Wall clock time and date at job start Sun Mar 29 2020 22:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38617 * 120.71290 * 2 1 4 4 N 1.32259 * 119.20324 * 179.97438 * 3 2 1 5 5 C 1.32558 * 120.73687 * 0.02562 * 4 3 2 6 6 S 1.76193 * 119.22567 * 179.97438 * 5 4 3 7 7 C 1.81002 * 100.00049 * 180.02562 * 6 5 4 8 8 C 1.53000 * 109.47004 * 180.02562 * 7 6 5 9 9 C 1.50703 * 109.46912 * 179.97438 * 8 7 6 10 10 H 1.08001 * 119.99776 * 0.02562 * 9 8 7 11 11 C 1.37877 * 120.00001 * 179.97438 * 9 8 7 12 12 N 1.31512 * 119.99923 * 179.97438 * 11 9 8 13 13 Si 1.86804 * 120.00006 * 0.02562 * 11 9 8 14 14 H 1.48497 * 109.46794 * 89.99626 * 13 11 9 15 15 H 1.48502 * 109.47140 * 209.99610 * 13 11 9 16 16 H 1.48501 * 109.46982 * 329.99723 * 13 11 9 17 17 N 1.32561 * 121.54893 * 0.25484 * 5 4 3 18 18 C 1.32253 * 120.73533 * 359.48203 * 17 5 4 19 19 H 1.09000 * 109.47570 * 90.00035 * 1 2 3 20 20 H 1.09001 * 109.47055 * 209.99807 * 1 2 3 21 21 H 1.09003 * 109.46995 * 329.99525 * 1 2 3 22 22 H 1.08007 * 120.39933 * 359.96036 * 3 2 1 23 23 H 1.09002 * 109.47115 * 60.00094 * 7 6 5 24 24 H 1.09001 * 109.46925 * 300.00251 * 7 6 5 25 25 H 1.09001 * 109.47194 * 299.99731 * 8 7 6 26 26 H 1.08992 * 109.47399 * 59.99903 * 8 7 6 27 27 H 0.97000 * 119.99684 * 179.97438 * 12 11 9 28 28 H 1.08003 * 120.40232 * 180.22981 * 18 17 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2150 1.1917 0.0000 4 7 3.5371 1.1569 0.0005 5 6 4.1843 0.0001 0.0005 6 16 5.9463 0.0001 0.0005 7 6 6.2606 -1.7824 -0.0003 8 6 7.7698 -2.0341 0.0003 9 6 8.0315 -3.5182 0.0002 10 1 7.2042 -4.2124 -0.0005 11 6 9.3272 -3.9897 0.0002 12 7 9.5555 -5.2849 0.0006 13 14 10.7581 -2.7890 0.0008 14 1 11.1371 -2.4714 1.4010 15 1 11.9168 -3.3993 -0.6993 16 1 10.3580 -1.5417 -0.6988 17 7 3.5372 -1.1568 -0.0050 18 6 2.2151 -1.1917 -0.0005 19 1 -0.3634 0.0000 -1.0276 20 1 -0.3633 -0.8900 0.5138 21 1 -0.3633 0.8900 0.5139 22 1 1.6932 2.1374 -0.0006 23 1 5.8177 -2.2290 -0.8905 24 1 5.8177 -2.2298 0.8895 25 1 8.2131 -1.5866 -0.8893 26 1 8.2123 -1.5875 0.8906 27 1 10.4671 -5.6166 0.0002 28 1 1.6933 -2.1373 -0.0013 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042298063.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:47 Heat of formation + Delta-G solvation = 9.091139 kcal Electronic energy + Delta-G solvation = -12301.402524 eV Core-core repulsion = 10056.344361 eV Total energy + Delta-G solvation = -2245.058163 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 224.068 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.88635 -35.83039 -34.83536 -34.71544 -33.30730 -28.76845 -27.59522 -25.62905 -24.05114 -22.72638 -19.40002 -19.14885 -18.71057 -16.53492 -16.37024 -16.28044 -15.58413 -15.36429 -14.82216 -14.73876 -14.50964 -13.90864 -13.72744 -13.14776 -13.10423 -12.36149 -12.22428 -12.02187 -11.95355 -11.77619 -11.60071 -11.25648 -10.81564 -10.76704 -10.30643 -8.78331 -8.32702 -6.38965 -0.29667 0.09661 0.25450 1.17541 1.36947 1.38251 1.50392 2.34305 2.59329 3.01887 3.22893 3.57538 3.66483 3.94318 4.01016 4.16956 4.24269 4.66778 4.73731 4.87054 5.06121 5.10018 5.16962 5.25160 5.43796 5.51656 5.88775 6.19954 6.66520 6.83383 7.25028 8.83434 Molecular weight = 224.07amu Principal moments of inertia in cm(-1) A = 0.061273 B = 0.005563 C = 0.005124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 456.859111 B = 5032.174242 C = 5463.284517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.188 4.188 3 C 0.148 3.852 4 N -0.524 5.524 5 C 0.270 3.730 6 S -0.030 6.030 7 C -0.060 4.060 8 C 0.004 3.996 9 C -0.530 4.530 10 H 0.037 0.963 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.264 1.264 15 H -0.279 1.279 16 H -0.247 1.247 17 N -0.547 5.547 18 C 0.142 3.858 19 H 0.088 0.912 20 H 0.083 0.917 21 H 0.090 0.910 22 H 0.208 0.792 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.030 0.970 27 H 0.269 0.731 28 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.981 13.513 -0.009 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.196 4.196 3 C -0.021 4.021 4 N -0.240 5.240 5 C -0.105 4.105 6 S 0.207 5.793 7 C -0.209 4.209 8 C -0.035 4.035 9 C -0.570 4.570 10 H 0.056 0.944 11 C -0.186 4.186 12 N -0.585 5.585 13 Si 0.769 3.231 14 H -0.188 1.188 15 H -0.205 1.205 16 H -0.170 1.170 17 N -0.264 5.264 18 C -0.026 4.026 19 H 0.107 0.893 20 H 0.102 0.898 21 H 0.109 0.891 22 H 0.225 0.775 23 H 0.096 0.904 24 H 0.096 0.904 25 H 0.049 0.951 26 H 0.048 0.952 27 H 0.078 0.922 28 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -15.959 14.298 -0.015 21.427 hybrid contribution -0.929 -1.237 0.008 1.547 sum -16.888 13.061 -0.007 21.349 Atomic orbital electron populations 1.20729 0.85640 1.04988 1.04044 1.22052 1.01194 0.94160 1.02179 1.23916 0.88178 1.00464 0.89531 1.68507 1.11737 1.27975 1.15817 1.24839 1.01161 0.87213 0.97247 1.85600 0.91755 1.11804 1.90121 1.23306 1.01110 0.91277 1.05239 1.19300 0.90570 0.95793 0.97818 1.21192 0.93134 0.91141 1.51543 0.94426 1.25929 1.01992 0.96986 0.93742 1.70039 1.21918 1.14675 1.51826 0.85707 0.78092 0.79759 0.79506 1.18850 1.20486 1.17040 1.68836 1.12369 1.28735 1.16477 1.23792 0.88404 1.00580 0.89865 0.89304 0.89767 0.89078 0.77502 0.90391 0.90384 0.95078 0.95198 0.92184 0.78805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.76 10.06 71.24 0.72 -0.04 15 2 C -0.19 -3.35 5.91 -19.68 -0.12 -3.46 15 3 C 0.15 3.06 11.00 84.72 0.93 3.99 15 4 N -0.52 -16.06 10.40 -196.44 -2.04 -18.10 15 5 C 0.27 9.51 7.85 180.42 1.42 10.92 15 6 S -0.03 -1.14 22.25 -56.49 -1.26 -2.39 15 7 C -0.06 -2.60 4.75 71.98 0.34 -2.26 15 8 C 0.00 0.22 4.04 29.85 0.12 0.34 15 9 C -0.53 -31.08 9.66 25.60 0.25 -30.83 15 10 H 0.04 2.41 7.99 -2.91 -0.02 2.39 15 11 C 0.01 0.68 5.47 84.65 0.46 1.14 15 12 N -0.94 -59.30 13.96 21.45 0.30 -59.00 15 13 Si 0.95 44.37 27.47 68.60 1.88 46.26 15 14 H -0.26 -11.84 7.11 99.48 0.71 -11.14 15 15 H -0.28 -12.74 7.11 99.48 0.71 -12.03 15 16 H -0.25 -10.85 6.54 99.48 0.65 -10.19 15 17 N -0.55 -18.38 9.14 -196.44 -1.80 -20.18 15 18 C 0.14 3.35 11.00 84.72 0.93 4.28 15 19 H 0.09 0.54 8.14 -2.39 -0.02 0.52 15 20 H 0.08 0.52 8.10 -2.39 -0.02 0.50 15 21 H 0.09 0.42 8.10 -2.39 -0.02 0.40 15 22 H 0.21 2.39 8.06 -2.91 -0.02 2.37 15 23 H 0.08 3.45 8.11 -2.39 -0.02 3.43 15 24 H 0.08 3.45 8.11 -2.39 -0.02 3.43 15 25 H 0.03 1.48 7.20 -2.39 -0.02 1.46 15 26 H 0.03 1.40 7.57 -2.39 -0.02 1.39 15 27 H 0.27 15.67 8.31 -92.71 -0.77 14.90 15 28 H 0.20 3.25 8.06 -2.91 -0.02 3.23 15 Total: -1.00 -71.91 261.46 3.23 -68.68 By element: Atomic # 1 Polarization: -0.44 SS G_CDS: 1.09 Total: 0.66 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 5.05 Total: -15.92 kcal Atomic # 7 Polarization: -93.74 SS G_CDS: -3.54 Total: -97.28 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.88 Total: 46.26 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -1.26 Total: -2.39 kcal Total: -71.91 3.23 -68.68 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042298063.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.772 kcal (2) G-P(sol) polarization free energy of solvation -71.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds