Wall clock time and date at job start Sun Mar 29 2020 21:51:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21323 * 120.00329 * 2 1 4 4 C 1.46630 * 119.99801 * 179.97438 * 2 1 3 5 5 C 1.40072 * 120.20120 * 0.02562 * 4 2 1 6 6 C 1.37579 * 119.91149 * 180.22925 * 5 4 2 7 7 C 1.38958 * 120.33836 * 359.47050 * 6 5 4 8 8 F 1.35108 * 119.79478 * 180.30461 * 7 6 5 9 9 C 1.38326 * 120.41309 * 0.55087 * 7 6 5 10 10 C 1.38681 * 120.07287 * 359.70812 * 9 7 6 11 11 O 1.35465 * 120.16906 * 180.02562 * 10 9 7 12 12 C 1.34803 * 116.99685 * 354.39395 * 11 10 9 13 13 H 1.08002 * 120.00384 * 5.06672 * 12 11 10 14 14 C 1.38720 * 119.99929 * 185.06481 * 12 11 10 15 15 N 1.31503 * 120.00269 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 120.00153 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46511 * 60.00518 * 16 14 12 18 18 H 1.48500 * 109.47260 * 179.97438 * 16 14 12 19 19 H 1.48499 * 109.47345 * 300.00449 * 16 14 12 20 20 H 1.08996 * 109.47172 * 180.02562 * 1 2 3 21 21 H 1.09003 * 109.47307 * 300.00666 * 1 2 3 22 22 H 1.08998 * 109.46863 * 60.00226 * 1 2 3 23 23 H 1.07992 * 120.03932 * 359.94861 * 5 4 2 24 24 H 1.08008 * 119.82745 * 179.74854 * 6 5 4 25 25 H 1.07999 * 119.96714 * 179.72852 * 9 7 6 26 26 H 0.96992 * 120.00507 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2401 -1.2699 0.0006 5 6 1.5440 -2.4854 0.0006 6 6 2.2378 -3.6734 0.0059 7 6 3.6274 -3.6746 0.0002 8 9 4.2976 -4.8477 -0.0008 9 6 4.3287 -2.4823 0.0005 10 6 3.6466 -1.2749 0.0005 11 8 4.3315 -0.1061 0.0004 12 6 5.6723 -0.1825 0.1176 13 1 6.1598 -1.1462 0.1237 14 6 6.4258 0.9767 0.2303 15 7 5.8323 2.1501 0.2233 16 14 8.2837 0.8709 0.3934 17 1 8.8474 0.1912 -0.8006 18 1 8.8504 2.2396 0.4968 19 1 8.6304 0.0977 1.6129 20 1 -0.3633 -1.0276 0.0005 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 0.4640 -2.4899 0.0010 24 1 1.6996 -4.6098 0.0100 25 1 5.4087 -2.4917 0.0005 26 1 6.3591 2.9607 0.3025 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062748137.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:25 Heat of formation + Delta-G solvation = -105.198399 kcal Electronic energy + Delta-G solvation = -14854.485856 eV Core-core repulsion = 12005.965800 eV Total energy + Delta-G solvation = -2848.520056 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 224.064 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.96933 -41.21330 -39.45428 -37.99560 -34.45275 -32.67711 -30.86827 -29.91959 -27.43661 -24.57984 -23.43101 -21.00104 -20.17519 -19.21717 -17.41446 -17.20148 -17.06478 -16.72038 -16.03403 -15.93237 -15.57971 -15.31228 -15.19667 -15.07737 -13.94897 -13.75081 -13.40183 -13.02722 -12.92650 -12.80448 -12.39144 -12.25710 -12.11920 -11.70192 -10.90752 -10.39047 -9.84620 -9.23814 -8.55642 -6.28148 -0.24813 0.51462 1.29983 1.41664 1.47723 1.57934 2.09801 2.69127 3.02075 3.13220 3.34469 3.46071 3.85177 4.13522 4.29094 4.36305 4.69898 4.75392 4.76125 4.95020 5.13589 5.18196 5.21053 5.32125 5.51556 5.85433 5.97465 6.82650 6.97777 7.60678 8.63570 Molecular weight = 224.06amu Principal moments of inertia in cm(-1) A = 0.023285 B = 0.010952 C = 0.007484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.203879 B = 2555.972946 C = 3740.392257 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.371 3.629 3 O -0.506 6.506 4 C -0.283 4.283 5 C 0.021 3.979 6 C -0.236 4.236 7 C 0.167 3.833 8 F -0.140 7.140 9 C -0.301 4.301 10 C 0.172 3.828 11 O -0.175 6.175 12 C -0.436 4.436 13 H 0.105 0.895 14 C -0.014 4.014 15 N -0.897 5.897 16 Si 1.022 2.978 17 H -0.255 1.255 18 H -0.268 1.268 19 H -0.255 1.255 20 H 0.118 0.882 21 H 0.098 0.902 22 H 0.099 0.901 23 H 0.194 0.806 24 H 0.174 0.826 25 H 0.128 0.872 26 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.415 -10.575 -0.032 13.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.253 3.747 3 O -0.385 6.385 4 C -0.285 4.285 5 C 0.004 3.996 6 C -0.255 4.255 7 C 0.148 3.852 8 F -0.119 7.119 9 C -0.321 4.321 10 C 0.115 3.885 11 O -0.077 6.077 12 C -0.511 4.511 13 H 0.122 0.878 14 C -0.215 4.215 15 N -0.531 5.531 16 Si 0.840 3.160 17 H -0.179 1.179 18 H -0.192 1.192 19 H -0.179 1.179 20 H 0.136 0.864 21 H 0.116 0.884 22 H 0.117 0.883 23 H 0.211 0.789 24 H 0.192 0.808 25 H 0.146 0.854 26 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.098 -9.577 -0.039 12.542 hybrid contribution 1.458 0.060 0.032 1.459 sum -6.641 -9.517 -0.007 11.605 Atomic orbital electron populations 1.22185 0.89440 1.06807 1.05276 1.23056 0.93756 0.86901 0.70986 1.90717 1.73448 1.35795 1.38589 1.20293 0.89994 0.97789 1.20459 1.21497 1.01562 0.87808 0.88747 1.21101 0.90367 1.01138 1.12859 1.17876 0.91261 0.79341 0.96759 1.91460 1.81323 1.45700 1.93374 1.21042 1.01440 0.91635 1.17980 1.19948 0.92433 0.85897 0.90188 1.84137 1.20982 1.26248 1.76301 1.22010 0.79149 0.95929 1.54030 0.87804 1.26764 1.06519 0.93266 0.94939 1.70254 1.39016 0.98639 1.45206 0.84623 0.72640 0.78652 0.80094 1.17883 1.19199 1.17914 0.86365 0.88362 0.88290 0.78869 0.80835 0.85388 0.91466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.28 10.19 71.24 0.73 -3.56 15 2 C 0.37 15.10 7.21 27.88 0.20 15.30 15 3 O -0.51 -27.92 15.91 17.79 0.28 -27.63 15 4 C -0.28 -11.42 5.88 -20.05 -0.12 -11.53 15 5 C 0.02 0.58 9.44 22.56 0.21 0.79 15 6 C -0.24 -6.43 10.00 22.29 0.22 -6.21 15 7 C 0.17 5.94 7.30 22.46 0.16 6.10 15 8 F -0.14 -4.68 17.26 44.97 0.78 -3.90 15 9 C -0.30 -13.40 9.13 22.40 0.20 -13.20 15 10 C 0.17 8.66 6.66 22.97 0.15 8.81 15 11 O -0.18 -10.87 7.83 1.61 0.01 -10.86 15 12 C -0.44 -26.05 9.49 67.94 0.64 -25.40 15 13 H 0.10 5.66 5.21 -2.91 -0.02 5.65 15 14 C -0.01 -0.81 5.49 84.86 0.47 -0.34 15 15 N -0.90 -56.84 13.67 21.62 0.30 -56.55 15 16 Si 1.02 43.36 29.55 68.60 2.03 45.39 15 17 H -0.25 -10.12 7.11 99.48 0.71 -9.41 15 18 H -0.27 -10.84 7.11 99.48 0.71 -10.13 15 19 H -0.26 -10.14 7.11 99.48 0.71 -9.44 15 20 H 0.12 1.71 5.59 -2.39 -0.01 1.70 15 21 H 0.10 2.14 8.14 -2.39 -0.02 2.12 15 22 H 0.10 2.13 8.14 -2.39 -0.02 2.11 15 23 H 0.19 2.91 5.92 -2.91 -0.02 2.89 15 24 H 0.17 3.20 8.06 -2.91 -0.02 3.18 15 25 H 0.13 5.92 5.63 -2.91 -0.02 5.90 15 26 H 0.28 15.95 8.31 -92.71 -0.77 15.18 15 Total: -1.00 -80.54 241.34 7.50 -73.04 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.23 Total: 9.75 kcal Atomic # 6 Polarization: -32.11 SS G_CDS: 2.88 Total: -29.24 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.30 Total: -56.55 kcal Atomic # 8 Polarization: -38.79 SS G_CDS: 0.30 Total: -38.49 kcal Atomic # 9 Polarization: -4.68 SS G_CDS: 0.78 Total: -3.90 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -80.54 7.50 -73.04 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062748137.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.155 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds