Wall clock time and date at job start Sun Mar 29 2020 22:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41256 * 126.70822 * 2 1 4 4 C 1.36824 * 103.84981 * 180.02562 * 3 2 1 5 5 C 1.47511 * 126.94569 * 179.97438 * 4 3 2 6 6 O 1.21587 * 120.00037 * 0.02562 * 5 4 3 7 7 N 1.34776 * 120.00209 * 179.97438 * 5 4 3 8 8 C 1.46490 * 120.00268 * 180.02562 * 7 5 4 9 9 H 1.09003 * 109.46993 * 35.00779 * 8 7 5 10 10 C 1.52998 * 109.47380 * 275.00307 * 8 7 5 11 11 C 1.50703 * 109.47446 * 155.00125 * 8 7 5 12 12 H 1.08005 * 119.99551 * 35.00526 * 11 8 7 13 13 C 1.37868 * 120.00466 * 215.00504 * 11 8 7 14 14 N 1.31512 * 120.00194 * 184.91737 * 13 11 8 15 15 Si 1.86802 * 120.00167 * 4.91686 * 13 11 8 16 16 H 1.48496 * 109.47292 * 84.83080 * 15 13 11 17 17 H 1.48494 * 109.47356 * 204.83526 * 15 13 11 18 18 H 1.48500 * 109.46883 * 324.83313 * 15 13 11 19 19 O 1.34643 * 106.10703 * 0.26369 * 4 3 2 20 20 N 1.20882 * 111.47293 * 359.52406 * 19 4 3 21 21 H 1.09007 * 109.47084 * 90.00271 * 1 2 3 22 22 H 1.08992 * 109.47491 * 210.00233 * 1 2 3 23 23 H 1.09001 * 109.47034 * 330.00557 * 1 2 3 24 24 H 1.08008 * 128.07704 * 359.97438 * 3 2 1 25 25 H 0.97006 * 119.99628 * 0.02562 * 7 5 4 26 26 H 1.09007 * 109.46978 * 55.04113 * 10 8 7 27 27 H 1.08995 * 109.47334 * 295.03354 * 10 8 7 28 28 H 1.09001 * 109.47232 * 175.03013 * 10 8 7 29 29 H 0.97002 * 119.99993 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1324 0.0000 4 6 3.6121 0.6009 -0.0006 5 6 4.8871 1.3429 -0.0014 6 8 4.8829 2.5587 -0.0011 7 7 6.0566 0.6730 -0.0014 8 6 7.3227 1.4098 -0.0016 9 1 7.2135 2.3201 0.5879 10 6 7.7002 1.7748 -1.4386 11 6 8.4047 0.5496 0.5989 12 1 8.3985 -0.5181 0.4358 13 6 9.4024 1.1254 1.3563 14 7 10.3990 0.3904 1.7993 15 14 9.3388 2.9496 1.7534 16 1 8.4932 3.1655 2.9549 17 1 10.7127 3.4465 2.0193 18 1 8.7600 3.6870 0.6017 19 8 3.4539 -0.7361 -0.0068 20 7 2.2847 -1.0434 -0.0006 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 2.0679 2.1747 -0.0004 25 1 6.0599 -0.2970 -0.0012 26 1 6.8793 2.3223 -1.9020 27 1 7.8956 0.8646 -2.0054 28 1 8.5945 2.3980 -1.4323 29 1 11.1007 0.7955 2.3326 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336139.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:19:23 Heat of formation + Delta-G solvation = 15.551735 kcal Electronic energy + Delta-G solvation = -14970.092962 eV Core-core repulsion = 12282.562081 eV Total energy + Delta-G solvation = -2687.530881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 224.095 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.89693 -39.09529 -35.25850 -34.73094 -32.56504 -31.89624 -29.75360 -28.74783 -25.40621 -24.02971 -22.75406 -20.63838 -19.64783 -18.38040 -17.67231 -16.80561 -15.85140 -15.55534 -14.51955 -14.26253 -13.79652 -13.52808 -13.44007 -13.16404 -12.82921 -12.58366 -12.45895 -11.61945 -11.41311 -11.16305 -10.88534 -10.67745 -10.10416 -9.96755 -9.71569 -9.60671 -9.28701 -8.77189 -8.31005 -6.28456 -4.33459 0.99509 2.06856 2.87204 3.22528 3.30871 3.36625 3.42807 3.74865 4.05741 4.27458 4.59081 5.03703 5.09269 5.20996 5.28155 5.40026 5.54426 5.65178 5.98424 6.24670 6.42563 6.57880 6.79904 7.05709 7.22690 7.38869 7.90140 8.16307 8.41529 8.59418 8.74328 9.31792 10.82971 Molecular weight = 224.09amu Principal moments of inertia in cm(-1) A = 0.049166 B = 0.006547 C = 0.006296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.364410 B = 4276.043165 C = 4446.110746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.006 3.994 3 C -0.169 4.169 4 C -0.063 4.063 5 C 0.586 3.414 6 O -0.531 6.531 7 N -0.682 5.682 8 C 0.229 3.771 9 H 0.054 0.946 10 C -0.149 4.149 11 C -0.533 4.533 12 H 0.082 0.918 13 C 0.083 3.917 14 N -0.885 5.885 15 Si 0.874 3.126 16 H -0.272 1.272 17 H -0.285 1.285 18 H -0.259 1.259 19 O 0.116 5.884 20 N -0.354 5.354 21 H 0.080 0.920 22 H 0.077 0.923 23 H 0.082 0.918 24 H 0.180 0.820 25 H 0.401 0.599 26 H 0.030 0.970 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.048 0.738 -3.641 15.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.152 4.152 3 C -0.191 4.191 4 C -0.129 4.129 5 C 0.367 3.633 6 O -0.410 6.410 7 N -0.329 5.329 8 C 0.128 3.872 9 H 0.072 0.928 10 C -0.208 4.208 11 C -0.571 4.571 12 H 0.100 0.900 13 C -0.122 4.122 14 N -0.521 5.521 15 Si 0.700 3.300 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.184 1.184 19 O 0.044 5.956 20 N -0.056 5.056 21 H 0.099 0.901 22 H 0.095 0.905 23 H 0.101 0.899 24 H 0.198 0.802 25 H 0.236 0.764 26 H 0.049 0.951 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.032 0.290 -3.526 15.442 hybrid contribution 0.018 1.228 0.321 1.270 sum -15.014 1.518 -3.205 15.427 Atomic orbital electron populations 1.20162 0.85562 1.03885 1.03434 1.23618 0.99198 0.88599 1.03810 1.22804 0.90108 1.01512 1.04712 1.24775 0.98116 0.83566 1.06476 1.16777 0.81347 0.86432 0.78737 1.90817 1.86020 1.11919 1.52214 1.46751 1.05743 1.11001 1.69420 1.19291 0.80189 0.93540 0.94219 0.92816 1.22233 0.99815 1.00387 0.98344 1.20984 1.07489 0.95910 1.32746 0.90008 1.24939 0.94827 0.98216 0.94262 1.69875 1.10915 1.36442 1.34834 0.86903 0.77539 0.85527 0.80046 1.19737 1.21041 1.18377 1.84980 1.21196 1.22523 1.66868 1.73718 0.89437 1.24456 1.18026 0.90098 0.90457 0.89879 0.80234 0.76399 0.95076 0.93075 0.92509 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.47 36.01 0.38 -0.23 15 2 C 0.01 0.07 7.31 -82.16 -0.60 -0.53 15 3 C -0.17 -2.34 10.91 -38.95 -0.43 -2.77 15 4 C -0.06 -1.02 7.29 -36.32 -0.26 -1.29 15 5 C 0.59 11.32 7.78 -12.48 -0.10 11.23 15 6 O -0.53 -11.67 16.58 5.29 0.09 -11.58 15 7 N -0.68 -13.68 5.07 -55.99 -0.28 -13.96 15 8 C 0.23 5.31 2.22 -69.09 -0.15 5.16 15 9 H 0.05 1.34 4.73 -51.93 -0.25 1.09 15 10 C -0.15 -3.15 9.47 37.16 0.35 -2.80 15 11 C -0.53 -14.04 9.05 -34.44 -0.31 -14.35 15 12 H 0.08 2.27 8.06 -52.48 -0.42 1.85 15 13 C 0.08 2.27 5.47 -17.82 -0.10 2.17 15 14 N -0.88 -25.63 13.96 55.43 0.77 -24.86 15 15 Si 0.87 20.97 26.99 -169.99 -4.59 16.38 15 16 H -0.27 -6.54 7.11 56.52 0.40 -6.14 15 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 18 H -0.26 -6.07 6.82 56.52 0.39 -5.69 15 19 O 0.12 1.84 11.04 15.55 0.17 2.01 15 20 N -0.35 -5.36 12.04 33.52 0.40 -4.96 15 21 H 0.08 0.57 8.14 -51.93 -0.42 0.15 15 22 H 0.08 0.61 8.14 -51.93 -0.42 0.18 15 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 15 24 H 0.18 2.13 8.06 -52.48 -0.42 1.71 15 25 H 0.40 7.28 8.42 -40.82 -0.34 6.93 15 26 H 0.03 0.62 8.14 -51.92 -0.42 0.19 15 27 H 0.05 1.02 8.14 -51.93 -0.42 0.59 15 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 15 29 H 0.27 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 263.11 15.07 3.97 3.97 Total: -1.00 -30.18 263.11 -3.81 -33.99 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -3.12 Total: 2.43 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: -1.22 Total: -3.42 kcal Atomic # 7 Polarization: -44.67 SS G_CDS: 0.89 Total: -43.78 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.26 Total: -9.57 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -4.59 Total: 16.38 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -30.18 -3.81 -33.99 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336139.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.546 kcal (2) G-P(sol) polarization free energy of solvation -30.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.994 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds