96556 0.91017 1.21791 0.97010 0.96217 0.95509 1.22492 0.99330 0.99348 0.94899 1.22501 1.00036 0.96891 0.96774 1.22350 0.99661 0.96839 0.97291 1.22236 0.98886 1.00322 0.94184 1.21359 0.96911 0.91775 0.89096 0.92874 0.92151 0.96236 0.92996 0.92138 0.92936 0.93007 0.91646 0.90979 0.92018 0.92014 0.91979 0.92367 0.91779 0.92494 0.91494 0.91097 0.96093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.44 13.97 55.49 0.78 -27.66 16 2 C 0.02 0.65 5.24 -17.43 -0.09 0.56 16 3 Si 0.88 22.93 24.34 -169.99 -4.14 18.79 16 4 H -0.29 -7.14 6.70 56.52 0.38 -6.76 16 5 H -0.30 -8.07 7.11 56.52 0.40 -7.67 16 6 H -0.27 -6.97 6.45 56.52 0.36 -6.60 16 7 C -0.26 -7.38 10.04 -15.06 -0.15 -7.53 16 8 H 0.08 2.56 8.06 -52.48 -0.42 2.14 16 9 N -0.61 -14.94 2.77 -172.31 -0.48 -15.42 16 10 C 0.15 3.02 6.52 -3.71 -0.02 3.00 16 11 C -0.14 -2.31 6.08 -26.61 -0.16 -2.47 16 12 C -0.11 -1.70 4.94 -26.69 -0.13 -1.83 16 13 C -0.10 -1.74 1.61 -90.50 -0.15 -1.89 16 14 H 0.07 1.40 8.13 -51.93 -0.42 0.98 16 15 C -0.09 -1.33 2.51 -89.50 -0.22 -1.55 16 16 C -0.12 -1.95 5.41 -25.03 -0.14 -2.08 16 17 C -0.12 -1.59 6.91 -24.70 -0.17 -1.76 16 18 C -0.12 -1.48 6.83 -25.07 -0.17 -1.65 16 19 C -0.12 -1.53 5.90 -25.61 -0.15 -1.68 16 20 C 0.13 3.00 3.17 -3.71 -0.01 2.99 16 21 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 22 H 0.06 1.23 7.93 -51.93 -0.41 0.82 16 23 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 26 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.73 6.49 -51.93 -0.34 0.39 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.07 1.26 7.72 -51.93 -0.40 0.86 16 30 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.07 0.86 6.39 -51.93 -0.33 0.53 16 37 H 0.07 1.74 3.79 -51.93 -0.20 1.54 16 38 H 0.02 0.48 6.97 -51.93 -0.36 0.12 16 LS Contribution 279.86 15.07 4.22 4.22 Total: -1.00 -30.37 279.86 -7.92 -38.29 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.73 Total: -2.32 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -1.57 Total: -15.90 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.30 Total: -43.08 kcal Atomic # 14 Polarization: 22.93 SS G_CDS: -4.14 Total: 18.79 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -30.37 -7.92 -38.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001176932789.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.231 kcal (2) G-P(sol) polarization free energy of solvation -30.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds