Wall clock time and date at job start Sun Mar 29 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38617 * 120.71290 * 2 1 4 4 N 1.32259 * 119.20324 * 179.97438 * 3 2 1 5 5 C 1.32558 * 120.73687 * 0.02562 * 4 3 2 6 6 S 1.76193 * 119.22567 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00049 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47004 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00006 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 89.99626 * 13 11 9 15 15 H 1.48502 * 109.47140 * 209.99610 * 13 11 9 16 16 H 1.48501 * 109.46982 * 329.99723 * 13 11 9 17 17 N 1.32561 * 121.54893 * 0.25484 * 5 4 3 18 18 C 1.32253 * 120.73533 * 359.48203 * 17 5 4 19 19 H 1.09000 * 109.47570 * 90.00035 * 1 2 3 20 20 H 1.09001 * 109.47055 * 209.99807 * 1 2 3 21 21 H 1.09003 * 109.46995 * 329.99525 * 1 2 3 22 22 H 1.08007 * 120.39933 * 359.96036 * 3 2 1 23 23 H 1.09002 * 109.47115 * 60.00094 * 7 6 5 24 24 H 1.09001 * 109.46925 * 300.00251 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99731 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99903 * 8 7 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.40232 * 180.22981 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1917 0.0000 4 7 3.5371 1.1569 0.0005 5 6 4.1843 0.0001 0.0005 6 16 5.9463 0.0001 0.0005 7 6 6.2606 -1.7824 -0.0003 8 6 7.7698 -2.0341 0.0003 9 6 8.0315 -3.5182 0.0002 10 1 7.2042 -4.2124 -0.0005 11 6 9.3272 -3.9897 0.0002 12 7 9.5555 -5.2849 0.0006 13 14 10.7581 -2.7890 0.0008 14 1 11.1371 -2.4714 1.4010 15 1 11.9168 -3.3993 -0.6993 16 1 10.3580 -1.5417 -0.6988 17 7 3.5372 -1.1568 -0.0050 18 6 2.2151 -1.1917 -0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6932 2.1374 -0.0006 23 1 5.8177 -2.2290 -0.8905 24 1 5.8177 -2.2298 0.8895 25 1 8.2131 -1.5866 -0.8893 26 1 8.2123 -1.5875 0.8906 27 1 10.4671 -5.6166 0.0002 28 1 1.6933 -2.1373 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042298063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:47 Heat of formation + Delta-G solvation = 29.849839 kcal Electronic energy + Delta-G solvation = -12300.502359 eV Core-core repulsion = 10056.344361 eV Total energy + Delta-G solvation = -2244.157998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.81809 -33.95114 -33.80873 -33.55948 -31.25204 -27.89329 -25.69125 -24.51658 -23.03947 -20.84777 -18.21678 -17.64526 -16.96783 -15.20076 -15.18609 -14.45546 -14.36451 -13.94242 -13.64898 -13.26429 -13.22572 -12.73196 -12.67013 -11.83292 -11.22441 -11.01166 -10.87620 -10.39876 -10.24563 -10.12092 -9.74342 -9.69000 -9.30208 -9.16093 -8.60110 -7.42509 -6.10258 -4.10423 0.76187 1.10295 1.59464 2.70823 3.29449 3.36922 3.40859 3.65677 4.23701 4.40704 4.50508 4.66113 4.71318 4.75120 5.23024 5.30234 5.43202 5.62567 5.79181 5.93031 6.03767 6.25187 6.55441 6.91743 7.06405 7.17235 7.64072 7.93521 8.43874 8.92651 9.49718 11.02416 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.061273 B = 0.005563 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.859111 B = 5032.174242 C = 5463.284517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.218 4.218 3 C 0.158 3.842 4 N -0.506 5.506 5 C 0.297 3.703 6 S -0.027 6.027 7 C -0.073 4.073 8 C -0.001 4.001 9 C -0.518 4.518 10 H 0.076 0.924 11 C 0.071 3.929 12 N -0.898 5.898 13 Si 0.877 3.123 14 H -0.275 1.275 15 H -0.286 1.286 16 H -0.264 1.264 17 N -0.516 5.516 18 C 0.163 3.837 19 H 0.072 0.928 20 H 0.070 0.930 21 H 0.069 0.931 22 H 0.167 0.833 23 H 0.089 0.911 24 H 0.088 0.912 25 H 0.027 0.973 26 H 0.022 0.978 27 H 0.265 0.735 28 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.237 11.296 -0.029 19.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.227 4.227 3 C -0.012 4.012 4 N -0.222 5.222 5 C -0.077 4.077 6 S 0.212 5.788 7 C -0.221 4.221 8 C -0.041 4.041 9 C -0.558 4.558 10 H 0.094 0.906 11 C -0.131 4.131 12 N -0.537 5.537 13 Si 0.704 3.296 14 H -0.200 1.200 15 H -0.211 1.211 16 H -0.188 1.188 17 N -0.233 5.233 18 C -0.007 4.007 19 H 0.090 0.910 20 H 0.089 0.911 21 H 0.088 0.912 22 H 0.184 0.816 23 H 0.107 0.893 24 H 0.107 0.893 25 H 0.045 0.955 26 H 0.041 0.959 27 H 0.075 0.925 28 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -14.160 12.077 -0.035 18.611 hybrid contribution -1.142 -0.543 0.016 1.265 sum -15.303 11.534 -0.020 19.163 Atomic orbital electron populations 1.20575 0.89334 1.03171 1.02542 1.21552 0.98883 0.95604 1.06616 1.23133 0.89439 0.98129 0.90463 1.68575 1.09597 1.28596 1.15423 1.25259 1.01997 0.86176 0.94255 1.85929 0.89152 1.15162 1.88590 1.23755 1.03322 0.88771 1.06294 1.19452 0.88277 0.98790 0.97541 1.20913 0.93917 0.89118 1.51818 0.90551 1.24964 0.98786 0.95085 0.94289 1.69894 1.20936 1.12409 1.50417 0.86806 0.82141 0.81871 0.78760 1.20043 1.21141 1.18801 1.68926 1.10100 1.28582 1.15652 1.23169 0.89503 0.98235 0.89781 0.90964 0.91145 0.91236 0.81600 0.89282 0.89316 0.95505 0.95944 0.92513 0.81535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.06 36.01 0.36 -0.26 15 2 C -0.22 -2.30 5.91 -104.34 -0.62 -2.92 15 3 C 0.16 1.88 11.00 -17.23 -0.19 1.69 15 4 N -0.51 -8.10 10.40 -13.44 -0.14 -8.24 15 5 C 0.30 5.25 7.85 -90.83 -0.71 4.54 15 6 S -0.03 -0.51 22.25 -107.50 -2.39 -2.90 15 7 C -0.07 -1.52 4.75 37.16 0.18 -1.35 15 8 C 0.00 -0.02 4.04 -27.88 -0.11 -0.14 15 9 C -0.52 -14.68 9.66 -34.44 -0.33 -15.01 15 10 H 0.08 2.31 7.99 -52.49 -0.42 1.90 15 11 C 0.07 2.06 5.47 -17.82 -0.10 1.96 15 12 N -0.90 -27.45 13.96 55.43 0.77 -26.67 15 13 Si 0.88 21.56 27.47 -169.99 -4.67 16.89 15 14 H -0.27 -6.63 7.11 56.52 0.40 -6.23 15 15 H -0.29 -6.93 7.11 56.52 0.40 -6.53 15 16 H -0.26 -6.25 6.54 56.52 0.37 -5.88 15 17 N -0.52 -8.71 9.14 -13.44 -0.12 -8.84 15 18 C 0.16 2.08 11.00 -17.23 -0.19 1.89 15 19 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 15 20 H 0.07 0.38 8.10 -51.93 -0.42 -0.04 15 21 H 0.07 0.35 8.10 -51.93 -0.42 -0.07 15 22 H 0.17 1.33 8.06 -52.48 -0.42 0.91 15 23 H 0.09 1.88 8.11 -51.92 -0.42 1.46 15 24 H 0.09 1.87 8.11 -51.92 -0.42 1.45 15 25 H 0.03 0.64 7.20 -51.93 -0.37 0.27 15 26 H 0.02 0.53 7.57 -51.93 -0.39 0.14 15 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 15 28 H 0.17 1.58 8.06 -52.48 -0.42 1.16 15 LS Contribution 261.46 15.07 3.94 3.94 Total: -1.00 -32.04 261.46 -7.63 -39.67 By element: Atomic # 1 Polarization: -0.94 SS G_CDS: -3.30 Total: -4.25 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -1.71 Total: -9.60 kcal Atomic # 7 Polarization: -44.26 SS G_CDS: 0.51 Total: -43.75 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Atomic # 16 Polarization: -0.51 SS G_CDS: -2.39 Total: -2.90 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -32.04 -7.63 -39.67 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042298063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.518 kcal (2) G-P(sol) polarization free energy of solvation -32.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds